PDB Chemical Component M35
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for M35
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
C1 |
1.463 |
1.383 |
| C1 |
C6 |
1.470 |
1.382 |
| C1 |
H1 |
1.080 |
1.080 |
| C11 |
F1 |
1.311 |
1.399 |
| N6 |
N1 |
1.369 |
1.401 |
| C13 |
N1 |
1.375 |
1.370 |
| N1 |
C4 |
1.389 |
1.400 |
| C9 |
S1 |
1.799 |
1.814 |
| O5 |
S1 |
1.435 |
1.422 |
| O4 |
S1 |
1.432 |
1.420 |
| S1 |
C21 |
1.789 |
1.762 |
| C3 |
C2 |
1.469 |
1.381 |
| C2 |
H2 |
1.080 |
1.080 |
| F2 |
C11 |
1.329 |
1.399 |
| C3 |
C4 |
1.470 |
1.388 |
| C3 |
H3 |
1.080 |
1.079 |
| F3 |
C11 |
1.302 |
1.399 |
| C20 |
N3 |
1.473 |
1.469 |
| N3 |
HN3 |
1.000 |
1.009 |
| N3 |
HN3A |
1.000 |
1.009 |
| C8 |
O3 |
1.223 |
1.216 |
| C4 |
C5 |
1.460 |
1.390 |
| F4 |
C44 |
1.331 |
1.351 |
| C5 |
C6 |
1.463 |
1.381 |
| C5 |
H5 |
1.080 |
1.080 |
| N5 |
C7 |
1.385 |
1.398 |
| N5 |
C8 |
1.364 |
1.348 |
| N5 |
HN5 |
1.000 |
0.970 |
| C6 |
C20 |
1.514 |
1.508 |
| C10 |
N6 |
1.335 |
1.310 |
| C44 |
C7 |
1.461 |
1.392 |
| C7 |
C22 |
1.450 |
1.389 |
| C13 |
C8 |
1.414 |
1.471 |
| C9 |
H9 |
1.100 |
1.090 |
| C9 |
H9A |
1.099 |
1.089 |
| C9 |
H9B |
1.100 |
1.091 |
| C11 |
C10 |
1.529 |
1.506 |
| C10 |
C12 |
1.424 |
1.393 |
| C12 |
C13 |
1.419 |
1.381 |
| C12 |
H12 |
1.080 |
1.080 |
| C44 |
C14 |
1.449 |
1.380 |
| C14 |
C16 |
1.457 |
1.394 |
| C14 |
H14 |
1.080 |
1.080 |
| C17 |
C15 |
1.471 |
1.393 |
| C15 |
C23 |
1.463 |
1.380 |
| C15 |
H15 |
1.080 |
1.080 |
| C16 |
C18 |
1.465 |
1.394 |
| C16 |
C17 |
1.517 |
1.483 |
| C21 |
C17 |
1.470 |
1.394 |
| C22 |
C18 |
1.448 |
1.379 |
| C18 |
H18 |
1.080 |
1.080 |
| C20 |
H20 |
1.100 |
1.090 |
| C20 |
H20A |
1.100 |
1.089 |
| C21 |
C24 |
1.472 |
1.380 |
| C22 |
H22 |
1.080 |
1.080 |
| C26 |
C23 |
1.457 |
1.383 |
| C23 |
H23 |
1.080 |
1.080 |
| C24 |
C26 |
1.452 |
1.384 |
| C24 |
H24 |
1.080 |
1.080 |
| C26 |
H26 |
1.080 |
1.080 |
Bond Angles for M35
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C6 |
118.0 |
120.1 |
| C2 |
C1 |
H1 |
121.0 |
119.9 |
| C6 |
C1 |
H1 |
121.0 |
120.0 |
| C1 |
C6 |
C5 |
122.7 |
120.1 |
| C1 |
C6 |
C20 |
119.2 |
120.0 |
| N1 |
C4 |
C3 |
123.2 |
120.1 |
| N1 |
C4 |
C5 |
118.5 |
120.0 |
| C9 |
S1 |
C21 |
101.1 |
104.5 |
| O5 |
S1 |
C21 |
107.6 |
104.3 |
| O4 |
S1 |
C21 |
109.4 |
104.3 |
| S1 |
C21 |
C17 |
123.5 |
120.1 |
| S1 |
C21 |
C24 |
113.6 |
120.1 |
| C3 |
C2 |
H2 |
120.4 |
120.0 |
| F2 |
C11 |
F3 |
108.7 |
109.5 |
| F2 |
C11 |
C10 |
111.0 |
109.4 |
| C4 |
C3 |
H3 |
118.8 |
120.0 |
| C3 |
C4 |
C5 |
118.3 |
119.9 |
| F3 |
C11 |
C10 |
109.6 |
109.5 |
| C20 |
N3 |
HN3 |
109.5 |
111.0 |
| C20 |
N3 |
HN3A |
109.4 |
111.0 |
| HN3 |
N3 |
HN3A |
109.5 |
111.0 |
| C4 |
C5 |
C6 |
119.2 |
119.9 |
| C4 |
C5 |
H5 |
120.4 |
120.0 |
| F4 |
C44 |
C7 |
118.1 |
120.0 |
| F4 |
C44 |
C14 |
118.9 |
120.0 |
| C6 |
C5 |
H5 |
120.4 |
120.1 |
| C5 |
C6 |
C20 |
118.1 |
119.9 |
| C7 |
N5 |
C8 |
123.7 |
120.0 |
| C7 |
N5 |
HN5 |
118.1 |
120.0 |
| N5 |
C7 |
C22 |
118.1 |
120.0 |
| C8 |
N5 |
HN5 |
118.2 |
120.0 |
| C6 |
C20 |
H20 |
108.3 |
109.4 |
| C6 |
C20 |
H20A |
108.3 |
109.5 |
| C7 |
C22 |
C18 |
117.7 |
120.1 |
| C7 |
C22 |
H22 |
121.1 |
120.0 |
| H9 |
C9 |
H9A |
109.5 |
109.5 |
| H9 |
C9 |
H9B |
109.4 |
109.4 |
| H9A |
C9 |
H9B |
109.5 |
109.5 |
| C11 |
C10 |
C12 |
125.9 |
125.6 |
| C10 |
C12 |
C13 |
105.9 |
107.7 |
| C10 |
C12 |
H12 |
127.1 |
126.1 |
| C13 |
C12 |
H12 |
127.1 |
126.2 |
| C44 |
C14 |
H14 |
121.1 |
120.0 |
| C16 |
C14 |
H14 |
121.1 |
120.1 |
| C14 |
C16 |
C18 |
118.9 |
119.9 |
| C14 |
C16 |
C17 |
120.9 |
120.0 |
| C17 |
C15 |
C23 |
120.1 |
119.9 |
| C17 |
C15 |
H15 |
119.9 |
120.1 |
| C23 |
C15 |
H15 |
120.0 |
120.0 |
| C15 |
C23 |
H23 |
118.3 |
120.0 |
| C17 |
C16 |
C18 |
120.1 |
120.1 |
| C16 |
C18 |
H18 |
118.4 |
120.0 |
| C22 |
C18 |
H18 |
118.4 |
120.0 |
| H20 |
C20 |
H20A |
110.6 |
109.5 |
| C21 |
C24 |
C26 |
120.4 |
120.1 |
| C21 |
C24 |
H24 |
119.8 |
119.9 |
| C26 |
C23 |
H23 |
118.3 |
119.9 |
| C26 |
C24 |
H24 |
119.8 |
120.0 |
| C24 |
C26 |
H26 |
121.5 |
119.8 |
Torsion Angles for M35
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
C2 |
H1 |
180.0 |
180.3 |
| C2 |
C1 |
C6 |
C5 |
359.6 |
360.0 |
| C2 |
C1 |
C6 |
C20 |
179.5 |
179.7 |
| C2 |
C1 |
C6 |
H1 |
180.0 |
179.7 |
| C4 |
C5 |
C6 |
C1 |
359.8 |
360.0 |
| C1 |
C6 |
C5 |
H5 |
179.8 |
180.0 |
| C5 |
C6 |
C1 |
C20 |
180.1 |
180.3 |
| C1 |
C6 |
C20 |
H20 |
2.9 |
330.0 |
| C1 |
C6 |
C20 |
H20A |
242.9 |
210.0 |
| C2 |
C1 |
H1 |
C6 |
180.0 |
180.3 |
| H1 |
C1 |
C6 |
C5 |
179.6 |
180.3 |
| H1 |
C1 |
C6 |
C20 |
359.5 |
0.0 |
| N1 |
C4 |
C3 |
H3 |
358.2 |
0.1 |
| C3 |
C4 |
N1 |
C5 |
180.8 |
180.0 |
| N1 |
C4 |
C5 |
C6 |
181.7 |
180.0 |
| N1 |
C4 |
C5 |
H5 |
1.7 |
0.0 |
| O5 |
S1 |
C9 |
C21 |
246.8 |
248.4 |
| O4 |
S1 |
C9 |
C21 |
116.2 |
111.6 |
| C9 |
S1 |
C21 |
C17 |
78.3 |
293.7 |
| C9 |
S1 |
C21 |
C24 |
262.3 |
113.7 |
| C9 |
S1 |
O5 |
C21 |
108.9 |
111.7 |
| O4 |
S1 |
O5 |
C21 |
236.8 |
243.3 |
| O5 |
S1 |
C21 |
C17 |
192.8 |
49.7 |
| O5 |
S1 |
C21 |
C24 |
16.9 |
229.7 |
| C9 |
S1 |
O4 |
C21 |
249.0 |
248.2 |
| O5 |
S1 |
O4 |
C21 |
122.3 |
116.7 |
| O4 |
S1 |
C21 |
C17 |
320.5 |
177.6 |
| O4 |
S1 |
C21 |
C24 |
144.5 |
357.6 |
| S1 |
C21 |
C24 |
C26 |
175.3 |
180.3 |
| S1 |
C21 |
C24 |
H24 |
355.3 |
0.1 |
| C3 |
C2 |
C1 |
C6 |
0.4 |
0.0 |
| C3 |
C2 |
C1 |
H1 |
180.4 |
179.7 |
| N1 |
C4 |
C3 |
C2 |
178.2 |
180.0 |
| H2 |
C2 |
C1 |
C6 |
180.4 |
180.0 |
| H2 |
C2 |
C1 |
H1 |
0.3 |
359.6 |
| F3 |
C11 |
F2 |
C10 |
239.4 |
120.0 |
| F2 |
C11 |
C10 |
C12 |
190.9 |
185.0 |
| N1 |
C4 |
C3 |
C5 |
179.2 |
180.0 |
| C4 |
C3 |
C2 |
H2 |
180.3 |
180.1 |
| C3 |
C4 |
C5 |
C6 |
0.9 |
0.0 |
| C3 |
C4 |
C5 |
H5 |
180.9 |
180.1 |
| H3 |
C3 |
C2 |
H2 |
0.3 |
359.9 |
| H3 |
C3 |
C4 |
C5 |
179.0 |
180.1 |
| F2 |
C11 |
F3 |
C10 |
121.5 |
240.0 |
| F3 |
C11 |
C10 |
C12 |
311.0 |
65.0 |
| C1 |
C6 |
C20 |
N3 |
122.9 |
90.0 |
| HN3 |
N3 |
C20 |
HN3A |
240.0 |
236.0 |
| C20 |
N3 |
HN3 |
HN3A |
120.0 |
124.0 |
| C20 |
N3 |
HN3A |
HN3 |
240.0 |
236.0 |
| C1 |
C6 |
C5 |
C4 |
359.8 |
360.0 |
| N1 |
C4 |
C5 |
C3 |
180.7 |
180.0 |
| C5 |
C4 |
C3 |
H3 |
179.0 |
180.1 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
C20 |
179.9 |
180.3 |
| F4 |
C44 |
C14 |
H14 |
0.6 |
0.2 |
| C5 |
C6 |
C1 |
H1 |
179.6 |
180.3 |
| C1 |
C6 |
C5 |
C20 |
179.9 |
179.7 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.0 |
| C5 |
C6 |
C20 |
H20 |
182.8 |
149.7 |
| C5 |
C6 |
C20 |
H20A |
62.8 |
29.7 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
180.0 |
| H5 |
C5 |
C6 |
C20 |
359.9 |
0.2 |
| F4 |
C44 |
C7 |
N5 |
356.5 |
0.0 |
| C8 |
N5 |
C7 |
HN5 |
180.0 |
180.1 |
| N5 |
C7 |
C22 |
C18 |
183.0 |
180.0 |
| N5 |
C7 |
C22 |
H22 |
3.0 |
360.0 |
| C7 |
N5 |
C8 |
HN5 |
180.0 |
179.9 |
| C8 |
N5 |
C7 |
C22 |
114.6 |
23.8 |
| C7 |
N5 |
HN5 |
C8 |
180.0 |
180.1 |
| HN5 |
N5 |
C7 |
C22 |
294.6 |
203.7 |
| C20 |
C6 |
C1 |
H1 |
359.5 |
0.0 |
| C1 |
C6 |
C20 |
C5 |
180.1 |
180.3 |
| C6 |
C20 |
N3 |
HN3 |
180.0 |
56.1 |
| C6 |
C20 |
N3 |
HN3A |
300.0 |
180.0 |
| C20 |
C6 |
C5 |
H5 |
359.9 |
0.2 |
| H20 |
C20 |
C6 |
H20A |
120.0 |
120.0 |
| F2 |
C11 |
C10 |
N6 |
15.5 |
5.0 |
| F3 |
C11 |
C10 |
N6 |
135.6 |
245.0 |
| F4 |
C44 |
C7 |
C14 |
179.9 |
180.0 |
| C44 |
C7 |
N5 |
HN5 |
116.3 |
23.4 |
| C44 |
C7 |
C22 |
H22 |
181.3 |
180.3 |
| F4 |
C44 |
C7 |
C22 |
178.2 |
179.8 |
| C22 |
C7 |
N5 |
C8 |
114.6 |
23.8 |
| C22 |
C7 |
N5 |
HN5 |
294.6 |
203.7 |
| C7 |
C22 |
C18 |
H18 |
180.1 |
179.8 |
| C13 |
C8 |
N5 |
HN5 |
359.9 |
357.7 |
| H9 |
C9 |
S1 |
C21 |
293.2 |
59.9 |
| H9A |
C9 |
H9 |
H9B |
120.0 |
120.0 |
| H9A |
C9 |
S1 |
C21 |
53.2 |
180.0 |
| H9 |
C9 |
H9A |
H9B |
240.1 |
240.0 |
| H9B |
C9 |
S1 |
C21 |
173.3 |
300.0 |
| H9 |
C9 |
H9B |
H9A |
120.0 |
120.1 |
| F2 |
C11 |
C10 |
F3 |
239.9 |
120.0 |
| C11 |
C10 |
C12 |
C13 |
184.3 |
179.8 |
| C11 |
C10 |
C12 |
H12 |
4.3 |
0.0 |
| C13 |
C12 |
C10 |
H12 |
180.0 |
179.8 |
| C10 |
C12 |
C13 |
H12 |
180.0 |
180.2 |
| C10 |
C12 |
H12 |
C13 |
180.0 |
179.7 |
| F4 |
C44 |
C14 |
C7 |
180.1 |
180.0 |
| C16 |
C14 |
C44 |
H14 |
180.0 |
179.8 |
| F4 |
C44 |
C14 |
C16 |
180.6 |
180.0 |
| C44 |
C14 |
C16 |
H14 |
180.0 |
180.2 |
| C17 |
C16 |
C14 |
C18 |
176.2 |
180.0 |
| C14 |
C16 |
C18 |
H18 |
178.8 |
179.9 |
| H14 |
C14 |
C16 |
C18 |
180.9 |
180.0 |
| H14 |
C14 |
C16 |
C17 |
357.2 |
360.0 |
| S1 |
C21 |
C17 |
C15 |
186.8 |
180.0 |
| C14 |
C16 |
C17 |
C15 |
89.8 |
295.3 |
| C23 |
C15 |
C17 |
H15 |
180.0 |
180.2 |
| C17 |
C15 |
C23 |
H23 |
179.8 |
179.8 |
| C17 |
C15 |
C23 |
H15 |
180.0 |
179.8 |
| C26 |
C23 |
C15 |
H23 |
180.0 |
180.0 |
| C17 |
C15 |
H15 |
C23 |
180.0 |
180.2 |
| H15 |
C15 |
C23 |
H23 |
359.8 |
360.0 |
| C7 |
C22 |
C18 |
C16 |
0.1 |
359.9 |
| C18 |
C16 |
C14 |
H14 |
180.9 |
180.0 |
| C14 |
C16 |
C18 |
C17 |
176.3 |
180.0 |
| C22 |
C18 |
C16 |
H18 |
180.0 |
179.9 |
| S1 |
C21 |
C17 |
C16 |
8.6 |
360.0 |
| C17 |
C16 |
C14 |
H14 |
357.2 |
360.0 |
| C14 |
C16 |
C17 |
C18 |
183.8 |
180.0 |
| C16 |
C17 |
C15 |
C23 |
176.4 |
180.0 |
| C16 |
C17 |
C15 |
H15 |
356.4 |
359.8 |
| C17 |
C16 |
C18 |
H18 |
2.5 |
360.0 |
| S1 |
C21 |
C17 |
C24 |
184.5 |
180.0 |
| C21 |
C17 |
C15 |
C23 |
358.1 |
360.0 |
| C21 |
C17 |
C15 |
H15 |
178.1 |
179.8 |
| C7 |
C22 |
C18 |
H22 |
180.0 |
180.0 |
| C16 |
C18 |
C22 |
H18 |
180.0 |
180.1 |
| H20 |
C20 |
N3 |
HN3 |
300.0 |
176.0 |
| H20 |
C20 |
N3 |
HN3A |
60.0 |
299.9 |
| C6 |
C20 |
H20 |
H20A |
241.5 |
240.0 |
| H20A |
C20 |
N3 |
HN3 |
60.0 |
296.1 |
| H20A |
C20 |
N3 |
HN3A |
180.0 |
60.0 |
| C6 |
C20 |
H20A |
H20 |
118.5 |
120.0 |
| S1 |
C21 |
C24 |
C17 |
175.9 |
180.0 |
| C26 |
C24 |
C21 |
H24 |
180.0 |
180.3 |
| C21 |
C24 |
C26 |
H26 |
178.5 |
180.0 |
| C7 |
C22 |
H22 |
C18 |
180.0 |
180.0 |
| H22 |
C22 |
C18 |
H18 |
0.1 |
359.8 |
| C26 |
C23 |
C15 |
H15 |
179.8 |
179.9 |
| C15 |
C23 |
C26 |
H23 |
180.0 |
180.0 |
| C21 |
C24 |
C26 |
C23 |
358.5 |
359.4 |
| H23 |
C23 |
C15 |
H15 |
359.8 |
360.0 |
| C21 |
C24 |
C26 |
H24 |
180.0 |
179.7 |
| C24 |
C26 |
C23 |
H23 |
182.0 |
180.5 |
| C21 |
C24 |
H24 |
C26 |
180.0 |
180.3 |
| H24 |
C24 |
C26 |
H26 |
358.5 |
0.3 |
| H26 |
C26 |
C23 |
H23 |
1.9 |
359.9 |
| H26 |
C26 |
C24 |
H24 |
358.5 |
0.3 |