PDB Chemical Component M33

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for M33

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N6 C6 1.331 1.383
O2A PA 1.481 1.480
C6 C5 1.389 1.406
C6 N1 1.341 1.330
N7 C5 1.331 1.354
N7 C8 1.328 1.301
O1A PA 1.480 1.610
C5' O5' 1.430 1.430
C5' C4' 1.531 1.530
C5 C4 1.387 1.406
N1 C2 1.322 1.321
O4' C4' 1.438 1.445
O4' C1' 1.440 1.444
C8 N9 1.334 1.363
PA O5' 1.612 1.610
PA O3A 1.612 1.610
C2 N3 1.322 1.317
C4 N9 1.331 1.372
C4 N3 1.339 1.329
C4' C3' 1.528 1.545
N9 C1' 1.477 1.466
C1' C2' 1.531 1.545
O1B PB 1.480 1.481
O3A PB 1.611 1.610
C3' C2' 1.527 1.545
C3' O3' 1.430 1.429
C2' O2' 1.429 1.429
O2B PB 1.481 1.610
PB C3B 1.809 1.822
O2B HO2B 0.950 0.967
C3B H3B1 1.100 1.090
C3B H3B2 1.100 1.090
C3B H3B3 1.100 1.090
O1A HO1A 0.950 0.967
C5' H5'1 1.100 1.090
C5' H5'2 1.100 1.090
C4' H4' 1.100 1.090
C3' H3' 1.100 1.090
O3' HO3' 0.950 0.967
C2' H2' 1.100 1.089
O2' HO2' 0.950 0.967
C1' H1' 1.100 1.090
C8 H8 1.080 1.080
N6 HN61 1.000 0.970
N6 HN62 1.000 0.970
C2 H2 1.081 1.080

Bond Angles for M33

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N6 C6 N1 121.1 120.8
O2A PA O5' 109.2 109.5
O2A PA O3A 107.9 109.5
C6 C5 C4 118.6 118.2
C6 N1 C2 121.0 121.2
N7 C5 C4 107.6 107.1
N7 C8 H8 125.1 125.1
O1A PA O5' 109.7 109.5
O1A PA O3A 107.9 109.5
C5' C4' C3' 108.7 110.4
C4' C5' H5'1 108.7 109.5
C4' C5' H5'2 108.1 109.5
C5' C4' H4' 108.3 110.3
C5 C4 N3 119.5 119.1
N1 C2 N3 122.0 122.5
N1 C2 H2 119.0 118.8
O4' C4' C3' 102.6 104.8
O4' C4' H4' 113.9 110.5
O4' C1' C2' 106.3 104.8
O4' C1' H1' 109.7 110.4
O3A PA O5' 102.5 109.5
N3 C2 H2 119.0 118.8
C4' C3' C2' 97.5 104.1
C4' C3' O3' 109.7 110.5
C3' C4' H4' 114.1 110.3
C4' C3' H3' 116.7 110.5
N9 C1' H1' 107.3 110.4
C1' C2' H2' 115.3 110.6
O1B PB C3B 117.6 109.5
O3' C3' C2' 109.2 110.5
C3' C2' O2' 109.9 110.5
C2' C3' H3' 117.1 110.5
C3' C2' H2' 115.2 110.5
O3' C3' H3' 106.4 110.5
C3' O3' HO3' 109.5 114.0
O2' C2' H2' 106.4 110.5
C2' O2' HO2' 109.5 114.0
O2B PB C3B 114.0 109.5
PB C3B H3B1 109.5 109.5
PB C3B H3B2 109.4 109.5
PB C3B H3B3 109.4 109.5
H3B1 C3B H3B2 109.5 109.5
H3B1 C3B H3B3 109.5 109.5
H3B2 C3B H3B3 109.5 109.5
H5'1 C5' H5'2 111.3 109.5
HN61 N6 HN62 109.4 120.0

Torsion Angles for M33

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N6 C6 C5 C4 183.2 180.2
N6 C6 N1 C2 177.0 180.0
O1A PA O2A O5' 126.6 120.0
O1A PA O2A O3A 237.2 240.0
O3A PA O2A O5' 249.4 240.0
N7 C5 C6 C4 179.2 179.8
C6 C5 C4 N3 359.7 359.5
N1 C6 C5 C4 0.5 0.3
C6 N1 C2 N3 359.9 0.1
C6 N1 C2 H2 179.9 180.1
C6 C5 N7 C4 180.8 180.2
C5 N7 C8 H8 180.1 180.0
N7 C5 C4 N3 180.3 179.6
O2A PA O1A O5' 233.7 240.0
O2A PA O1A O3A 122.8 120.0
O3A PA O1A O5' 110.9 120.0
O4' C4' C5' C3' 248.9 244.6
O4' C4' C5' H4' 124.4 122.4
C5' C4' C3' C2' 294.0 217.2
C5' C4' C3' O3' 180.5 98.5
C3' C4' C5' H4' 235.5 237.8
C5' C4' C3' H3' 59.5 335.9
H5'1 C5' C4' H5'2 121.0 120.0
N3 C2 N1 H2 180.0 180.0
C5' C4' O4' C3' 115.1 118.8
O4' C4' C5' H5'1 67.6 309.6
O4' C4' C5' H5'2 306.7 189.6
C5' C4' O4' H4' 238.9 237.7
O4' C4' C3' C2' 49.3 336.0
O4' C4' C3' O3' 295.8 217.4
C3' C4' O4' H4' 123.8 118.8
O4' C4' C3' H3' 174.8 94.7
C1' O4' C4' C3' 327.0 40.5
C1' O4' C4' H4' 203.2 281.7
N9 C1' O4' H1' 119.1 122.3
O4' C1' C2' H2' 263.9 265.3
C8 N9 C1' H1' 194.0 145.9
O2A PA O5' O3A 245.8 240.0
O1A PA O5' O3A 114.4 120.0
O2A PA O3A O5' 115.1 120.0
O1A PA O3A O5' 244.2 240.0
C5 C4 N3 C2 360.0 0.6
N1 C2 N3 H2 180.0 180.0
C4 N9 C1' H1' 11.4 325.6
C4 N3 C2 H2 180.2 179.7
C3' C4' C5' H5'1 178.7 65.0
C3' C4' C5' H5'2 57.8 305.0
C5' C4' C3' H4' 121.0 122.2
O4' C4' C3' H4' 236.3 241.1
O3' C3' C4' C2' 246.5 241.3
C4' C3' C2' O2' 198.7 241.4
C2' C3' C4' H3' 234.5 241.3
C4' C3' C2' H2' 78.5 118.8
O3' C3' C4' H3' 121.0 122.7
C4' C3' O3' HO3' 4.2 180.0
O4' C1' N9 H1' 239.6 237.7
N9 C1' C2' H2' 24.6 24.1
O4' C1' C2' H1' 120.3 118.9
C1' C2' C3' H3' 189.0 241.3
C3' C2' C1' H2' 124.3 118.7
O2' C2' C1' H2' 239.9 237.3
C1' C2' O2' HO2' 51.0 183.9
O2B PB O1B C3B 158.3 120.0
O1B PB C3B H3B1 266.5 60.0
O1B PB C3B H3B2 26.6 180.0
O1B PB C3B H3B3 146.6 300.0
O3A PB C3B H3B1 6.1 180.0
O3A PB C3B H3B2 126.1 300.0
O3A PB C3B H3B3 246.1 60.0
O4' C1' C2' C3' 28.2 24.0
C4' C3' C2' O3' 246.1 241.3
C2' C3' C4' H4' 173.0 95.0
C4' C3' C2' H3' 125.2 118.7
C1' C2' C3' H2' 235.7 241.2
O3' C3' C2' H3' 239.1 237.3
C2' C3' O3' HO3' 258.5 65.4
O2' C2' C3' H2' 120.1 122.6
C3' C2' O2' HO2' 160.3 298.5
C4' C3' O3' C2' 105.7 114.7
O3' C3' C4' H4' 59.5 336.3
C4' C3' O3' H3' 232.9 237.4
O3' C3' C2' O2' 312.5 0.0
C2' C3' O3' H3' 127.3 122.7
O3' C3' C2' H2' 192.4 237.4
O4' C1' C2' O2' 143.8 142.6
C1' C2' O2' H2' 125.4 122.8
O2' C2' C3' H3' 73.4 122.7
C3' C2' O2' H2' 234.6 237.4
O1B PB O2B C3B 201.0 240.0
O2B PB C3B H3B1 105.8 300.0
O2B PB C3B H3B2 225.9 60.0
O2B PB C3B H3B3 345.9 180.0
H3B1 C3B PB H3B2 240.0 240.0
H3B1 C3B PB H3B3 120.0 120.0
H3B2 C3B PB H3B3 240.0 240.0
HO2B O2B PB C3B 196.3 300.0
PB C3B H3B1 H3B2 120.0 120.0
PB C3B H3B1 H3B3 240.0 240.0
H3B2 C3B H3B1 H3B3 120.0 120.0
PB C3B H3B2 H3B1 240.0 240.0
PB C3B H3B2 H3B3 120.0 120.0
H3B1 C3B H3B2 H3B3 240.0 240.0
PB C3B H3B3 H3B1 120.0 120.0
PB C3B H3B3 H3B2 240.0 240.0
H3B1 C3B H3B3 H3B2 120.0 120.0
HO1A O1A PA O5' 91.3 300.0
HO1A O1A PA O3A 202.2 60.0
H5'1 C5' C4' C3' 178.7 65.0
C4' C5' H5'1 H5'2 241.0 240.0
H5'1 C5' C4' H4' 303.2 187.2
H5'2 C5' C4' C3' 57.8 305.0
C4' C5' H5'2 H5'1 119.3 120.0
H5'2 C5' C4' H4' 182.3 67.2
C5' C4' H4' C3' 238.8 237.8
H4' C4' C5' H5'1 303.2 187.2
H4' C4' C5' H5'2 182.3 67.2
O4' C4' H4' C3' 117.4 115.4
H4' C4' C3' C2' 173.0 95.0
H4' C4' C3' O3' 59.5 336.3
H4' C4' C3' H3' 298.5 213.6
C4' C3' H3' C2' 245.1 245.3
C4' C3' H3' O3' 122.7 122.6
H3' C3' C4' H4' 298.5 213.6
O3' C3' H3' C2' 122.4 122.7
H3' C3' C2' O2' 73.4 122.7
H3' C3' C2' H2' 313.3 0.1
H3' C3' O3' HO3' 131.2 302.7
HO3' O3' C3' C2' 258.5 65.4
HO3' O3' C3' H3' 131.2 302.7
C3' C2' H2' O2' 122.1 122.6
H2' C2' C3' H3' 313.3 0.1
H2' C2' O2' HO2' 285.6 61.1
HO2' O2' C2' H2' 285.6 61.1
O4' C1' H1' C2' 241.6 244.6
H1' C1' C2' H2' 143.6 146.4
HN61 N6 C6 N1 256.0 180.0
HN62 N6 C6 N1 16.0 359.9
N1 C2 H2 N3 180.0 180.0