PDB Chemical Component M5M

Ideal Model

Chemical Description

Name 2'-(N-ACETAMIDE)-CYTIDINE-5'-MONOPHOSPHATE
Formula C11 H17 N4 O8 P
Formal charge 0
Molecular weight 364.248 g/mol
Component type RNA LINKING
Nonstandard Parent Id C

Chemical features

Atom count 41
Chiral atom count 4
Chiral atoms C4' C1' C2' C3'
Observed leaving atoms OP3 HO3'
Bond count 42
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-(acetylamino)-2'-deoxycytidine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-4-acetamido-5-(4-amino-2-oxo-pyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CC(=O)N[C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1N2C=CC(=NC2=O)N
SMILES (CACTVS) CC(=O)N[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1N2C=CC(=NC2=O)N
Stereo SMILES (OpenEye) CC(=O)N[C@@H]1[C@@H]([C@H](O[C@H]1N2C=CC(=NC2=O)N)COP(=O)(O)O)O
InChI descriptor InChI=1S/C11H17N4O8P/c1-5(16)13-8-9(17)6(4-22-24(19,20)21)23-10(8)15-3-2-7(12)14-11(15)18/h2-3,6,8-10,17H,4H2,1H3,(H,13,16)(H2,12,14,18)(H2,19,20,21)/t6-,8-,9-,10-/m1/s1
InChIKey descriptor WPJHNTZXIXFENS-PEBGCTIMSA-N

Status Information

Last modified 2011-06-04
Created 2005-03-17
Release status REL
Model PDB code 1YY0
Processing site RCSB