PDB Chemical Component M2L
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for M2L
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.463 |
1.469 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.008 |
| C |
CA |
1.503 |
1.507 |
| CA |
CB |
1.522 |
1.530 |
| CA |
HA |
1.100 |
1.089 |
| CB |
SG |
1.796 |
1.814 |
| CB |
HB |
1.100 |
1.090 |
| CB |
HBA |
1.100 |
1.090 |
| SG |
CD |
1.816 |
1.813 |
| CD |
CE |
1.585 |
1.530 |
| CD |
HD |
1.100 |
1.090 |
| CD |
HDA |
1.100 |
1.090 |
| NZ |
CE |
1.527 |
1.469 |
| CE |
HE |
1.101 |
1.091 |
| CE |
HEA |
1.100 |
1.090 |
| CM1 |
NZ |
1.547 |
1.469 |
| NZ |
CM2 |
1.579 |
1.469 |
| CM1 |
HM1 |
1.100 |
1.090 |
| CM1 |
HM1A |
1.100 |
1.091 |
| CM1 |
HM1B |
1.100 |
1.090 |
| CM2 |
HM2 |
1.100 |
1.090 |
| CM2 |
HM2A |
1.100 |
1.090 |
| CM2 |
HM2B |
1.100 |
1.090 |
| O |
C |
1.244 |
1.208 |
| C |
OXT |
1.319 |
1.342 |
| OXT |
HXT |
0.949 |
0.967 |
Bond Angles for M2L
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.1 |
| N |
CA |
CB |
114.3 |
109.4 |
| N |
CA |
HA |
109.8 |
109.5 |
| H |
N |
H2 |
109.4 |
111.0 |
| C |
CA |
HA |
116.2 |
109.5 |
| CB |
CA |
HA |
105.8 |
109.4 |
| CA |
CB |
SG |
109.8 |
109.5 |
| CA |
CB |
HB |
109.3 |
109.5 |
| CA |
CB |
HBA |
109.3 |
109.5 |
| SG |
CB |
HB |
109.4 |
109.4 |
| SG |
CB |
HBA |
109.3 |
109.5 |
| CB |
SG |
CD |
99.2 |
103.0 |
| HB |
CB |
HBA |
109.7 |
109.5 |
| SG |
CD |
CE |
107.9 |
109.5 |
| SG |
CD |
HD |
110.0 |
109.5 |
| SG |
CD |
HDA |
110.4 |
109.5 |
| CE |
CD |
HD |
110.0 |
109.4 |
| CE |
CD |
HDA |
110.3 |
109.5 |
| CD |
CE |
HE |
110.0 |
109.5 |
| CD |
CE |
HEA |
110.3 |
109.5 |
| HD |
CD |
HDA |
108.3 |
109.4 |
| NZ |
CE |
HE |
110.0 |
109.4 |
| NZ |
CE |
HEA |
110.3 |
109.5 |
| HE |
CE |
HEA |
108.3 |
109.4 |
| CM1 |
NZ |
CM2 |
107.7 |
111.0 |
| NZ |
CM2 |
HM2 |
109.5 |
109.5 |
| NZ |
CM2 |
HM2A |
109.5 |
109.5 |
| NZ |
CM2 |
HM2B |
109.4 |
109.4 |
| HM1 |
CM1 |
HM1A |
109.5 |
109.5 |
| HM1 |
CM1 |
HM1B |
109.5 |
109.4 |
| HM1A |
CM1 |
HM1B |
109.5 |
109.5 |
| HM2 |
CM2 |
HM2A |
109.4 |
109.5 |
| HM2 |
CM2 |
HM2B |
109.4 |
109.5 |
| HM2A |
CM2 |
HM2B |
109.5 |
109.4 |
| O |
C |
OXT |
122.9 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
Torsion Angles for M2L
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| C |
CA |
N |
HA |
235.4 |
240.0 |
| CB |
CA |
N |
HA |
118.6 |
120.0 |
| N |
CA |
CB |
SG |
253.4 |
300.0 |
| N |
CA |
CB |
HB |
13.5 |
60.0 |
| N |
CA |
CB |
HBA |
133.6 |
180.0 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| H |
N |
CA |
CB |
247.8 |
176.0 |
| H |
N |
CA |
HA |
129.2 |
56.0 |
| CA |
N |
H2 |
H |
240.0 |
236.0 |
| H2 |
N |
CA |
CB |
7.8 |
300.0 |
| H2 |
N |
CA |
HA |
249.1 |
180.0 |
| C |
CA |
N |
H |
4.5 |
296.0 |
| C |
CA |
N |
H2 |
124.5 |
60.0 |
| N |
CA |
C |
HA |
120.4 |
120.1 |
| CB |
CA |
C |
HA |
241.7 |
240.0 |
| C |
CA |
CB |
HB |
259.1 |
300.0 |
| C |
CA |
CB |
HBA |
19.2 |
60.0 |
| CB |
CA |
N |
H |
247.8 |
176.0 |
| CB |
CA |
N |
H2 |
7.8 |
300.0 |
| N |
CA |
CB |
HA |
239.1 |
240.0 |
| C |
CA |
CB |
HA |
124.8 |
120.0 |
| SG |
CB |
CA |
HB |
240.0 |
240.0 |
| SG |
CB |
CA |
HBA |
119.9 |
120.0 |
| CA |
CB |
SG |
CD |
279.9 |
180.0 |
| HB |
CB |
CA |
HBA |
239.9 |
240.0 |
| HA |
CA |
N |
H |
129.2 |
56.0 |
| HA |
CA |
N |
H2 |
249.1 |
180.0 |
| N |
CA |
HA |
CB |
123.8 |
120.0 |
| HA |
CA |
CB |
SG |
14.3 |
60.0 |
| HA |
CA |
CB |
HB |
134.3 |
180.0 |
| HA |
CA |
CB |
HBA |
254.4 |
300.0 |
| SG |
CB |
CA |
HA |
14.3 |
60.0 |
| CA |
CB |
SG |
HB |
120.0 |
120.0 |
| CA |
CB |
SG |
HBA |
240.1 |
240.0 |
| HB |
CB |
SG |
HBA |
120.1 |
120.0 |
| CB |
SG |
CD |
CE |
201.1 |
180.0 |
| CB |
SG |
CD |
HD |
321.1 |
300.0 |
| CB |
SG |
CD |
HDA |
80.5 |
59.9 |
| HB |
CB |
CA |
HA |
134.3 |
180.0 |
| CA |
CB |
HB |
SG |
239.7 |
240.0 |
| CA |
CB |
HB |
HBA |
119.8 |
120.0 |
| SG |
CB |
HB |
HBA |
240.1 |
240.0 |
| HB |
CB |
SG |
CD |
160.0 |
60.0 |
| HBA |
CB |
CA |
HA |
254.4 |
300.0 |
| CA |
CB |
HBA |
SG |
120.2 |
120.0 |
| CA |
CB |
HBA |
HB |
240.1 |
240.0 |
| SG |
CB |
HBA |
HB |
119.9 |
120.0 |
| HBA |
CB |
SG |
CD |
39.8 |
300.0 |
| CD |
SG |
CB |
HB |
160.0 |
60.0 |
| CD |
SG |
CB |
HBA |
39.8 |
300.0 |
| CE |
CD |
SG |
HD |
240.0 |
240.0 |
| CE |
CD |
SG |
HDA |
120.6 |
120.0 |
| SG |
CD |
CE |
HE |
58.8 |
300.0 |
| SG |
CD |
CE |
HEA |
178.2 |
60.0 |
| HD |
CD |
SG |
HDA |
240.6 |
240.0 |
| SG |
CD |
CE |
HD |
120.0 |
120.0 |
| SG |
CD |
CE |
HDA |
239.4 |
240.0 |
| HD |
CD |
CE |
HDA |
119.4 |
119.9 |
| NZ |
CE |
CD |
HE |
240.0 |
240.0 |
| NZ |
CE |
CD |
HEA |
120.6 |
120.1 |
| HE |
CE |
CD |
HEA |
240.6 |
240.0 |
| SG |
CD |
HD |
CE |
241.3 |
240.0 |
| SG |
CD |
HD |
HDA |
120.7 |
120.0 |
| CE |
CD |
HD |
HDA |
239.4 |
240.0 |
| HD |
CD |
CE |
HE |
298.8 |
180.0 |
| HD |
CD |
CE |
HEA |
58.2 |
299.9 |
| SG |
CD |
HDA |
CE |
119.2 |
120.1 |
| SG |
CD |
HDA |
HD |
239.6 |
240.0 |
| CE |
CD |
HDA |
HD |
120.4 |
119.9 |
| HDA |
CD |
CE |
HE |
179.4 |
60.0 |
| HDA |
CD |
CE |
HEA |
298.8 |
180.0 |
| NZ |
CE |
CD |
HD |
178.8 |
60.0 |
| NZ |
CE |
CD |
HDA |
59.4 |
300.1 |
| CD |
CE |
NZ |
HE |
120.0 |
120.0 |
| CD |
CE |
NZ |
HEA |
239.4 |
239.9 |
| HE |
CE |
NZ |
HEA |
119.4 |
119.9 |
| HE |
CE |
CD |
HD |
298.8 |
180.0 |
| HE |
CE |
CD |
HDA |
179.4 |
60.0 |
| CD |
CE |
HE |
HEA |
120.6 |
120.0 |
| NZ |
CE |
HE |
HEA |
239.4 |
240.0 |
| HEA |
CE |
CD |
HD |
58.2 |
299.9 |
| HEA |
CE |
CD |
HDA |
298.8 |
180.0 |
| CD |
CE |
HEA |
HE |
239.6 |
240.0 |
| NZ |
CE |
HEA |
HE |
120.4 |
119.9 |
| CM1 |
NZ |
CE |
HE |
239.8 |
306.0 |
| CM1 |
NZ |
CE |
HEA |
120.4 |
186.1 |
| CM1 |
NZ |
CM2 |
HM2 |
11.3 |
183.9 |
| CM1 |
NZ |
CM2 |
HM2A |
131.3 |
304.0 |
| CM1 |
NZ |
CM2 |
HM2B |
251.3 |
63.9 |
| CM2 |
NZ |
CE |
HE |
61.7 |
70.0 |
| CM2 |
NZ |
CE |
HEA |
302.3 |
310.1 |
| HM2 |
CM2 |
NZ |
HM2A |
240.0 |
240.0 |
| HM2 |
CM2 |
NZ |
HM2B |
120.0 |
120.0 |
| HM2A |
CM2 |
NZ |
HM2B |
239.9 |
240.0 |
| HM1 |
CM1 |
NZ |
CM2 |
162.9 |
296.0 |
| HM1A |
CM1 |
HM1 |
HM1B |
120.0 |
119.9 |
| HM1A |
CM1 |
NZ |
CM2 |
282.9 |
56.0 |
| HM1 |
CM1 |
HM1A |
HM1B |
240.0 |
240.1 |
| HM1B |
CM1 |
NZ |
CM2 |
42.9 |
176.0 |
| HM1 |
CM1 |
HM1B |
HM1A |
120.0 |
119.9 |
| NZ |
CM2 |
HM2 |
HM2A |
120.0 |
120.1 |
| NZ |
CM2 |
HM2 |
HM2B |
240.0 |
240.0 |
| HM2A |
CM2 |
HM2 |
HM2B |
120.0 |
119.9 |
| NZ |
CM2 |
HM2A |
HM2 |
240.0 |
239.9 |
| NZ |
CM2 |
HM2A |
HM2B |
120.0 |
120.0 |
| HM2 |
CM2 |
HM2A |
HM2B |
240.0 |
240.0 |
| NZ |
CM2 |
HM2B |
HM2 |
120.0 |
120.0 |
| NZ |
CM2 |
HM2B |
HM2A |
240.0 |
240.0 |
| HM2 |
CM2 |
HM2B |
HM2A |
120.0 |
120.0 |
| O |
C |
CA |
HA |
232.4 |
220.0 |
| O |
C |
OXT |
HXT |
360.0 |
360.0 |
| OXT |
C |
CA |
HA |
51.4 |
40.0 |