PDB Chemical Component M33
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for M33
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N6 |
C6 |
1.331 |
1.383 |
O2A |
PA |
1.481 |
1.480 |
C6 |
C5 |
1.389 |
1.406 |
C6 |
N1 |
1.341 |
1.330 |
N7 |
C5 |
1.331 |
1.354 |
N7 |
C8 |
1.328 |
1.301 |
O1A |
PA |
1.480 |
1.610 |
C5' |
O5' |
1.430 |
1.430 |
C5' |
C4' |
1.531 |
1.530 |
C5 |
C4 |
1.387 |
1.406 |
N1 |
C2 |
1.322 |
1.321 |
O4' |
C4' |
1.438 |
1.445 |
O4' |
C1' |
1.440 |
1.444 |
C8 |
N9 |
1.334 |
1.363 |
PA |
O5' |
1.612 |
1.610 |
PA |
O3A |
1.612 |
1.610 |
C2 |
N3 |
1.322 |
1.317 |
C4 |
N9 |
1.331 |
1.372 |
C4 |
N3 |
1.339 |
1.329 |
C4' |
C3' |
1.528 |
1.545 |
N9 |
C1' |
1.477 |
1.466 |
C1' |
C2' |
1.531 |
1.545 |
O1B |
PB |
1.480 |
1.481 |
O3A |
PB |
1.611 |
1.610 |
C3' |
C2' |
1.527 |
1.545 |
C3' |
O3' |
1.430 |
1.429 |
C2' |
O2' |
1.429 |
1.429 |
O2B |
PB |
1.481 |
1.610 |
PB |
C3B |
1.809 |
1.822 |
O2B |
HO2B |
0.950 |
0.967 |
C3B |
H3B1 |
1.100 |
1.090 |
C3B |
H3B2 |
1.100 |
1.090 |
C3B |
H3B3 |
1.100 |
1.090 |
O1A |
HO1A |
0.950 |
0.967 |
C5' |
H5'1 |
1.100 |
1.090 |
C5' |
H5'2 |
1.100 |
1.090 |
C4' |
H4' |
1.100 |
1.090 |
C3' |
H3' |
1.100 |
1.090 |
O3' |
HO3' |
0.950 |
0.967 |
C2' |
H2' |
1.100 |
1.089 |
O2' |
HO2' |
0.950 |
0.967 |
C1' |
H1' |
1.100 |
1.090 |
C8 |
H8 |
1.080 |
1.080 |
N6 |
HN61 |
1.000 |
0.970 |
N6 |
HN62 |
1.000 |
0.970 |
C2 |
H2 |
1.081 |
1.080 |
Bond Angles for M33
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N6 |
C6 |
N1 |
121.1 |
120.8 |
O2A |
PA |
O5' |
109.2 |
109.5 |
O2A |
PA |
O3A |
107.9 |
109.5 |
C6 |
C5 |
C4 |
118.6 |
118.2 |
C6 |
N1 |
C2 |
121.0 |
121.2 |
N7 |
C5 |
C4 |
107.6 |
107.1 |
N7 |
C8 |
H8 |
125.1 |
125.1 |
O1A |
PA |
O5' |
109.7 |
109.5 |
O1A |
PA |
O3A |
107.9 |
109.5 |
C5' |
C4' |
C3' |
108.7 |
110.4 |
C4' |
C5' |
H5'1 |
108.7 |
109.5 |
C4' |
C5' |
H5'2 |
108.1 |
109.5 |
C5' |
C4' |
H4' |
108.3 |
110.3 |
C5 |
C4 |
N3 |
119.5 |
119.1 |
N1 |
C2 |
N3 |
122.0 |
122.5 |
N1 |
C2 |
H2 |
119.0 |
118.8 |
O4' |
C4' |
C3' |
102.6 |
104.8 |
O4' |
C4' |
H4' |
113.9 |
110.5 |
O4' |
C1' |
C2' |
106.3 |
104.8 |
O4' |
C1' |
H1' |
109.7 |
110.4 |
O3A |
PA |
O5' |
102.5 |
109.5 |
N3 |
C2 |
H2 |
119.0 |
118.8 |
C4' |
C3' |
C2' |
97.5 |
104.1 |
C4' |
C3' |
O3' |
109.7 |
110.5 |
C3' |
C4' |
H4' |
114.1 |
110.3 |
C4' |
C3' |
H3' |
116.7 |
110.5 |
N9 |
C1' |
H1' |
107.3 |
110.4 |
C1' |
C2' |
H2' |
115.3 |
110.6 |
O1B |
PB |
C3B |
117.6 |
109.5 |
O3' |
C3' |
C2' |
109.2 |
110.5 |
C3' |
C2' |
O2' |
109.9 |
110.5 |
C2' |
C3' |
H3' |
117.1 |
110.5 |
C3' |
C2' |
H2' |
115.2 |
110.5 |
O3' |
C3' |
H3' |
106.4 |
110.5 |
C3' |
O3' |
HO3' |
109.5 |
114.0 |
O2' |
C2' |
H2' |
106.4 |
110.5 |
C2' |
O2' |
HO2' |
109.5 |
114.0 |
O2B |
PB |
C3B |
114.0 |
109.5 |
PB |
C3B |
H3B1 |
109.5 |
109.5 |
PB |
C3B |
H3B2 |
109.4 |
109.5 |
PB |
C3B |
H3B3 |
109.4 |
109.5 |
H3B1 |
C3B |
H3B2 |
109.5 |
109.5 |
H3B1 |
C3B |
H3B3 |
109.5 |
109.5 |
H3B2 |
C3B |
H3B3 |
109.5 |
109.5 |
H5'1 |
C5' |
H5'2 |
111.3 |
109.5 |
HN61 |
N6 |
HN62 |
109.4 |
120.0 |
Torsion Angles for M33
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
N6 |
C6 |
C5 |
C4 |
183.2 |
180.2 |
N6 |
C6 |
N1 |
C2 |
177.0 |
180.0 |
O1A |
PA |
O2A |
O5' |
126.6 |
120.0 |
O1A |
PA |
O2A |
O3A |
237.2 |
240.0 |
O3A |
PA |
O2A |
O5' |
249.4 |
240.0 |
N7 |
C5 |
C6 |
C4 |
179.2 |
179.8 |
C6 |
C5 |
C4 |
N3 |
359.7 |
359.5 |
N1 |
C6 |
C5 |
C4 |
0.5 |
0.3 |
C6 |
N1 |
C2 |
N3 |
359.9 |
0.1 |
C6 |
N1 |
C2 |
H2 |
179.9 |
180.1 |
C6 |
C5 |
N7 |
C4 |
180.8 |
180.2 |
C5 |
N7 |
C8 |
H8 |
180.1 |
180.0 |
N7 |
C5 |
C4 |
N3 |
180.3 |
179.6 |
O2A |
PA |
O1A |
O5' |
233.7 |
240.0 |
O2A |
PA |
O1A |
O3A |
122.8 |
120.0 |
O3A |
PA |
O1A |
O5' |
110.9 |
120.0 |
O4' |
C4' |
C5' |
C3' |
248.9 |
244.6 |
O4' |
C4' |
C5' |
H4' |
124.4 |
122.4 |
C5' |
C4' |
C3' |
C2' |
294.0 |
217.2 |
C5' |
C4' |
C3' |
O3' |
180.5 |
98.5 |
C3' |
C4' |
C5' |
H4' |
235.5 |
237.8 |
C5' |
C4' |
C3' |
H3' |
59.5 |
335.9 |
H5'1 |
C5' |
C4' |
H5'2 |
121.0 |
120.0 |
N3 |
C2 |
N1 |
H2 |
180.0 |
180.0 |
C5' |
C4' |
O4' |
C3' |
115.1 |
118.8 |
O4' |
C4' |
C5' |
H5'1 |
67.6 |
309.6 |
O4' |
C4' |
C5' |
H5'2 |
306.7 |
189.6 |
C5' |
C4' |
O4' |
H4' |
238.9 |
237.7 |
O4' |
C4' |
C3' |
C2' |
49.3 |
336.0 |
O4' |
C4' |
C3' |
O3' |
295.8 |
217.4 |
C3' |
C4' |
O4' |
H4' |
123.8 |
118.8 |
O4' |
C4' |
C3' |
H3' |
174.8 |
94.7 |
C1' |
O4' |
C4' |
C3' |
327.0 |
40.5 |
C1' |
O4' |
C4' |
H4' |
203.2 |
281.7 |
N9 |
C1' |
O4' |
H1' |
119.1 |
122.3 |
O4' |
C1' |
C2' |
H2' |
263.9 |
265.3 |
C8 |
N9 |
C1' |
H1' |
194.0 |
145.9 |
O2A |
PA |
O5' |
O3A |
245.8 |
240.0 |
O1A |
PA |
O5' |
O3A |
114.4 |
120.0 |
O2A |
PA |
O3A |
O5' |
115.1 |
120.0 |
O1A |
PA |
O3A |
O5' |
244.2 |
240.0 |
C5 |
C4 |
N3 |
C2 |
360.0 |
0.6 |
N1 |
C2 |
N3 |
H2 |
180.0 |
180.0 |
C4 |
N9 |
C1' |
H1' |
11.4 |
325.6 |
C4 |
N3 |
C2 |
H2 |
180.2 |
179.7 |
C3' |
C4' |
C5' |
H5'1 |
178.7 |
65.0 |
C3' |
C4' |
C5' |
H5'2 |
57.8 |
305.0 |
C5' |
C4' |
C3' |
H4' |
121.0 |
122.2 |
O4' |
C4' |
C3' |
H4' |
236.3 |
241.1 |
O3' |
C3' |
C4' |
C2' |
246.5 |
241.3 |
C4' |
C3' |
C2' |
O2' |
198.7 |
241.4 |
C2' |
C3' |
C4' |
H3' |
234.5 |
241.3 |
C4' |
C3' |
C2' |
H2' |
78.5 |
118.8 |
O3' |
C3' |
C4' |
H3' |
121.0 |
122.7 |
C4' |
C3' |
O3' |
HO3' |
4.2 |
180.0 |
O4' |
C1' |
N9 |
H1' |
239.6 |
237.7 |
N9 |
C1' |
C2' |
H2' |
24.6 |
24.1 |
O4' |
C1' |
C2' |
H1' |
120.3 |
118.9 |
C1' |
C2' |
C3' |
H3' |
189.0 |
241.3 |
C3' |
C2' |
C1' |
H2' |
124.3 |
118.7 |
O2' |
C2' |
C1' |
H2' |
239.9 |
237.3 |
C1' |
C2' |
O2' |
HO2' |
51.0 |
183.9 |
O2B |
PB |
O1B |
C3B |
158.3 |
120.0 |
O1B |
PB |
C3B |
H3B1 |
266.5 |
60.0 |
O1B |
PB |
C3B |
H3B2 |
26.6 |
180.0 |
O1B |
PB |
C3B |
H3B3 |
146.6 |
300.0 |
O3A |
PB |
C3B |
H3B1 |
6.1 |
180.0 |
O3A |
PB |
C3B |
H3B2 |
126.1 |
300.0 |
O3A |
PB |
C3B |
H3B3 |
246.1 |
60.0 |
O4' |
C1' |
C2' |
C3' |
28.2 |
24.0 |
C4' |
C3' |
C2' |
O3' |
246.1 |
241.3 |
C2' |
C3' |
C4' |
H4' |
173.0 |
95.0 |
C4' |
C3' |
C2' |
H3' |
125.2 |
118.7 |
C1' |
C2' |
C3' |
H2' |
235.7 |
241.2 |
O3' |
C3' |
C2' |
H3' |
239.1 |
237.3 |
C2' |
C3' |
O3' |
HO3' |
258.5 |
65.4 |
O2' |
C2' |
C3' |
H2' |
120.1 |
122.6 |
C3' |
C2' |
O2' |
HO2' |
160.3 |
298.5 |
C4' |
C3' |
O3' |
C2' |
105.7 |
114.7 |
O3' |
C3' |
C4' |
H4' |
59.5 |
336.3 |
C4' |
C3' |
O3' |
H3' |
232.9 |
237.4 |
O3' |
C3' |
C2' |
O2' |
312.5 |
0.0 |
C2' |
C3' |
O3' |
H3' |
127.3 |
122.7 |
O3' |
C3' |
C2' |
H2' |
192.4 |
237.4 |
O4' |
C1' |
C2' |
O2' |
143.8 |
142.6 |
C1' |
C2' |
O2' |
H2' |
125.4 |
122.8 |
O2' |
C2' |
C3' |
H3' |
73.4 |
122.7 |
C3' |
C2' |
O2' |
H2' |
234.6 |
237.4 |
O1B |
PB |
O2B |
C3B |
201.0 |
240.0 |
O2B |
PB |
C3B |
H3B1 |
105.8 |
300.0 |
O2B |
PB |
C3B |
H3B2 |
225.9 |
60.0 |
O2B |
PB |
C3B |
H3B3 |
345.9 |
180.0 |
H3B1 |
C3B |
PB |
H3B2 |
240.0 |
240.0 |
H3B1 |
C3B |
PB |
H3B3 |
120.0 |
120.0 |
H3B2 |
C3B |
PB |
H3B3 |
240.0 |
240.0 |
HO2B |
O2B |
PB |
C3B |
196.3 |
300.0 |
PB |
C3B |
H3B1 |
H3B2 |
120.0 |
120.0 |
PB |
C3B |
H3B1 |
H3B3 |
240.0 |
240.0 |
H3B2 |
C3B |
H3B1 |
H3B3 |
120.0 |
120.0 |
PB |
C3B |
H3B2 |
H3B1 |
240.0 |
240.0 |
PB |
C3B |
H3B2 |
H3B3 |
120.0 |
120.0 |
H3B1 |
C3B |
H3B2 |
H3B3 |
240.0 |
240.0 |
PB |
C3B |
H3B3 |
H3B1 |
120.0 |
120.0 |
PB |
C3B |
H3B3 |
H3B2 |
240.0 |
240.0 |
H3B1 |
C3B |
H3B3 |
H3B2 |
120.0 |
120.0 |
HO1A |
O1A |
PA |
O5' |
91.3 |
300.0 |
HO1A |
O1A |
PA |
O3A |
202.2 |
60.0 |
H5'1 |
C5' |
C4' |
C3' |
178.7 |
65.0 |
C4' |
C5' |
H5'1 |
H5'2 |
241.0 |
240.0 |
H5'1 |
C5' |
C4' |
H4' |
303.2 |
187.2 |
H5'2 |
C5' |
C4' |
C3' |
57.8 |
305.0 |
C4' |
C5' |
H5'2 |
H5'1 |
119.3 |
120.0 |
H5'2 |
C5' |
C4' |
H4' |
182.3 |
67.2 |
C5' |
C4' |
H4' |
C3' |
238.8 |
237.8 |
H4' |
C4' |
C5' |
H5'1 |
303.2 |
187.2 |
H4' |
C4' |
C5' |
H5'2 |
182.3 |
67.2 |
O4' |
C4' |
H4' |
C3' |
117.4 |
115.4 |
H4' |
C4' |
C3' |
C2' |
173.0 |
95.0 |
H4' |
C4' |
C3' |
O3' |
59.5 |
336.3 |
H4' |
C4' |
C3' |
H3' |
298.5 |
213.6 |
C4' |
C3' |
H3' |
C2' |
245.1 |
245.3 |
C4' |
C3' |
H3' |
O3' |
122.7 |
122.6 |
H3' |
C3' |
C4' |
H4' |
298.5 |
213.6 |
O3' |
C3' |
H3' |
C2' |
122.4 |
122.7 |
H3' |
C3' |
C2' |
O2' |
73.4 |
122.7 |
H3' |
C3' |
C2' |
H2' |
313.3 |
0.1 |
H3' |
C3' |
O3' |
HO3' |
131.2 |
302.7 |
HO3' |
O3' |
C3' |
C2' |
258.5 |
65.4 |
HO3' |
O3' |
C3' |
H3' |
131.2 |
302.7 |
C3' |
C2' |
H2' |
O2' |
122.1 |
122.6 |
H2' |
C2' |
C3' |
H3' |
313.3 |
0.1 |
H2' |
C2' |
O2' |
HO2' |
285.6 |
61.1 |
HO2' |
O2' |
C2' |
H2' |
285.6 |
61.1 |
O4' |
C1' |
H1' |
C2' |
241.6 |
244.6 |
H1' |
C1' |
C2' |
H2' |
143.6 |
146.4 |
HN61 |
N6 |
C6 |
N1 |
256.0 |
180.0 |
HN62 |
N6 |
C6 |
N1 |
16.0 |
359.9 |
N1 |
C2 |
H2 |
N3 |
180.0 |
180.0 |