PDB Chemical Component M5J

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for M5J

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C9	C8	1.510	1.552
C9	C11	1.501	1.543
C8	C10	1.507	1.549
C11	C5	1.479	1.507
C11	N16	1.426	1.470
C2	C5	1.373	1.383
C2	C1	1.377	1.383
C5	C4	1.377	1.383
C1	C3	1.374	1.381
C10	N16	1.433	1.474
N16	C7	1.370	1.348
C4	C6	1.381	1.384
C3	C6	1.375	1.385
O17	C7	1.224	1.213
C7	C15	1.512	1.507
C12	C15	1.502	1.530
C6	F18	1.352	1.351
C15	C14	1.520	1.531
C15	C13	1.502	1.530
C1	H1	1.080	1.080
C10	H2	1.100	1.090
C10	H3	1.100	1.090
C11	H4	1.100	1.090
C12	H5	1.100	1.090
C12	H6	1.100	1.090
C12	H7	1.100	1.090
C13	H8	1.100	1.090
C13	H9	1.100	1.090
C13	H10	1.100	1.091
C14	H11	1.100	1.090
C14	H12	1.100	1.089
C14	H13	1.100	1.090
C2	H14	1.080	1.080
C3	H15	1.080	1.081
C4	H16	1.080	1.081
C8	H17	1.100	1.090
C8	H18	1.100	1.090
C9	H19	1.100	1.089
C9	H20	1.100	1.091

Bond Angles for M5J

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C9	C8	H17	110.0	111.0
C9	C8	H18	110.0	111.0
C9	C11	N16	106.4	107.3
C9	C11	H4	108.8	110.1
C8	C10	N16	104.5	104.8
C8	C10	H2	110.7	110.4
C8	C10	H3	110.7	110.4
C5	C11	N16	112.6	109.8
C11	C5	C2	117.5	120.0
C11	C5	C4	122.6	120.0
C5	C11	H4	109.1	109.8
C10	N16	C11	112.8	108.7
C11	N16	C7	115.5	125.6
N16	C11	H4	109.8	109.9
C2	C5	C4	119.9	120.0
C5	C2	H14	119.7	119.9
C2	C1	C3	119.7	120.0
C2	C1	H1	120.1	119.9
C5	C4	C6	119.3	120.0
C5	C4	H16	120.4	120.0
C1	C3	C6	119.8	120.0
C3	C1	H1	120.2	120.0
C1	C3	H15	120.1	120.0
C10	N16	C7	122.3	125.6
N16	C10	H2	110.7	110.4
N16	C10	H3	110.7	110.4
C3	C6	C4	120.6	119.9
C4	C6	F18	121.6	120.0
C6	C4	H16	120.3	120.0
C3	C6	F18	117.8	120.1
C6	C3	H15	120.1	120.0
C12	C15	C14	107.9	109.5
C12	C15	C13	108.9	109.5
C15	C12	H5	109.5	109.5
C15	C12	H6	109.5	109.5
C15	C12	H7	109.5	109.4
C15	C14	H11	109.5	109.4
C15	C14	H12	109.5	109.5
C15	C14	H13	109.5	109.5
C15	C13	H8	109.5	109.5
C15	C13	H9	109.4	109.5
C15	C13	H10	109.5	109.5
H2	C10	H3	109.5	110.4
H5	C12	H6	109.5	109.5
H5	C12	H7	109.4	109.5
H6	C12	H7	109.5	109.5
H8	C13	H9	109.5	109.5
H8	C13	H10	109.4	109.5
H9	C13	H10	109.5	109.4
H11	C14	H12	109.4	109.5
H11	C14	H13	109.5	109.5
H12	C14	H13	109.5	109.5
H17	C8	H18	109.5	110.9
H19	C9	H20	109.5	110.8

Torsion Angles for M5J

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C8	C9	C11	N16	355.4	337.7
C8	C9	C11	H4	113.7	97.3
C9	C8	C10	N16	13.7	323.0
C9	C8	C10	H2	132.9	81.8
C9	C8	C10	H3	254.5	204.1
H17	C8	C9	H18	239.4	123.9
C5	C11	C9	N16	237.7	240.6
C5	C11	C9	H4	119.5	121.1
C10	N16	C11	C9	14.3	359.0
C9	C11	N16	C7	161.6	179.0
N16	C11	C9	H4	241.7	240.4
C8	C10	N16	C11	342.4	24.1
C8	C10	N16	C7	197.6	204.1
N16	C10	C8	H2	240.8	241.2
N16	C10	C8	H3	119.2	118.9
H2	C10	C8	H3	238.4	237.7
C9	C11	C5	N16	118.5	117.8
C9	C11	C5	H4	240.7	238.8
C10	N16	C11	C5	134.9	118.3
C5	C11	N16	C7	282.2	298.3
N16	C11	C5	H4	122.2	121.0
C2	C5	C11	C4	180.4	180.1
C11	C5	C2	H14	359.4	359.9
C11	C5	C4	C6	180.4	180.2
C11	C5	C4	H16	0.4	359.8
C9	C11	N16	H4	117.6	119.6
N16	C11	C5	C2	132.6	140.1
N16	C11	C5	C4	312.2	320.0
C5	C11	N16	H4	238.2	239.0
C10	N16	C11	C7	212.7	180.0
C11	N16	C10	H2	223.2	265.3
C11	N16	C10	H3	101.6	143.0
C2	C5	C11	N16	132.6	140.1
C11	C5	C2	C4	179.7	179.9
C2	C5	C11	H4	10.4	19.0
C5	C2	C1	C3	0.2	360.0
C5	C2	C1	H1	180.2	179.7
C2	C5	C4	C6	0.0	0.2
C2	C5	C4	H16	180.0	179.7
C2	C1	C3	C6	0.1	359.8
C3	C1	C2	H1	180.0	180.3
C2	C1	C3	H15	180.1	179.7
C4	C5	C11	N16	312.2	320.0
C11	C5	C4	C2	180.4	180.1
C4	C5	C11	H4	190.0	198.9
C4	C5	C2	H14	179.8	180.0
C3	C6	C4	C5	0.3	359.6
C5	C4	C6	F18	180.2	180.0
C6	C4	C5	H16	180.0	180.4
C2	C1	C3	H1	180.0	179.7
C1	C3	C6	C4	359.6	0.5
C1	C3	C6	F18	179.7	180.0
C6	C3	C1	H15	180.0	180.0
C9	C11	N16	C10	14.3	359.0
C8	C10	N16	H2	119.2	118.8
C8	C10	N16	H3	240.8	241.1
C5	C11	N16	C10	134.9	118.3
C11	N16	C10	C7	144.8	180.0
C10	N16	C11	H4	256.7	239.3
H2	C10	N16	H3	121.6	122.3
C10	N16	C7	C11	144.0	180.0
C7	N16	C11	H4	44.0	59.3
C7	N16	C10	H2	78.4	85.3
C7	N16	C10	H3	316.8	323.0
C5	C4	C6	H16	180.0	179.6
C3	C6	C4	F18	180.1	179.5
C4	C6	C3	H15	179.7	180.5
C5	C4	C6	C3	0.3	359.6
C6	C3	C1	H1	180.1	180.0
C1	C3	C6	H15	180.0	180.0
C4	C6	C3	F18	179.9	180.5
C3	C6	C4	H16	180.3	180.0
C11	N16	C7	C15	189.2	185.3
C10	N16	C7	C15	333.2	5.3
C7	C15	C12	H5	180.0	180.0
C7	C15	C12	H6	300.0	300.0
C7	C15	C12	H7	60.0	60.0
C7	C15	C14	H11	180.0	300.0
C7	C15	C14	H12	300.0	59.9
C7	C15	C14	H13	60.0	180.0
C7	C15	C13	H8	180.0	174.9
C7	C15	C13	H9	300.0	294.9
C7	C15	C13	H10	60.0	54.9
C12	C15	C14	H11	300.6	60.0
C12	C15	C14	H12	60.6	180.0
C12	C15	C14	H13	180.6	300.1
C12	C15	C13	H8	62.4	54.9
C12	C15	C13	H9	182.4	174.9
C12	C15	C13	H10	302.4	294.9
H5	C12	C15	H6	240.0	240.0
H5	C12	C15	H7	120.0	120.0
H6	C12	C15	H7	240.0	240.0
C3	C6	F18	C4	179.9	180.5
F18	C6	C4	H16	0.2	0.5
F18	C6	C3	H15	359.8	0.0
C12	C15	C14	C13	240.4	240.0
C14	C15	C12	H5	57.2	59.9
C14	C15	C12	H6	177.2	180.0
C14	C15	C12	H7	297.3	300.0
C14	C15	C13	H8	303.3	294.9
C14	C15	C13	H9	63.4	54.9
C14	C15	C13	H10	183.4	174.9
H11	C14	C15	H12	240.0	240.0
H11	C14	C15	H13	120.0	119.9
H12	C14	C15	H13	240.0	239.9
C12	C15	C13	C14	119.1	120.0
C13	C15	C12	H5	295.8	300.0
C13	C15	C12	H6	55.8	60.0
C13	C15	C12	H7	175.8	180.0
H8	C13	C15	H9	240.0	240.0
H8	C13	C15	H10	120.0	120.0
H9	C13	C15	H10	240.0	240.0
C2	C1	H1	C3	180.0	180.3
H1	C1	C3	C6	180.1	180.0
H1	C1	C3	H15	0.1	0.0
C8	C10	H2	N16	244.6	244.6
C8	C10	H2	H3	122.3	122.4
H2	C10	N16	C11	223.2	265.3
H2	C10	N16	C7	78.4	85.3
N16	C10	H2	H3	237.7	237.7
C8	C10	H3	N16	115.4	115.4
C8	C10	H3	H2	237.7	237.7
H3	C10	N16	C11	101.6	143.0
H3	C10	N16	C7	316.8	323.0
N16	C10	H3	H2	122.3	122.3
C9	C11	H4	N16	243.9	242.1
C5	C11	H4	N16	123.9	121.0
H4	C11	C5	C2	10.4	19.0
H4	C11	C5	C4	190.0	198.9
H4	C11	N16	C7	44.0	59.3
H5	C12	C15	C14	57.2	59.9
H5	C12	C15	C13	295.8	300.0
C15	C12	H5	H6	120.0	120.0
C15	C12	H5	H7	240.0	240.1
H6	C12	H5	H7	120.0	120.1
H6	C12	C15	C14	177.2	180.0
H6	C12	C15	C13	55.8	60.0
C15	C12	H6	H5	240.0	240.0
C15	C12	H6	H7	120.0	120.0
H5	C12	H6	H7	240.0	240.0
H7	C12	C15	C14	297.3	300.0
H7	C12	C15	C13	175.8	180.0
C15	C12	H7	H5	120.0	120.0
C15	C12	H7	H6	240.0	240.0
H5	C12	H7	H6	120.0	120.1
C15	C13	H8	H9	120.0	120.0
C15	C13	H8	H10	240.0	240.0
H9	C13	H8	H10	120.0	120.0
C15	C13	H9	H8	240.0	240.0
C15	C13	H9	H10	120.0	120.0
H8	C13	H9	H10	240.0	240.0
C15	C13	H10	H8	120.0	120.0
C15	C13	H10	H9	240.0	240.0
H8	C13	H10	H9	120.0	120.0
C15	C14	H11	H12	120.0	120.0
C15	C14	H11	H13	240.0	240.1
H12	C14	H11	H13	120.0	120.1
C15	C14	H12	H11	240.0	240.1
C15	C14	H12	H13	120.0	120.0
H11	C14	H12	H13	240.0	240.0
C15	C14	H13	H11	120.0	119.9
C15	C14	H13	H12	240.0	239.9
H11	C14	H13	H12	119.9	120.0
H14	C2	C5	C4	179.8	180.0
H14	C2	C1	C3	180.2	180.0
H14	C2	C1	H1	0.2	359.7
C1	C3	H15	C6	180.0	180.0
H15	C3	C1	H1	0.1	0.0
H15	C3	C6	C4	179.7	180.5
H15	C3	C6	F18	359.8	0.0
C5	C4	H16	C6	180.0	180.4
H16	C4	C6	F18	0.2	0.5
C9	C8	H17	H18	120.9	236.1
H17	C8	C10	N16	254.0	81.1
H17	C8	C10	H2	13.2	199.9
H17	C8	C10	H3	134.8	322.2
C9	C8	H18	H17	239.1	123.9
H18	C8	C10	N16	133.4	204.9
H18	C8	C10	H2	252.6	323.7
H18	C8	C10	H3	14.2	86.1
H19	C9	C8	H17	233.4	159.0
H19	C9	C8	H18	354.0	35.2
H19	C9	C11	N16	236.0	96.1
H19	C9	C11	H4	354.2	215.7
H20	C9	C8	H17	354.5	35.8
H20	C9	C8	H18	115.1	271.9
H20	C9	C11	N16	114.8	219.4
H20	C9	C11	H4	233.1	339.0