PDB Chemical Component M3B
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for M3B
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C11 |
C12 |
1.535 |
1.530 |
C11 |
N10 |
1.465 |
1.469 |
C12 |
O13 |
1.400 |
1.429 |
O13 |
C14 |
1.407 |
1.430 |
N08 |
C07 |
1.268 |
1.469 |
N10 |
C07 |
1.451 |
1.468 |
C07 |
N06 |
1.467 |
1.469 |
C04 |
N05 |
1.457 |
1.469 |
C04 |
C03 |
1.533 |
1.530 |
C02 |
C03 |
1.530 |
1.530 |
C02 |
C01 |
1.539 |
1.531 |
N06 |
C01 |
1.459 |
1.469 |
C01 |
H01 |
1.100 |
1.090 |
C01 |
H02 |
1.100 |
1.089 |
C02 |
H04 |
1.100 |
1.089 |
C02 |
H03 |
1.100 |
1.090 |
C03 |
H06 |
1.100 |
1.089 |
C03 |
H05 |
1.100 |
1.090 |
C04 |
H08 |
1.100 |
1.090 |
C04 |
H07 |
1.100 |
1.090 |
C07 |
H1 |
1.100 |
1.090 |
C11 |
H12 |
1.100 |
1.091 |
C11 |
H11 |
1.100 |
1.090 |
C12 |
H13 |
1.100 |
1.090 |
C12 |
H14 |
1.100 |
1.090 |
C14 |
H17 |
1.100 |
1.090 |
C14 |
H15 |
1.100 |
1.090 |
C14 |
H16 |
1.100 |
1.090 |
N05 |
H18 |
1.000 |
1.008 |
N05 |
H19 |
1.000 |
1.008 |
N06 |
H2 |
1.000 |
1.009 |
N08 |
H3 |
1.000 |
1.009 |
N08 |
H2C |
1.000 |
1.009 |
N10 |
H4 |
1.000 |
1.009 |
Bond Angles for M3B
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C12 |
C11 |
N10 |
113.6 |
109.5 |
C11 |
C12 |
O13 |
109.5 |
109.4 |
C12 |
C11 |
H12 |
108.4 |
109.5 |
C12 |
C11 |
H11 |
108.4 |
109.5 |
C11 |
C12 |
H13 |
109.4 |
109.5 |
C11 |
C12 |
H14 |
109.5 |
109.4 |
N10 |
C11 |
H12 |
108.4 |
109.4 |
N10 |
C11 |
H11 |
108.4 |
109.5 |
C11 |
N10 |
H4 |
107.7 |
110.9 |
C12 |
O13 |
C14 |
113.0 |
114.0 |
O13 |
C12 |
H13 |
109.5 |
109.5 |
O13 |
C12 |
H14 |
109.4 |
109.5 |
O13 |
C14 |
H17 |
109.5 |
109.4 |
O13 |
C14 |
H15 |
109.5 |
109.5 |
O13 |
C14 |
H16 |
109.4 |
109.5 |
N08 |
C07 |
H1 |
113.0 |
109.5 |
N10 |
C07 |
H1 |
109.9 |
109.5 |
N06 |
C07 |
H1 |
109.7 |
109.4 |
C07 |
N06 |
H2 |
108.3 |
111.0 |
N05 |
C04 |
H08 |
109.1 |
109.4 |
N05 |
C04 |
H07 |
109.1 |
109.5 |
C04 |
N05 |
H18 |
109.5 |
111.0 |
C04 |
N05 |
H19 |
109.5 |
111.0 |
C04 |
C03 |
H06 |
109.4 |
109.5 |
C04 |
C03 |
H05 |
109.4 |
109.5 |
C03 |
C02 |
H04 |
108.7 |
109.5 |
C03 |
C02 |
H03 |
108.7 |
109.5 |
C02 |
C03 |
H06 |
109.4 |
109.5 |
C02 |
C03 |
H05 |
109.4 |
109.4 |
C02 |
C01 |
H01 |
108.6 |
109.5 |
C02 |
C01 |
H02 |
108.5 |
109.5 |
N06 |
C01 |
H01 |
108.6 |
109.4 |
N06 |
C01 |
H02 |
108.6 |
109.5 |
H01 |
C01 |
H02 |
109.5 |
109.5 |
H04 |
C02 |
H03 |
109.5 |
109.5 |
H06 |
C03 |
H05 |
109.5 |
109.5 |
H08 |
C04 |
H07 |
109.5 |
109.5 |
H12 |
C11 |
H11 |
109.5 |
109.5 |
H13 |
C12 |
H14 |
109.5 |
109.5 |
H17 |
C14 |
H15 |
109.5 |
109.5 |
H17 |
C14 |
H16 |
109.5 |
109.5 |
H15 |
C14 |
H16 |
109.5 |
109.5 |
H18 |
N05 |
H19 |
109.4 |
111.1 |
H3 |
N08 |
H2C |
109.5 |
111.0 |
Torsion Angles for M3B
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
N10 |
C11 |
C12 |
H12 |
239.4 |
240.0 |
N10 |
C11 |
C12 |
H11 |
120.6 |
120.0 |
C12 |
C11 |
N10 |
H4 |
178.8 |
304.0 |
C11 |
C12 |
O13 |
C14 |
168.0 |
180.0 |
O13 |
C12 |
C11 |
H13 |
240.0 |
240.0 |
O13 |
C12 |
C11 |
H14 |
120.0 |
120.0 |
H12 |
C11 |
C12 |
H11 |
241.2 |
240.0 |
H13 |
C12 |
C11 |
H14 |
240.0 |
239.9 |
N10 |
C11 |
C12 |
O13 |
294.9 |
65.0 |
C12 |
C11 |
N10 |
H12 |
120.6 |
120.0 |
C12 |
C11 |
N10 |
H11 |
239.4 |
239.9 |
N10 |
C11 |
C12 |
H13 |
55.0 |
185.0 |
N10 |
C11 |
C12 |
H14 |
174.9 |
305.1 |
C11 |
N10 |
C07 |
H1 |
280.0 |
315.0 |
H12 |
C11 |
N10 |
H11 |
118.8 |
119.9 |
O13 |
C12 |
C11 |
N10 |
294.9 |
65.0 |
O13 |
C12 |
C11 |
H12 |
55.5 |
185.0 |
O13 |
C12 |
C11 |
H11 |
174.3 |
305.0 |
C11 |
C12 |
O13 |
H13 |
120.0 |
120.0 |
C11 |
C12 |
O13 |
H14 |
240.0 |
240.1 |
C12 |
O13 |
C14 |
H17 |
180.0 |
60.0 |
C12 |
O13 |
C14 |
H15 |
300.0 |
180.0 |
C12 |
O13 |
C14 |
H16 |
60.0 |
300.0 |
H13 |
C12 |
O13 |
H14 |
120.0 |
120.1 |
C14 |
O13 |
C12 |
H13 |
48.0 |
60.1 |
C14 |
O13 |
C12 |
H14 |
288.0 |
300.0 |
H17 |
C14 |
O13 |
H15 |
240.0 |
240.0 |
H17 |
C14 |
O13 |
H16 |
120.0 |
120.0 |
H15 |
C14 |
O13 |
H16 |
240.0 |
240.0 |
N10 |
C07 |
N08 |
H1 |
237.2 |
240.0 |
N06 |
C07 |
N08 |
H1 |
120.9 |
120.0 |
N08 |
C07 |
N06 |
H2 |
279.4 |
49.0 |
N08 |
C07 |
N10 |
H1 |
124.6 |
120.0 |
N06 |
C07 |
N10 |
H1 |
240.7 |
240.0 |
N10 |
C07 |
N06 |
H2 |
161.9 |
289.0 |
N08 |
C07 |
N06 |
H1 |
237.0 |
240.0 |
N10 |
C07 |
N06 |
H1 |
119.5 |
120.0 |
C07 |
N06 |
C01 |
H01 |
136.2 |
60.0 |
C07 |
N06 |
C01 |
H02 |
17.3 |
300.0 |
N05 |
C04 |
C03 |
H06 |
199.4 |
60.0 |
N05 |
C04 |
C03 |
H05 |
319.3 |
300.0 |
H08 |
C04 |
N05 |
H07 |
240.5 |
120.0 |
H18 |
N05 |
C04 |
H19 |
240.0 |
236.0 |
C04 |
C03 |
C02 |
H04 |
299.0 |
60.0 |
C04 |
C03 |
C02 |
H03 |
58.1 |
300.0 |
C02 |
C03 |
C04 |
H06 |
240.0 |
120.0 |
C02 |
C03 |
C04 |
H05 |
120.0 |
240.0 |
H06 |
C03 |
C04 |
H05 |
240.1 |
120.0 |
C04 |
C03 |
C02 |
H06 |
120.1 |
240.0 |
C04 |
C03 |
C02 |
H05 |
240.0 |
120.0 |
C03 |
C02 |
C01 |
H01 |
37.1 |
299.9 |
C03 |
C02 |
C01 |
H02 |
156.0 |
60.0 |
H04 |
C02 |
C03 |
H03 |
240.9 |
120.0 |
H06 |
C03 |
C02 |
H05 |
119.9 |
240.0 |
N06 |
C01 |
C02 |
H01 |
239.4 |
240.1 |
N06 |
C01 |
C02 |
H02 |
120.5 |
120.0 |
H01 |
C01 |
C02 |
H02 |
241.1 |
240.0 |
C02 |
C01 |
N06 |
H01 |
120.6 |
120.0 |
C02 |
C01 |
N06 |
H02 |
239.5 |
240.0 |
H01 |
C01 |
N06 |
H02 |
118.9 |
120.0 |
C02 |
C01 |
H01 |
H02 |
118.3 |
120.1 |
N06 |
C01 |
H01 |
H02 |
241.7 |
240.0 |
C02 |
C01 |
H02 |
H01 |
241.7 |
240.0 |
N06 |
C01 |
H02 |
H01 |
118.4 |
120.0 |
C03 |
C02 |
H04 |
H03 |
118.6 |
240.0 |
H04 |
C02 |
C03 |
H06 |
179.0 |
180.0 |
H04 |
C02 |
C03 |
H05 |
59.1 |
300.0 |
H04 |
C02 |
C01 |
H01 |
276.6 |
60.0 |
H04 |
C02 |
C01 |
H02 |
35.5 |
180.0 |
C03 |
C02 |
H03 |
H04 |
241.4 |
120.0 |
H03 |
C02 |
C03 |
H06 |
298.1 |
60.0 |
H03 |
C02 |
C03 |
H05 |
178.2 |
180.0 |
H03 |
C02 |
C01 |
H01 |
157.5 |
180.0 |
H03 |
C02 |
C01 |
H02 |
276.4 |
300.0 |
C04 |
C03 |
H06 |
H05 |
119.8 |
240.0 |
H06 |
C03 |
C02 |
H04 |
179.0 |
180.0 |
H06 |
C03 |
C02 |
H03 |
298.1 |
60.0 |
C02 |
C03 |
H06 |
H05 |
240.2 |
120.0 |
C04 |
C03 |
H05 |
H06 |
240.1 |
120.0 |
H05 |
C03 |
C02 |
H04 |
59.1 |
300.0 |
H05 |
C03 |
C02 |
H03 |
178.2 |
180.0 |
C02 |
C03 |
H05 |
H06 |
119.8 |
240.0 |
N05 |
C04 |
H08 |
H07 |
119.3 |
240.0 |
H08 |
C04 |
N05 |
H18 |
300.2 |
296.0 |
H08 |
C04 |
N05 |
H19 |
60.2 |
60.0 |
H08 |
C04 |
C03 |
H06 |
79.1 |
180.0 |
H08 |
C04 |
C03 |
H05 |
199.1 |
60.0 |
N05 |
C04 |
H07 |
H08 |
240.7 |
120.0 |
H07 |
C04 |
N05 |
H18 |
59.8 |
176.0 |
H07 |
C04 |
N05 |
H19 |
179.7 |
300.0 |
H07 |
C04 |
C03 |
H06 |
319.6 |
300.0 |
H07 |
C04 |
C03 |
H05 |
79.5 |
179.9 |
H1 |
C07 |
N06 |
H2 |
42.4 |
169.0 |
C12 |
C11 |
H12 |
N10 |
236.2 |
240.0 |
H12 |
C11 |
C12 |
O13 |
55.5 |
185.0 |
C12 |
C11 |
H12 |
H11 |
118.1 |
120.0 |
H12 |
C11 |
C12 |
H13 |
175.6 |
305.0 |
H12 |
C11 |
C12 |
H14 |
295.5 |
65.0 |
N10 |
C11 |
H12 |
H11 |
241.9 |
240.1 |
H12 |
C11 |
N10 |
H4 |
58.2 |
184.0 |
C12 |
C11 |
H11 |
N10 |
123.8 |
120.1 |
H11 |
C11 |
C12 |
O13 |
174.3 |
305.0 |
C12 |
C11 |
H11 |
H12 |
241.9 |
240.0 |
H11 |
C11 |
C12 |
H13 |
294.3 |
65.0 |
H11 |
C11 |
C12 |
H14 |
54.3 |
185.0 |
N10 |
C11 |
H11 |
H12 |
118.1 |
119.9 |
H11 |
C11 |
N10 |
H4 |
299.4 |
64.1 |
H13 |
C12 |
C11 |
N10 |
55.0 |
185.0 |
C11 |
C12 |
H13 |
O13 |
239.9 |
240.1 |
H13 |
C12 |
C11 |
H12 |
175.6 |
305.0 |
H13 |
C12 |
C11 |
H11 |
294.3 |
65.0 |
C11 |
C12 |
H13 |
H14 |
120.0 |
120.0 |
H13 |
C12 |
O13 |
C14 |
48.0 |
60.1 |
O13 |
C12 |
H13 |
H14 |
240.0 |
239.9 |
H14 |
C12 |
C11 |
N10 |
174.9 |
305.1 |
C11 |
C12 |
H14 |
O13 |
120.0 |
119.9 |
H14 |
C12 |
C11 |
H12 |
295.5 |
65.0 |
H14 |
C12 |
C11 |
H11 |
54.3 |
185.0 |
C11 |
C12 |
H14 |
H13 |
240.0 |
240.0 |
H14 |
C12 |
O13 |
C14 |
288.0 |
300.0 |
O13 |
C12 |
H14 |
H13 |
120.0 |
120.1 |
O13 |
C14 |
H17 |
H15 |
120.0 |
120.0 |
O13 |
C14 |
H17 |
H16 |
240.0 |
240.0 |
H15 |
C14 |
H17 |
H16 |
120.0 |
120.0 |
O13 |
C14 |
H15 |
H17 |
240.0 |
240.1 |
O13 |
C14 |
H15 |
H16 |
120.0 |
120.0 |
H17 |
C14 |
H15 |
H16 |
240.0 |
240.0 |
O13 |
C14 |
H16 |
H17 |
120.0 |
120.0 |
O13 |
C14 |
H16 |
H15 |
240.0 |
240.0 |
H17 |
C14 |
H16 |
H15 |
120.0 |
120.0 |
H18 |
N05 |
C04 |
H08 |
300.2 |
296.0 |
H18 |
N05 |
C04 |
H07 |
59.8 |
176.0 |
C04 |
N05 |
H18 |
H19 |
120.0 |
124.0 |
H19 |
N05 |
C04 |
H08 |
60.2 |
60.0 |
H19 |
N05 |
C04 |
H07 |
179.7 |
300.0 |
C04 |
N05 |
H19 |
H18 |
240.0 |
236.0 |
H2 |
N06 |
C07 |
H1 |
42.4 |
169.0 |
H2 |
N06 |
C01 |
H01 |
15.5 |
296.0 |
H2 |
N06 |
C01 |
H02 |
256.6 |
176.1 |
H3 |
N08 |
C07 |
H1 |
302.8 |
56.1 |
H2C |
N08 |
C07 |
H1 |
62.8 |
180.0 |
H4 |
N10 |
C11 |
H12 |
58.2 |
184.0 |
H4 |
N10 |
C11 |
H11 |
299.4 |
64.1 |
H4 |
N10 |
C07 |
H1 |
159.0 |
191.0 |