PDB Chemical Component M24

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for M24

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O5' P 1.610 1.610
P O1P 1.522 1.480
P O2P 1.619 1.611
P O3P 1.493 1.610
C2 N1 1.346 1.321
N1 C6 1.350 1.330
C2 N3 1.340 1.316
C2 H2 1.080 1.080
N3 C4 1.359 1.329
C4 C5 1.373 1.405
C4 N9 1.329 1.372
C6 C5 1.473 1.405
C5 N7 1.362 1.355
C6 N6 1.366 1.384
N6 HN6 1.000 0.970
N6 HN6A 1.000 0.969
N7 C8 1.350 1.301
N9 C8 1.333 1.364
C8 H8 1.081 1.079
N9 C1' 1.473 1.465
C2' C1' 1.522 1.545
C1' O4' 1.427 1.444
C1' H1' 1.100 1.090
O2' C2' 1.420 1.430
C2' C3' 1.508 1.545
C2' H2' 1.100 1.090
O2' HO2' 0.950 0.967
O25 C24 1.219 1.215
C24 C26 1.516 1.478
C24 O2P 1.431 1.347
C31 C26 1.379 1.393
C26 C27 1.396 1.398
C27 C28 1.385 1.380
C27 H27 1.080 1.080
C29 C28 1.379 1.382
C28 H28 1.080 1.080
C30 C29 1.375 1.394
C29 H29 1.080 1.081
C3' O3' 1.438 1.430
C3' C4' 1.524 1.545
C3' H3' 1.100 1.090
O3' HO3' 0.950 0.967
C32 C30 1.478 1.484
C31 C30 1.400 1.390
C31 H31 1.080 1.080
N33 C32 1.328 1.309
C32 N36 1.370 1.350
O34 N33 1.336 1.213
O34 C35 1.332 1.342
C37 C35 1.459 1.478
C35 N36 1.355 1.320
C38 C37 1.376 1.395
C37 C42 1.371 1.399
C38 C39 1.390 1.380
C38 H38 1.080 1.080
C39 C40 1.391 1.384
C39 H39 1.080 1.080
O3P HO3P 0.950 0.968
O4' C4' 1.446 1.444
C4' C5' 1.521 1.530
C4' H4' 1.100 1.089
C40 C41 1.390 1.382
C40 H40 1.080 1.081
C42 C41 1.378 1.382
C41 H41 1.080 1.080
C42 F43 1.340 1.351
C5' O5' 1.433 1.429
C5' H5' 1.100 1.090
C5' H5'A 1.100 1.091

Bond Angles for M24

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1P P O2P 108.2 109.4
O1P P O3P 121.3 109.5
O2P P O3P 98.6 109.5
P O2P C24 126.3 117.0
P O3P HO3P 109.5 114.0
C2 N1 C6 120.3 121.1
N1 C6 C5 118.4 118.5
N1 C6 N6 121.1 120.7
N3 C2 H2 118.7 118.8
C2 N3 C4 120.8 120.7
N3 C4 C5 120.1 119.1
N3 C4 N9 132.7 134.9
C5 C4 N9 107.1 106.0
C4 C5 N7 108.0 107.2
C4 N9 C8 109.2 107.4
C4 N9 C1' 124.9 126.3
C6 C5 N7 134.1 134.7
C5 N7 C8 106.4 109.4
C6 N6 HN6 109.5 120.0
C6 N6 HN6A 109.4 120.0
HN6 N6 HN6A 109.5 120.0
N7 C8 H8 125.4 125.1
N9 C8 H8 125.4 125.0
N9 C1' O4' 108.9 110.4
N9 C1' H1' 107.6 110.3
C2' C1' O4' 107.0 104.8
C2' C1' H1' 109.5 110.5
O4' C1' H1' 112.2 110.4
C1' O4' C4' 110.2 105.3
O2' C2' C3' 108.1 110.5
O2' C2' H2' 110.6 110.6
C3' C2' H2' 112.8 110.5
C2' C3' O3' 110.4 110.5
C2' C3' C4' 103.0 104.1
C2' C3' H3' 114.2 110.5
O25 C24 C26 124.8 119.9
O25 C24 O2P 119.1 120.1
C26 C24 O2P 116.0 120.0
C24 C26 C27 117.6 120.0
C26 C27 C28 121.3 120.0
C26 C27 H27 119.4 120.0
C28 C27 H27 119.3 120.0
C27 C28 H28 120.1 119.8
C29 C28 H28 120.1 119.9
C30 C29 H29 120.5 119.9
O3' C3' C4' 112.8 110.5
O3' C3' H3' 104.7 110.4
C3' O3' HO3' 109.5 114.0
C4' C3' H3' 111.9 110.7
C3' C4' C5' 112.2 110.4
C3' C4' H4' 110.4 110.4
N33 C32 N36 109.5 107.4
C32 N36 C35 106.8 105.5
O34 C35 N36 106.3 106.9
C38 C37 C42 122.4 119.7
C37 C42 C41 119.5 119.8
C37 C42 F43 117.0 120.1
C39 C38 H38 120.8 120.0
C38 C39 C40 119.7 120.1
C38 C39 H39 120.1 119.9
C40 C39 H39 120.2 119.9
C39 C40 C41 120.6 120.4
C39 C40 H40 119.7 119.8
O4' C4' C5' 110.2 110.4
O4' C4' H4' 112.4 110.5
C5' C4' H4' 105.9 110.4
C4' C5' O5' 107.2 109.5
C4' C5' H5' 110.3 109.5
C4' C5' H5'A 110.3 109.5
C41 C40 H40 119.7 119.8
C40 C41 H41 120.4 119.9
C42 C41 H41 120.3 120.0
O5' C5' H5' 110.2 109.5
O5' C5' H5'A 110.3 109.5
H5' C5' H5'A 108.7 109.4

Torsion Angles for M24

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O5' P O3P HO3P 225.9 60.0
O2P P O1P O3P 247.4 240.0
O1P P O2P C24 302.1 55.0
O1P P O3P HO3P 0.0 180.1
O1P P O2P O3P 127.1 120.0
O2P P O3P HO3P 117.5 300.0
O25 C24 O2P P 349.0 359.9
C26 C24 O2P P 168.6 180.0
O1P P O3P O2P 242.5 240.1
O3P P O2P C24 175.0 295.0
C2 N1 C6 C5 1.2 360.0
C2 N1 C6 N6 179.4 180.0
N1 C6 C5 N7 178.7 180.0
N1 C6 N6 HN6 360.0 360.0
N1 C6 N6 HN6A 120.0 180.0
N3 C2 N1 C6 359.9 0.0
C2 N3 C4 C5 1.4 0.0
C2 N3 C4 N9 180.6 180.0
H2 C2 N1 C6 179.9 180.1
H2 C2 N3 C4 178.7 179.9
C4 N3 C2 H2 178.7 179.9
C5 C4 N3 N9 180.8 180.1
N3 C4 C5 N7 179.9 180.0
N3 C4 N9 C8 181.2 180.0
N3 C4 N9 C1' 359.4 0.0
N1 C6 C5 C4 359.0 0.0
N3 C4 C5 N9 179.4 180.0
C5 C4 N9 C8 0.4 360.0
C5 C4 N9 C1' 178.6 180.0
C6 C5 C4 N7 179.8 180.0
C4 C5 N7 C8 358.7 360.0
N3 C4 N9 C5 180.8 180.1
N9 C4 C5 N7 0.6 0.0
C4 N9 C8 H8 178.7 180.1
C4 N9 C1' O4' 198.2 203.5
C4 N9 C1' H1' 320.0 325.8
N1 C6 C5 N6 178.2 180.0
C6 C5 C4 N9 180.4 180.0
C4 C5 C6 N7 180.2 180.0
C6 C5 N7 C8 178.9 180.0
N7 C5 C4 N9 0.6 0.0
C5 N7 C8 H8 181.6 180.0
N1 C6 N6 C5 181.9 180.0
N6 C6 C5 N7 0.5 360.0
HN6 N6 C6 HN6A 240.0 180.0
C6 N6 HN6 HN6A 120.0 180.0
C6 N6 HN6A HN6 240.0 180.0
C4 N9 C8 N7 358.7 360.0
N9 C8 N7 H8 180.0 180.1
C4 N9 C8 C1' 178.2 180.0
N7 C8 N9 H8 180.0 179.9
C4 N9 C1' C8 182.1 180.0
C1' N9 C8 H8 0.5 0.1
C2' C1' N9 O4' 242.0 244.6
C2' C1' N9 H1' 120.2 122.4
O4' C1' N9 H1' 238.1 237.7
N9 C1' O4' C4' 240.7 200.6
N9 C1' C2' O4' 119.1 118.9
N9 C1' C2' H1' 240.9 237.7
O4' C1' C2' H1' 121.8 118.9
C2' C1' O4' C4' 1.6 319.4
N9 C1' O4' H1' 119.0 122.2
C2' C1' O4' H1' 239.9 241.1
C1' O4' C4' C5' 139.3 159.3
C1' O4' C4' H4' 257.2 281.7
N9 C1' H1' O4' 240.2 237.7
C2' C1' H1' O4' 118.6 115.4
H1' C1' O4' C4' 121.7 78.4
O2' C2' C1' O4' 93.9 142.6
O2' C2' C1' H1' 332.1 23.7
C3' C2' O2' H2' 236.1 237.3
O2' C2' C3' O3' 37.5 0.0
O2' C2' C3' C4' 276.8 241.4
O2' C2' C3' H3' 155.2 122.6
C3' C2' C1' O4' 339.6 24.0
C3' C2' C1' H1' 217.8 265.1
O2' C2' C3' H2' 122.5 122.7
O3' C3' C2' C4' 120.7 118.6
O3' C3' C2' H3' 242.3 237.5
C2' C3' O3' HO3' 180.0 61.4
C4' C3' C2' H3' 121.6 118.8
C2' C3' C4' C5' 210.1 217.2
C2' C3' C4' H4' 92.2 95.0
H2' C2' C1' O4' 216.2 265.4
H2' C2' C1' H1' 94.4 146.5
O2' C2' H2' C3' 238.9 237.3
H2' C2' C3' O3' 275.0 237.3
H2' C2' C3' C4' 154.3 118.7
H2' C2' C3' H3' 32.7 359.8
HO2' O2' C2' C3' 291.7 294.6
HO2' O2' C2' H2' 55.5 57.3
P O2P C24 O25 349.0 359.9
C26 C24 O25 O2P 180.5 180.0
O25 C24 C26 C27 166.8 180.1
P O2P C24 C26 168.6 180.0
O25 C24 C26 O2P 179.5 180.0
C24 C26 C27 C28 179.5 180.0
C24 C26 C27 H27 359.5 359.9
C24 O2P P O3P 175.0 295.0
O25 C24 O2P C26 180.4 180.0
O2P C24 C26 C27 347.3 0.0
C31 C26 C27 H27 179.3 180.2
C27 C26 C24 O2P 347.3 0.0
C28 C27 C26 H27 180.0 180.1
C26 C27 C28 H28 181.4 179.9
C26 C27 C28 H27 180.0 179.9
C29 C28 C27 H28 180.0 180.0
C26 C27 H27 C28 180.0 180.1
H27 C27 C28 H28 1.4 0.0
C29 C28 C27 H27 181.4 180.0
C27 C28 C29 H28 180.0 180.0
H28 C28 C27 H27 1.4 0.0
C30 C29 C28 H28 178.0 180.1
H29 C29 C28 H28 358.0 0.0
O3' C3' C2' H2' 275.0 237.3
C2' C3' O3' C4' 245.3 245.3
C2' C3' O3' H3' 123.4 122.6
C4' C3' O3' H3' 238.1 237.2
O3' C3' C4' C5' 91.1 98.5
O3' C3' C4' H4' 333.1 336.3
C1' O4' C4' C3' 17.8 40.6
C4' C3' C2' H2' 154.3 118.7
C2' C3' C4' O3' 119.1 118.7
C2' C3' C4' H3' 236.9 241.3
O3' C3' C4' H3' 117.8 122.6
C4' C3' O3' HO3' 294.6 176.0
O4' C4' C3' C5' 120.2 118.8
O4' C4' C3' H4' 238.1 241.0
C5' C4' C3' H4' 117.9 122.2
C3' C4' C5' O5' 178.0 184.9
C3' C4' C5' H5' 297.9 305.0
C3' C4' C5' H5'A 58.0 65.0
H3' C3' C2' H2' 32.7 359.8
C2' C3' H3' O3' 239.0 237.4
C2' C3' H3' C4' 116.5 114.8
O3' C3' H3' C4' 237.5 237.3
H3' C3' O3' HO3' 56.6 298.8
H3' C3' C4' C5' 333.3 335.9
H3' C3' C4' H4' 215.3 213.7
HO3' O3' C3' C4' 294.6 176.0
HO3' O3' C3' H3' 56.6 298.8
C32 C30 C29 H29 0.6 360.0
C31 C30 C29 H29 182.1 179.7
N33 C32 N36 C35 359.1 359.5
O34 C35 N36 C32 0.8 0.5
O34 N33 C32 N36 0.5 0.3
C32 N36 C35 O34 0.8 0.5
C38 C37 C42 C41 1.9 359.5
C38 C37 C42 F43 181.6 179.7
C37 C42 C41 H41 180.2 180.3
C39 C38 C37 C42 357.2 0.3
C40 C39 C38 H39 180.0 180.0
C38 C39 C40 C41 0.6 0.0
C38 C39 C40 H40 180.6 180.0
H38 C38 C37 C42 177.3 180.2
H38 C38 C39 C40 181.5 180.1
H38 C38 C39 H39 1.4 0.0
C40 C39 C38 H38 181.5 180.1
C38 C39 C40 H39 180.0 180.0
C41 C40 C39 H40 180.0 180.0
C39 C40 C41 H41 178.6 180.0
H39 C39 C38 H38 1.4 0.0
C38 C39 H39 C40 180.0 180.0
H39 C39 C40 C41 180.6 180.1
H39 C39 C40 H40 0.6 0.1
C4' O4' C1' H1' 121.7 78.4
O4' C4' C3' H3' 93.5 94.7
C3' C4' O4' C5' 238.5 241.2
C3' C4' O4' H4' 120.6 118.9
C5' C4' O4' H4' 242.1 237.7
O4' C4' C5' O5' 60.4 69.6
O4' C4' C5' H5' 180.4 189.7
O4' C4' C5' H5'A 300.4 309.6
C5' C4' C3' H3' 333.3 335.9
C3' C4' C5' H4' 239.4 237.7
O4' C4' C5' H4' 121.9 122.4
O5' C5' C4' H5' 240.0 239.9
O5' C5' C4' H5'A 120.0 120.0
H5' C5' C4' H5'A 240.0 240.1
H4' C4' C3' H3' 215.3 213.7
C3' C4' H4' C5' 121.8 122.2
O4' C4' H4' C5' 239.5 237.7
H4' C4' C5' O5' 298.5 307.2
H4' C4' C5' H5' 58.5 67.3
H4' C4' C5' H5'A 178.5 187.2
C37 C42 C41 C40 0.2 0.5
C41 C40 C39 H39 180.6 180.1
C39 C40 C41 H40 180.0 180.0
C42 C41 C40 H41 180.0 179.8
H40 C40 C39 H39 0.6 0.1
C39 C40 H40 C41 180.0 180.0
H40 C40 C41 H41 358.6 359.9
C37 C42 C41 F43 179.7 180.2
C42 C41 C40 H40 178.6 179.7
C40 C41 C42 H41 180.0 180.2
H41 C41 C40 H40 358.6 359.9
C37 C42 F43 C41 180.3 179.8
F43 C42 C41 H41 0.5 0.1
O5' C5' C4' H4' 298.5 307.2
C4' C5' O5' H5' 120.0 120.0
C4' C5' O5' H5'A 240.0 240.0
H5' C5' O5' H5'A 120.0 120.0
H5' C5' C4' H4' 58.5 67.3
C4' C5' H5' O5' 241.9 240.0
C4' C5' H5' H5'A 121.0 120.0
O5' C5' H5' H5'A 239.1 240.0
H5'A C5' C4' H4' 178.5 187.2
C4' C5' H5'A O5' 118.1 120.0
C4' C5' H5'A H5' 239.0 240.0
O5' C5' H5'A H5' 120.9 120.0