PDB Chemical Component M3L

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for M3L

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CA 1.473 1.469
N H 1.021 1.009
N H2 1.019 1.008
CA CB 1.542 1.530
CA C 1.520 1.507
CA HA 1.115 1.090
CB CG 1.545 1.531
CB HB2 1.114 1.090
CB HB3 1.115 1.089
CG CD 1.592 1.530
CG HG2 1.115 1.089
CG HG3 1.114 1.090
CD CE 1.526 1.530
CD HD2 1.115 1.090
CD HD3 1.115 1.090
CE NZ 1.499 1.468
CE HE2 1.115 1.089
CE HE3 1.115 1.090
NZ CM1 1.498 1.469
NZ CM2 1.497 1.469
NZ CM3 1.495 1.470
C O 1.241 1.208
C OXT 1.282 1.342
OXT HXT 0.951 0.967
CM1 HM11 1.114 1.090
CM1 HM12 1.115 1.089
CM1 HM13 1.115 1.090
CM2 HM21 1.114 1.090
CM2 HM22 1.115 1.090
CM2 HM23 1.115 1.089
CM3 HM31 1.114 1.090
CM3 HM32 1.115 1.090
CM3 HM33 1.115 1.090

Bond Angles for M3L

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA N H 113.9 106.7
CA N H2 110.6 106.7
N CA CB 113.9 109.5
N CA C 114.0 109.5
N CA HA 103.5 109.5
H N H2 110.5 106.7
CB CA C 111.2 109.5
CB CA HA 106.7 109.5
CA CB CG 111.4 109.5
CA CB HB2 111.5 109.5
CA CB HB3 111.5 109.5
C CA HA 106.7 109.4
CA C O 118.3 120.0
CA C OXT 114.4 120.0
CG CB HB2 111.6 109.5
CG CB HB3 111.5 109.5
CB CG CD 103.6 109.5
CB CG HG2 114.4 109.4
CB CG HG3 114.4 109.5
HB2 CB HB3 98.9 109.5
CD CG HG2 114.5 109.5
CD CG HG3 114.5 109.5
CG CD CE 107.0 109.5
CG CD HD2 113.1 109.5
CG CD HD3 113.1 109.5
HG2 CG HG3 96.1 109.5
CE CD HD2 113.2 109.5
CE CD HD3 113.2 109.5
CD CE NZ 110.8 109.5
CD CE HE2 111.7 109.4
CD CE HE3 111.7 109.4
HD2 CD HD3 97.3 109.5
NZ CE HE2 111.8 109.6
NZ CE HE3 111.8 109.5
CE NZ CM1 102.8 109.5
CE NZ CM2 115.9 109.5
CE NZ CM3 107.9 109.4
HE2 CE HE3 98.6 109.5
CM1 NZ CM2 105.7 109.5
CM1 NZ CM3 113.2 109.4
NZ CM1 HM11 102.8 109.4
NZ CM1 HM12 114.7 109.5
NZ CM1 HM13 114.8 109.5
CM2 NZ CM3 111.2 109.5
NZ CM2 HM21 115.9 109.5
NZ CM2 HM22 109.8 109.4
NZ CM2 HM23 109.8 109.4
NZ CM3 HM31 107.9 109.4
NZ CM3 HM32 112.8 109.5
NZ CM3 HM33 112.8 109.5
O C OXT 127.3 120.0
C OXT HXT 114.3 120.0
HM11 CM1 HM12 114.8 109.5
HM11 CM1 HM13 114.8 109.4
HM12 CM1 HM13 95.7 109.5
HM21 CM2 HM22 109.9 109.5
HM21 CM2 HM23 109.9 109.5
HM22 CM2 HM23 100.3 109.5
HM31 CM3 HM32 112.8 109.5
HM31 CM3 HM33 112.8 109.5
HM32 CM3 HM33 97.6 109.5

Torsion Angles for M3L

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H N CA H2 125.2 246.2
CB CA N C 230.9 240.0
CB CA N HA 115.4 120.0
N CA CB CG 308.2 295.0
N CA CB HB2 73.5 175.0
N CA CB HB3 183.0 55.0
C CA N HA 244.6 240.1
N CA C O 159.4 339.9
N CA C OXT 337.5 160.0
CA N H H2 234.8 113.8
H N CA CB 180.0 300.0
H N CA C 309.1 60.0
H N CA HA 64.6 179.9
CA N H2 H 127.1 246.2
H2 N CA CB 54.8 53.8
H2 N CA C 183.9 173.8
H2 N CA HA 299.3 293.7
CB CA N H 180.0 300.0
CB CA N H2 54.8 53.8
N CA CB C 130.5 120.0
N CA CB HA 246.5 240.0
C CA CB HA 116.0 120.0
CB CA C O 289.9 100.0
CB CA C OXT 108.0 280.0
CG CB CA HB2 234.7 120.0
CG CB CA HB3 125.3 240.0
CA CB CG CD 213.7 180.0
CA CB CG HG2 338.9 60.0
CA CB CG HG3 88.4 300.0
HB2 CB CA HB3 250.6 120.0
C CA N H 309.1 60.0
C CA N H2 183.9 173.8
N CA C CB 229.5 240.0
N CA C HA 113.5 120.0
CB CA C HA 244.0 240.0
C CA CB CG 177.7 175.0
C CA CB HB2 303.0 55.0
C CA CB HB3 52.5 295.0
O C CA OXT 181.9 179.9
CA C OXT HXT 180.0 180.0
HA CA N H 64.6 179.9
HA CA N H2 299.3 293.7
N CA HA CB 120.5 120.0
N CA HA C 239.5 240.0
CB CA HA C 119.0 120.0
HA CA CB CG 61.8 55.0
HA CA CB HB2 187.0 295.0
HA CA CB HB3 296.5 175.0
HA CA C O 45.9 220.0
HA CA C OXT 224.0 40.0
CG CB CA C 177.7 175.0
CG CB CA HA 61.8 55.0
CA CB CG HB2 125.3 240.0
CA CB CG HB3 234.7 120.0
HB2 CB CG HB3 109.5 240.0
CD CG CB HG2 234.7 120.0
CD CG CB HG3 125.3 240.0
CB CG CD CE 156.7 180.0
CB CG CD HD2 282.0 60.0
CB CG CD HD3 31.4 300.1
HG2 CG CB HG3 250.5 120.0
HB2 CB CA C 303.0 55.0
HB2 CB CA HA 187.0 295.0
CA CB HB2 CG 234.8 120.0
CA CB HB2 HB3 117.4 240.0
CG CB HB2 HB3 242.6 120.0
HB2 CB CG CD 88.4 300.0
HB2 CB CG HG2 213.7 180.0
HB2 CB CG HG3 323.1 60.0
HB3 CB CA C 52.5 295.0
HB3 CB CA HA 296.5 175.0
CA CB HB3 CG 125.2 240.0
CA CB HB3 HB2 242.6 120.0
CG CB HB3 HB2 117.5 240.0
HB3 CB CG CD 338.9 60.0
HB3 CB CG HG2 104.2 300.0
HB3 CB CG HG3 213.7 180.0
CD CG CB HB2 88.4 300.0
CD CG CB HB3 338.9 60.0
CB CG CD HG2 125.2 240.1
CB CG CD HG3 234.8 120.0
HG2 CG CD HG3 109.5 239.9
CE CD CG HD2 234.7 120.0
CE CD CG HD3 125.2 240.0
CG CD CE NZ 147.6 180.0
CG CD CE HE2 272.9 59.9
CG CD CE HE3 22.3 300.0
HD2 CD CG HD3 250.5 120.0
HG2 CG CB HB2 213.7 180.0
HG2 CG CB HB3 104.2 300.0
CB CG HG2 CD 240.7 120.0
CB CG HG2 HG3 120.3 240.0
CD CG HG2 HG3 239.6 120.1
HG2 CG CD CE 31.5 300.0
HG2 CG CD HD2 156.8 180.0
HG2 CG CD HD3 266.2 60.0
HG3 CG CB HB2 323.1 60.0
HG3 CG CB HB3 213.7 180.0
CB CG HG3 CD 119.3 240.0
CB CG HG3 HG2 239.7 119.9
CD CG HG3 HG2 120.4 239.9
HG3 CG CD CE 281.9 60.0
HG3 CG CD HD2 47.2 300.0
HG3 CG CD HD3 156.7 180.1
CE CD CG HG2 31.5 300.0
CE CD CG HG3 281.9 60.0
CG CD CE HD2 125.3 240.0
CG CD CE HD3 234.8 120.0
HD2 CD CE HD3 109.5 240.0
NZ CE CD HE2 234.7 120.1
NZ CE CD HE3 125.3 240.0
CD CE NZ CM1 85.2 60.0
CD CE NZ CM2 199.9 300.0
CD CE NZ CM3 325.3 180.0
HE2 CE CD HE3 250.6 119.9
HD2 CD CG HG2 156.8 180.0
HD2 CD CG HG3 47.2 300.0
CG CD HD2 CE 238.1 120.0
CG CD HD2 HD3 119.0 240.0
CE CD HD2 HD3 240.9 120.0
HD2 CD CE NZ 22.4 300.0
HD2 CD CE HE2 147.7 179.9
HD2 CD CE HE3 257.0 60.0
HD3 CD CG HG2 266.2 60.0
HD3 CD CG HG3 156.7 180.1
CG CD HD3 CE 121.8 240.0
CG CD HD3 HD2 240.9 120.0
CE CD HD3 HD2 119.1 240.0
HD3 CD CE NZ 272.8 60.0
HD3 CD CE HE2 38.2 299.9
HD3 CD CE HE3 147.5 180.0
NZ CE CD HD2 22.4 300.0
NZ CE CD HD3 272.8 60.0
CD CE NZ HE2 125.3 240.0
CD CE NZ HE3 234.7 119.9
HE2 CE NZ HE3 109.5 240.0
CM1 NZ CE CM2 245.3 120.1
CM1 NZ CE CM3 119.9 240.0
CE NZ CM1 HM11 180.0 299.9
CE NZ CM1 HM12 305.3 59.9
CE NZ CM1 HM13 54.7 180.0
CM2 NZ CE CM3 234.6 120.0
CE NZ CM2 HM21 180.0 180.0
CE NZ CM2 HM22 305.3 300.0
CE NZ CM2 HM23 54.7 60.0
CE NZ CM3 HM31 180.0 300.0
CE NZ CM3 HM32 305.3 60.0
CE NZ CM3 HM33 54.7 180.0
HE2 CE CD HD2 147.7 179.9
HE2 CE CD HD3 38.2 299.9
CD CE HE2 NZ 235.2 120.0
CD CE HE2 HE3 117.6 240.1
NZ CE HE2 HE3 242.3 120.1
HE2 CE NZ CM1 320.0 180.0
HE2 CE NZ CM2 74.7 60.0
HE2 CE NZ CM3 200.1 300.0
HE3 CE CD HD2 257.0 60.0
HE3 CE CD HD3 147.5 180.0
CD CE HE3 NZ 124.8 240.0
CD CE HE3 HE2 242.5 119.9
NZ CE HE3 HE2 117.7 239.9
HE3 CE NZ CM1 210.5 300.1
HE3 CE NZ CM2 325.2 180.0
HE3 CE NZ CM3 90.6 60.0
CM1 NZ CE HE2 320.0 180.0
CM1 NZ CE HE3 210.5 300.1
CE NZ CM1 CM2 121.9 240.0
CE NZ CM1 CM3 243.9 120.0
CM2 NZ CM1 CM3 121.9 240.0
CM1 NZ CM2 HM21 293.0 60.0
CM1 NZ CM2 HM22 58.3 180.0
CM1 NZ CM2 HM23 167.8 300.0
CM1 NZ CM3 HM31 66.9 60.0
CM1 NZ CM3 HM32 192.2 180.0
CM1 NZ CM3 HM33 301.6 300.0
HM11 CM1 NZ HM12 234.7 240.0
HM11 CM1 NZ HM13 125.3 119.9
HM12 CM1 NZ HM13 250.6 239.9
CM2 NZ CE HE2 74.7 60.0
CM2 NZ CE HE3 325.2 180.0
CE NZ CM2 CM1 247.0 120.1
CE NZ CM2 CM3 123.7 240.0
CM1 NZ CM2 CM3 236.8 120.0
CM2 NZ CM1 HM11 58.1 60.0
CM2 NZ CM1 HM12 183.4 180.0
CM2 NZ CM1 HM13 292.8 300.1
CM2 NZ CM3 HM31 308.1 180.0
CM2 NZ CM3 HM32 73.5 300.0
CM2 NZ CM3 HM33 182.8 60.0
HM21 CM2 NZ HM22 234.7 240.0
HM21 CM2 NZ HM23 125.3 120.0
HM22 CM2 NZ HM23 250.6 240.0
CM3 NZ CE HE2 200.1 300.0
CM3 NZ CE HE3 90.6 60.0
CE NZ CM3 CM1 113.1 240.0
CE NZ CM3 CM2 231.8 120.0
CM1 NZ CM3 CM2 118.8 240.0
CM3 NZ CM1 HM11 296.2 180.0
CM3 NZ CM1 HM12 61.5 300.0
CM3 NZ CM1 HM13 170.8 60.1
CM3 NZ CM2 HM21 56.3 300.0
CM3 NZ CM2 HM22 181.6 60.0
CM3 NZ CM2 HM23 291.0 180.0
HM31 CM3 NZ HM32 234.7 240.0
HM31 CM3 NZ HM33 125.3 120.0
HM32 CM3 NZ HM33 250.6 240.0
O C CA HA 45.9 220.0
CA C O OXT 177.8 180.1
O C OXT HXT 357.9 0.1
OXT C CA HA 224.0 40.0
CA C OXT O 182.1 179.9
HM11 CM1 NZ CM2 58.1 60.0
HM11 CM1 NZ CM3 296.2 180.0
NZ CM1 HM11 HM12 125.2 120.0
NZ CM1 HM11 HM13 234.7 240.1
HM12 CM1 HM11 HM13 109.4 120.1
HM12 CM1 NZ CM2 183.4 180.0
HM12 CM1 NZ CM3 61.5 300.0
NZ CM1 HM12 HM11 241.3 240.0
NZ CM1 HM12 HM13 120.6 120.0
HM11 CM1 HM12 HM13 239.4 240.0
HM13 CM1 NZ CM2 292.8 300.1
HM13 CM1 NZ CM3 170.8 60.1
NZ CM1 HM13 HM11 118.8 119.9
NZ CM1 HM13 HM12 239.4 240.0
HM11 CM1 HM13 HM12 120.6 120.0
HM21 CM2 NZ CM3 56.3 300.0
NZ CM2 HM21 HM22 125.2 120.0
NZ CM2 HM21 HM23 234.8 240.0
HM22 CM2 HM21 HM23 109.5 120.1
HM22 CM2 NZ CM3 181.6 60.0
NZ CM2 HM22 HM21 231.4 240.0
NZ CM2 HM22 HM23 115.6 120.0
HM21 CM2 HM22 HM23 244.2 239.9
HM23 CM2 NZ CM3 291.0 180.0
NZ CM2 HM23 HM21 128.6 120.0
NZ CM2 HM23 HM22 244.4 240.0
HM21 CM2 HM23 HM22 115.7 120.1
NZ CM3 HM31 HM32 125.3 120.0
NZ CM3 HM31 HM33 234.7 240.0
HM32 CM3 HM31 HM33 109.4 120.0
NZ CM3 HM32 HM31 237.4 240.0
NZ CM3 HM32 HM33 118.7 120.0
HM31 CM3 HM32 HM33 241.3 240.0
NZ CM3 HM33 HM31 122.6 120.0
NZ CM3 HM33 HM32 241.3 240.0
HM31 CM3 HM33 HM32 118.7 120.0