PDB Chemical Component M2S
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for M2S
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.457 |
1.469 |
| CA |
CB |
1.565 |
1.529 |
| CA |
C |
1.537 |
1.508 |
| CB |
CG1 |
1.538 |
1.530 |
| CB |
CG2 |
1.546 |
1.530 |
| CB |
CG |
1.553 |
1.530 |
| CG |
SD |
1.837 |
1.814 |
| SD |
OE |
1.620 |
1.421 |
| SD |
CE |
1.811 |
1.814 |
| C |
O |
1.232 |
1.208 |
| C |
OXT |
1.334 |
1.342 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.010 |
| CA |
HA |
1.100 |
1.090 |
| CG1 |
HG11 |
1.100 |
1.091 |
| CG1 |
HG12 |
1.100 |
1.089 |
| CG1 |
HG13 |
1.100 |
1.090 |
| CG2 |
HG21 |
1.100 |
1.091 |
| CG2 |
HG22 |
1.100 |
1.090 |
| CG2 |
HG23 |
1.100 |
1.090 |
| CG |
HG2 |
1.100 |
1.091 |
| CG |
HG3 |
1.100 |
1.090 |
| CE |
HE1 |
1.100 |
1.090 |
| CE |
HE2 |
1.100 |
1.090 |
| CE |
HE3 |
1.100 |
1.089 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for M2S
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
CA |
CB |
112.3 |
109.5 |
| N |
CA |
C |
106.3 |
109.4 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.4 |
111.0 |
| N |
CA |
HA |
113.3 |
109.5 |
| CB |
CA |
C |
118.1 |
109.5 |
| CA |
CB |
CG1 |
108.7 |
109.5 |
| CA |
CB |
CG2 |
106.7 |
109.5 |
| CA |
CB |
CG |
114.4 |
109.5 |
| CB |
CA |
HA |
100.0 |
109.5 |
| CA |
C |
O |
122.0 |
120.0 |
| CA |
C |
OXT |
116.7 |
120.0 |
| C |
CA |
HA |
106.8 |
109.5 |
| CG1 |
CB |
CG2 |
106.5 |
109.5 |
| CG1 |
CB |
CG |
109.9 |
109.5 |
| CB |
CG1 |
HG11 |
109.5 |
109.4 |
| CB |
CG1 |
HG12 |
109.5 |
109.5 |
| CB |
CG1 |
HG13 |
109.4 |
109.5 |
| CG2 |
CB |
CG |
110.3 |
109.5 |
| CB |
CG2 |
HG21 |
109.5 |
109.5 |
| CB |
CG2 |
HG22 |
109.5 |
109.5 |
| CB |
CG2 |
HG23 |
109.5 |
109.5 |
| CB |
CG |
SD |
119.3 |
109.5 |
| CB |
CG |
HG2 |
106.3 |
109.5 |
| CB |
CG |
HG3 |
104.0 |
109.5 |
| CG |
SD |
OE |
103.4 |
109.4 |
| CG |
SD |
CE |
104.4 |
103.0 |
| SD |
CG |
HG2 |
106.3 |
109.5 |
| SD |
CG |
HG3 |
104.0 |
109.5 |
| OE |
SD |
CE |
96.3 |
109.5 |
| SD |
CE |
HE1 |
109.5 |
109.5 |
| SD |
CE |
HE2 |
109.5 |
109.4 |
| SD |
CE |
HE3 |
109.5 |
109.5 |
| O |
C |
OXT |
121.4 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| H |
N |
H2 |
109.5 |
111.0 |
| HG11 |
CG1 |
HG12 |
109.4 |
109.5 |
| HG11 |
CG1 |
HG13 |
109.5 |
109.5 |
| HG12 |
CG1 |
HG13 |
109.5 |
109.5 |
| HG21 |
CG2 |
HG22 |
109.5 |
109.5 |
| HG21 |
CG2 |
HG23 |
109.4 |
109.5 |
| HG22 |
CG2 |
HG23 |
109.5 |
109.5 |
| HG2 |
CG |
HG3 |
117.6 |
109.4 |
| HE1 |
CE |
HE2 |
109.5 |
109.4 |
| HE1 |
CE |
HE3 |
109.4 |
109.6 |
| HE2 |
CE |
HE3 |
109.5 |
109.5 |
Torsion Angles for M2S
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CB |
CA |
N |
C |
229.4 |
240.0 |
| N |
CA |
CB |
CG1 |
188.7 |
60.0 |
| N |
CA |
CB |
CG2 |
303.2 |
180.0 |
| N |
CA |
CB |
CG |
65.5 |
300.0 |
| CB |
CA |
N |
HA |
112.4 |
120.0 |
| N |
CA |
C |
O |
274.1 |
340.0 |
| N |
CA |
C |
OXT |
95.9 |
160.0 |
| C |
CA |
N |
HA |
243.0 |
240.0 |
| H |
N |
CA |
H2 |
240.0 |
236.1 |
| N |
CA |
CB |
C |
124.3 |
120.0 |
| CB |
CA |
N |
H |
197.8 |
300.1 |
| CB |
CA |
N |
H2 |
317.7 |
64.0 |
| N |
CA |
CB |
HA |
239.6 |
240.0 |
| CB |
CA |
C |
O |
41.3 |
100.0 |
| CB |
CA |
C |
OXT |
223.1 |
280.0 |
| C |
CA |
CB |
HA |
115.3 |
120.0 |
| CG1 |
CB |
CA |
CG2 |
245.5 |
240.0 |
| CG1 |
CB |
CA |
CG |
123.2 |
120.0 |
| CA |
CB |
CG1 |
HG11 |
159.7 |
60.0 |
| CA |
CB |
CG1 |
HG12 |
279.7 |
180.0 |
| CA |
CB |
CG1 |
HG13 |
39.7 |
300.0 |
| CG2 |
CB |
CA |
CG |
237.7 |
240.0 |
| CA |
CB |
CG2 |
HG21 |
14.0 |
60.0 |
| CA |
CB |
CG2 |
HG22 |
134.0 |
179.9 |
| CA |
CB |
CG2 |
HG23 |
254.0 |
300.0 |
| CA |
CB |
CG |
SD |
197.4 |
180.0 |
| CA |
CB |
CG |
HG2 |
317.3 |
300.0 |
| CA |
CB |
CG |
HG3 |
82.1 |
60.0 |
| N |
CA |
C |
CB |
232.8 |
240.0 |
| C |
CA |
N |
H |
328.3 |
60.1 |
| C |
CA |
N |
H2 |
88.3 |
184.0 |
| N |
CA |
C |
HA |
121.3 |
120.0 |
| C |
CA |
CB |
CG1 |
64.4 |
300.0 |
| C |
CA |
CB |
CG2 |
178.9 |
60.0 |
| C |
CA |
CB |
CG |
301.2 |
180.0 |
| CB |
CA |
C |
HA |
248.5 |
240.0 |
| O |
C |
CA |
OXT |
178.2 |
180.0 |
| CA |
C |
OXT |
HXT |
178.2 |
180.0 |
| CG1 |
CB |
CA |
C |
64.4 |
300.0 |
| CA |
CB |
CG1 |
CG2 |
114.7 |
120.0 |
| CA |
CB |
CG1 |
CG |
234.2 |
240.0 |
| CG1 |
CB |
CA |
HA |
309.1 |
180.0 |
| CG2 |
CB |
CG1 |
CG |
119.5 |
120.0 |
| CG1 |
CB |
CG2 |
HG21 |
130.0 |
180.0 |
| CG1 |
CB |
CG2 |
HG22 |
250.0 |
300.0 |
| CG1 |
CB |
CG2 |
HG23 |
10.0 |
60.0 |
| CG1 |
CB |
CG |
SD |
74.8 |
60.0 |
| CG1 |
CB |
CG |
HG2 |
194.8 |
180.0 |
| CG1 |
CB |
CG |
HG3 |
319.6 |
299.9 |
| HG11 |
CG1 |
CB |
HG12 |
240.0 |
240.0 |
| HG11 |
CG1 |
CB |
HG13 |
120.0 |
120.0 |
| HG12 |
CG1 |
CB |
HG13 |
240.0 |
240.0 |
| CG2 |
CB |
CA |
C |
178.9 |
60.0 |
| CA |
CB |
CG2 |
CG1 |
244.0 |
240.0 |
| CA |
CB |
CG2 |
CG |
124.8 |
120.0 |
| CG2 |
CB |
CA |
HA |
63.6 |
300.0 |
| CG1 |
CB |
CG2 |
CG |
240.8 |
240.0 |
| CG2 |
CB |
CG1 |
HG11 |
45.0 |
300.0 |
| CG2 |
CB |
CG1 |
HG12 |
165.0 |
60.0 |
| CG2 |
CB |
CG1 |
HG13 |
285.0 |
180.0 |
| CG2 |
CB |
CG |
SD |
317.7 |
300.0 |
| CG2 |
CB |
CG |
HG2 |
77.7 |
60.0 |
| CG2 |
CB |
CG |
HG3 |
202.4 |
180.0 |
| HG21 |
CG2 |
CB |
HG22 |
240.0 |
240.0 |
| HG21 |
CG2 |
CB |
HG23 |
120.0 |
120.0 |
| HG22 |
CG2 |
CB |
HG23 |
240.0 |
240.0 |
| CG |
CB |
CA |
C |
301.2 |
180.0 |
| CA |
CB |
CG |
CG1 |
122.5 |
120.0 |
| CA |
CB |
CG |
CG2 |
239.7 |
240.0 |
| CG |
CB |
CA |
HA |
185.9 |
60.0 |
| CG1 |
CB |
CG |
CG2 |
117.1 |
120.0 |
| CG |
CB |
CG1 |
HG11 |
285.5 |
180.0 |
| CG |
CB |
CG1 |
HG12 |
45.5 |
300.0 |
| CG |
CB |
CG1 |
HG13 |
165.5 |
60.0 |
| CG |
CB |
CG2 |
HG21 |
249.2 |
300.0 |
| CG |
CB |
CG2 |
HG22 |
9.2 |
60.0 |
| CG |
CB |
CG2 |
HG23 |
129.2 |
180.0 |
| CB |
CG |
SD |
OE |
268.5 |
296.4 |
| CB |
CG |
SD |
CE |
168.2 |
180.0 |
| SD |
CG |
CB |
HG2 |
240.0 |
240.0 |
| SD |
CG |
CB |
HG3 |
115.2 |
120.0 |
| HG2 |
CG |
CB |
HG3 |
235.2 |
240.0 |
| CB |
CG |
SD |
HG2 |
120.0 |
120.0 |
| CB |
CG |
SD |
HG3 |
244.8 |
240.0 |
| OE |
SD |
CG |
CE |
100.3 |
116.4 |
| CG |
SD |
CE |
HE1 |
351.5 |
60.0 |
| CG |
SD |
CE |
HE2 |
111.5 |
180.0 |
| CG |
SD |
CE |
HE3 |
231.5 |
300.0 |
| HG2 |
CG |
SD |
HG3 |
124.8 |
119.9 |
| CG |
SD |
OE |
CE |
253.5 |
247.8 |
| OE |
SD |
CG |
HG2 |
148.5 |
176.4 |
| OE |
SD |
CG |
HG3 |
23.7 |
56.4 |
| OE |
SD |
CE |
HE1 |
245.9 |
303.7 |
| OE |
SD |
CE |
HE2 |
5.9 |
63.6 |
| OE |
SD |
CE |
HE3 |
125.9 |
183.6 |
| CG |
SD |
CE |
OE |
105.6 |
116.3 |
| CE |
SD |
CG |
HG2 |
48.2 |
60.0 |
| CE |
SD |
CG |
HG3 |
283.4 |
300.0 |
| HE1 |
CE |
SD |
HE2 |
240.0 |
240.1 |
| HE1 |
CE |
SD |
HE3 |
120.0 |
120.1 |
| HE2 |
CE |
SD |
HE3 |
240.0 |
240.0 |
| CA |
C |
O |
OXT |
181.9 |
180.0 |
| O |
C |
CA |
HA |
152.8 |
220.0 |
| O |
C |
OXT |
HXT |
360.0 |
0.0 |
| CA |
C |
OXT |
O |
178.2 |
180.0 |
| OXT |
C |
CA |
HA |
334.6 |
40.0 |
| H |
N |
CA |
CB |
197.8 |
300.1 |
| H |
N |
CA |
C |
328.3 |
60.1 |
| CA |
N |
H |
H2 |
120.0 |
123.9 |
| H |
N |
CA |
HA |
85.4 |
180.0 |
| H2 |
N |
CA |
CB |
317.7 |
64.0 |
| H2 |
N |
CA |
C |
88.3 |
184.0 |
| CA |
N |
H2 |
H |
240.0 |
236.0 |
| H2 |
N |
CA |
HA |
205.4 |
304.0 |
| N |
CA |
HA |
CB |
119.7 |
120.0 |
| N |
CA |
HA |
C |
243.3 |
240.1 |
| HA |
CA |
N |
H |
85.4 |
180.0 |
| HA |
CA |
N |
H2 |
205.4 |
304.0 |
| CB |
CA |
HA |
C |
123.6 |
120.0 |
| HA |
CA |
CB |
CG1 |
309.1 |
180.0 |
| HA |
CA |
CB |
CG2 |
63.6 |
300.0 |
| HA |
CA |
CB |
CG |
185.9 |
60.0 |
| HA |
CA |
C |
O |
152.8 |
220.0 |
| HA |
CA |
C |
OXT |
334.6 |
40.0 |
| HG11 |
CG1 |
CB |
CG2 |
45.0 |
300.0 |
| HG11 |
CG1 |
CB |
CG |
285.5 |
180.0 |
| CB |
CG1 |
HG11 |
HG12 |
120.0 |
120.0 |
| CB |
CG1 |
HG11 |
HG13 |
240.0 |
240.0 |
| HG12 |
CG1 |
HG11 |
HG13 |
120.0 |
120.0 |
| HG12 |
CG1 |
CB |
CG2 |
165.0 |
60.0 |
| HG12 |
CG1 |
CB |
CG |
45.5 |
300.0 |
| CB |
CG1 |
HG12 |
HG11 |
240.0 |
240.0 |
| CB |
CG1 |
HG12 |
HG13 |
120.0 |
120.0 |
| HG11 |
CG1 |
HG12 |
HG13 |
240.0 |
240.0 |
| HG13 |
CG1 |
CB |
CG2 |
285.0 |
180.0 |
| HG13 |
CG1 |
CB |
CG |
165.5 |
60.0 |
| CB |
CG1 |
HG13 |
HG11 |
120.0 |
120.0 |
| CB |
CG1 |
HG13 |
HG12 |
240.0 |
240.0 |
| HG11 |
CG1 |
HG13 |
HG12 |
120.0 |
120.0 |
| HG21 |
CG2 |
CB |
CG |
249.2 |
300.0 |
| CB |
CG2 |
HG21 |
HG22 |
120.0 |
120.0 |
| CB |
CG2 |
HG21 |
HG23 |
240.0 |
240.0 |
| HG22 |
CG2 |
HG21 |
HG23 |
120.0 |
120.0 |
| HG22 |
CG2 |
CB |
CG |
9.2 |
60.0 |
| CB |
CG2 |
HG22 |
HG21 |
240.0 |
240.0 |
| CB |
CG2 |
HG22 |
HG23 |
120.0 |
120.0 |
| HG21 |
CG2 |
HG22 |
HG23 |
240.0 |
240.0 |
| HG23 |
CG2 |
CB |
CG |
129.2 |
180.0 |
| CB |
CG2 |
HG23 |
HG21 |
120.0 |
120.0 |
| CB |
CG2 |
HG23 |
HG22 |
240.0 |
240.0 |
| HG21 |
CG2 |
HG23 |
HG22 |
120.0 |
120.0 |
| CB |
CG |
HG2 |
SD |
231.9 |
240.0 |
| CB |
CG |
HG2 |
HG3 |
116.0 |
120.0 |
| HG2 |
CG |
SD |
OE |
148.5 |
176.4 |
| HG2 |
CG |
SD |
CE |
48.2 |
60.0 |
| SD |
CG |
HG2 |
HG3 |
244.1 |
240.0 |
| CB |
CG |
HG3 |
SD |
125.6 |
120.1 |
| CB |
CG |
HG3 |
HG2 |
242.8 |
240.0 |
| HG3 |
CG |
SD |
OE |
23.7 |
56.4 |
| HG3 |
CG |
SD |
CE |
283.4 |
300.0 |
| SD |
CG |
HG3 |
HG2 |
117.2 |
120.0 |
| SD |
CE |
HE1 |
HE2 |
120.0 |
119.9 |
| SD |
CE |
HE1 |
HE3 |
240.0 |
240.0 |
| HE2 |
CE |
HE1 |
HE3 |
120.0 |
120.0 |
| SD |
CE |
HE2 |
HE1 |
240.0 |
240.0 |
| SD |
CE |
HE2 |
HE3 |
120.0 |
120.0 |
| HE1 |
CE |
HE2 |
HE3 |
240.0 |
239.9 |
| SD |
CE |
HE3 |
HE1 |
120.0 |
120.0 |
| SD |
CE |
HE3 |
HE2 |
240.0 |
240.0 |
| HE1 |
CE |
HE3 |
HE2 |
120.0 |
120.0 |