PDB Chemical Component M28

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for M28

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	S	1.743	1.746
C1	C2	1.438	1.395
C1	C6	1.402	1.395
C2	C3	1.404	1.395
C2	H2	1.080	1.087
C3	C4	1.415	1.394
C3	H3	1.080	1.087
C4	C5	1.420	1.395
C4	C7	1.479	1.492
C5	C6	1.382	1.395
C5	H5	1.080	1.087
C6	H6	1.080	1.087
S	O1	1.440	1.456
S	O2	1.455	1.456
S	N3	1.594	1.709
N3	HN31	1.000	1.027
N3	HN32	1.000	1.027
C7	C8	1.534	1.533
C7	H71	1.100	1.104
C7	H72	1.100	1.103
C8	C9	1.504	1.510
C8	H81	1.100	1.097
C8	H82	1.100	1.096
C9	O4	1.249	1.224
C9	O5	1.257	1.356
O5	HO5	0.950	0.980

Bond Angles for M28

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	S	121.4	120.0
C6	C1	S	117.6	120.1
C1	S	O1	105.2	108.3
C1	S	O2	106.3	108.5
C1	S	N3	105.4	101.0
C2	C1	C6	120.9	120.0
C1	C2	C3	119.4	120.0
C1	C2	H2	120.3	120.6
C1	C6	C5	118.0	120.0
C1	C6	H6	121.0	120.6
C3	C2	H2	120.3	119.4
C2	C3	C4	120.2	120.0
C2	C3	H3	119.9	119.5
C4	C3	H3	119.9	120.5
C3	C4	C5	118.1	120.0
C3	C4	C7	122.3	120.0
C5	C4	C7	119.6	120.0
C4	C5	C6	123.4	120.0
C4	C5	H5	118.3	120.6
C4	C7	C8	105.6	113.7
C4	C7	H71	110.8	110.5
C4	C7	H72	111.7	109.3
C6	C5	H5	118.3	119.5
C5	C6	H6	121.0	119.4
O1	S	O2	116.8	119.8
O1	S	N3	112.2	108.8
O2	S	N3	110.0	108.7
S	N3	HN31	109.5	118.0
S	N3	HN32	109.4	118.0
HN31	N3	HN32	109.4	113.9
C8	C7	H71	110.8	109.3
C8	C7	H72	111.6	108.5
C7	C8	C9	123.3	111.7
C7	C8	H81	105.1	110.3
C7	C8	H82	101.8	111.8
H71	C7	H72	106.5	105.1
C9	C8	H81	105.1	106.8
C9	C8	H82	101.8	110.2
C8	C9	O4	120.1	123.8
C8	C9	O5	120.0	112.9
H81	C8	H82	121.2	105.8
O4	C9	O5	119.9	123.3
C9	O5	HO5	109.5	115.5

Torsion Angles for M28

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	S	C6	179.4	180.0
S	C1	C2	C3	179.9	180.0
S	C1	C2	H2	359.9	360.0
S	C1	C6	C5	180.2	180.0
S	C1	C6	H6	0.1	0.1
O1	S	C1	O2	124.5	228.5
O1	S	C1	N3	241.3	114.3
O2	S	C1	N3	116.8	245.8
C1	S	N3	HN31	203.6	108.4
C1	S	N3	HN32	323.6	251.6
C6	C1	C2	S	179.4	180.0
C2	C1	S	O1	25.9	204.3
C2	C1	S	O2	261.4	335.8
C2	C1	S	N3	144.6	90.0
C2	C1	C6	C5	0.8	360.0
C2	C1	C6	H6	180.7	180.1
C3	C2	C1	H2	180.0	180.0
C1	C2	C3	C4	360.0	360.0
C1	C2	C3	H3	180.0	180.0
C2	C1	C6	S	180.6	180.0
C6	C1	S	O1	206.5	24.3
C6	C1	S	O2	82.0	155.8
C6	C1	S	N3	325.2	270.0
C6	C1	C2	C3	359.3	0.0
C6	C1	C2	H2	179.3	180.0
C4	C5	C6	C1	359.9	0.0
C1	C6	C5	H5	179.9	180.1
C5	C6	C1	H6	180.0	179.9
C3	C2	C1	S	179.9	180.0
C3	C2	C1	C6	359.3	0.0
C1	C2	C3	H2	180.0	180.0
C4	C3	C2	H3	180.0	180.0
C2	C3	C4	C5	0.6	0.0
C2	C3	C4	C7	180.2	180.0
H2	C2	C1	S	359.9	360.0
H2	C2	C1	C6	179.3	180.0
C1	C2	H2	C3	180.0	180.0
H2	C2	C3	C4	180.0	180.0
H2	C2	C3	H3	360.0	360.0
C4	C3	C2	H2	180.0	180.0
C2	C3	C4	H3	180.0	180.0
C5	C4	C3	C7	180.4	180.0
C3	C4	C5	C6	359.4	360.0
C3	C4	C5	H5	179.4	179.9
C3	C4	C7	C8	225.0	270.0
C3	C4	C7	H71	345.0	33.4
C3	C4	C7	H72	103.5	148.6
H3	C3	C2	H2	360.0	360.0
C2	C3	H3	C4	180.0	180.0
H3	C3	C4	C5	180.6	180.0
H3	C3	C4	C7	0.2	360.0
C1	C6	C5	C4	359.9	0.0
C5	C4	C3	H3	180.6	180.0
C3	C4	C5	C7	179.6	180.0
C5	C4	C7	C8	44.5	90.0
C5	C4	C7	H71	164.5	213.4
C5	C4	C7	H72	283.0	328.6
C6	C5	C4	H5	180.0	180.0
C4	C5	C6	H6	179.9	179.9
C7	C4	C3	H3	0.2	360.0
C3	C4	C7	C5	180.4	180.0
C7	C4	C5	C6	179.8	180.0
C7	C4	C5	H5	359.9	360.0
C8	C7	C4	H71	240.0	236.6
C8	C7	C4	H72	121.5	121.4
C4	C7	C8	C9	176.6	181.4
C4	C7	C8	H81	296.6	300.0
C4	C7	C8	H82	63.8	57.4
H71	C7	C4	H72	241.5	244.8
C5	C6	C1	S	180.2	180.0
C1	C6	C5	H6	180.0	180.1
C6	C5	C4	C7	179.8	180.0
C4	C5	C6	H5	180.0	180.0
H5	C5	C4	C7	359.9	360.0
C4	C5	H5	C6	180.0	180.0
H5	C5	C6	H6	359.9	360.0
H6	C6	C1	S	0.1	0.1
C1	C6	H6	C5	180.0	179.9
H6	C6	C5	H5	359.9	360.0
C1	S	O1	O2	242.4	125.1
C1	S	O1	N3	114.1	251.0
O2	S	O1	N3	231.6	125.9
O1	S	N3	HN31	317.5	354.5
O1	S	N3	HN32	77.5	137.7
C1	S	O2	O1	117.0	234.9
C1	S	O2	N3	246.4	109.0
O1	S	O2	N3	129.4	234.0
O2	S	N3	HN31	89.4	222.4
O2	S	N3	HN32	209.4	5.6
C1	S	N3	O1	246.1	113.9
C1	S	N3	O2	114.2	246.0
O1	S	N3	O2	228.1	132.1
HN31	N3	S	HN32	240.0	216.8
S	N3	HN31	HN32	120.0	144.7
S	N3	HN32	HN31	240.0	215.4
C4	C7	C8	H71	120.0	124.1
C4	C7	C8	H72	238.5	238.2
H71	C7	C8	H72	118.5	114.1
C9	C8	C7	H81	240.0	241.5
C9	C8	C7	H82	112.9	124.1
C7	C8	C9	O4	333.7	0.7
C7	C8	C9	O5	155.5	181.9
H81	C8	C7	H82	232.9	242.6
C4	C7	H71	C8	243.2	234.1
C4	C7	H71	H72	121.6	117.8
C8	C7	H71	H72	238.4	243.7
H71	C7	C8	C9	56.7	57.4
H71	C7	C8	H81	176.7	175.9
H71	C7	C8	H82	303.8	293.3
C4	C7	H72	C8	117.9	124.5
C4	C7	H72	H71	239.0	241.4
C8	C7	H72	H71	121.0	116.9
H72	C7	C8	C9	298.1	303.3
H72	C7	C8	H81	58.1	61.8
H72	C7	C8	H82	185.3	179.2
C9	C8	C7	H71	56.7	57.4
C9	C8	C7	H72	298.1	303.3
C7	C8	C9	H81	120.0	120.6
C7	C8	C9	H82	247.1	235.1
H81	C8	C9	H82	127.1	114.4
O4	C9	C8	O5	178.2	178.7
C8	C9	O5	HO5	178.1	178.7
H81	C8	C7	H71	176.7	175.9
H81	C8	C7	H72	58.1	61.8
C7	C8	H81	C9	228.5	238.5
C7	C8	H81	H82	114.3	121.1
C9	C8	H81	H82	245.8	242.6
H81	C8	C9	O4	213.7	240.0
H81	C8	C9	O5	35.5	61.3
H82	C8	C7	H71	303.8	293.3
H82	C8	C7	H72	185.3	179.2
C7	C8	H82	C9	128.1	124.8
C7	C8	H82	H81	244.1	239.9
C9	C8	H82	H81	115.9	115.1
H82	C8	C9	O4	86.5	125.6
H82	C8	C9	O5	268.4	306.9
O4	C9	C8	H81	213.7	240.0
O4	C9	C8	H82	86.5	125.6
C8	C9	O4	O5	181.8	181.4
O4	C9	O5	HO5	360.0	360.0
O5	C9	C8	H81	35.5	61.3
O5	C9	C8	H82	268.4	306.9
C8	C9	O5	O4	178.2	178.7