PDB Chemical Component M1V
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for M1V
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CBD |
CAD |
1.525 |
1.529 |
| CAD |
C3D |
1.502 |
1.507 |
| OD |
C4D |
1.285 |
1.219 |
| C3D |
C4D |
1.486 |
1.411 |
| C3D |
C2D |
1.463 |
1.358 |
| C4D |
ND |
1.353 |
1.347 |
| C2D |
CMD |
1.497 |
1.507 |
| C2D |
C1D |
1.477 |
1.414 |
| ND |
C1D |
1.347 |
1.392 |
| C1D |
CHC |
1.446 |
1.377 |
| CMC |
C3C |
1.501 |
1.507 |
| CHC |
C4C |
1.458 |
1.418 |
| C3C |
C4C |
1.472 |
1.417 |
| C3C |
C2C |
1.448 |
1.358 |
| O2C |
CGC |
1.254 |
1.209 |
| C4C |
NC |
1.350 |
1.330 |
| CBC |
CGC |
1.502 |
1.507 |
| CBC |
CAC |
1.517 |
1.530 |
| C2C |
CAC |
1.498 |
1.507 |
| C2C |
C1C |
1.477 |
1.419 |
| CGC |
O1C |
1.256 |
1.342 |
| NC |
C1C |
1.368 |
1.339 |
| C1C |
CHB |
1.455 |
1.403 |
| CHB |
C4B |
1.445 |
1.398 |
| NB |
C4B |
1.352 |
1.378 |
| NB |
C1B |
1.355 |
1.369 |
| C4B |
C3B |
1.472 |
1.399 |
| O1B |
CGB |
1.251 |
1.208 |
| O2B |
CGB |
1.251 |
1.343 |
| CGB |
CBB |
1.499 |
1.507 |
| C1B |
CHA |
1.460 |
1.412 |
| C1B |
C2B |
1.472 |
1.395 |
| CHA |
C4A |
1.469 |
1.378 |
| C3B |
CAB |
1.507 |
1.508 |
| C3B |
C2B |
1.451 |
1.382 |
| CBA |
CAA |
1.524 |
1.531 |
| CAA |
C3A |
1.502 |
1.507 |
| CAB |
CBB |
1.529 |
1.529 |
| C2B |
CMB |
1.502 |
1.506 |
| C4A |
C3A |
1.484 |
1.418 |
| C4A |
NA |
1.378 |
1.389 |
| C3A |
C2A |
1.469 |
1.356 |
| NA |
C1A |
1.342 |
1.346 |
| C2A |
C1A |
1.481 |
1.416 |
| C2A |
CMA |
1.506 |
1.507 |
| C1A |
OA |
1.295 |
1.218 |
| CMA |
H1 |
1.100 |
1.090 |
| CMA |
H2 |
1.100 |
1.091 |
| CMA |
H3 |
1.100 |
1.090 |
| CAA |
H4 |
1.100 |
1.090 |
| CAA |
H5 |
1.100 |
1.089 |
| CBA |
H6 |
1.100 |
1.090 |
| CBA |
H7 |
1.100 |
1.090 |
| CBA |
H8 |
1.100 |
1.089 |
| CHA |
H9 |
1.080 |
1.080 |
| CMB |
H11 |
1.100 |
1.090 |
| CMB |
H12 |
1.100 |
1.090 |
| CMB |
H13 |
1.100 |
1.090 |
| CAB |
H14 |
1.100 |
1.090 |
| CAB |
H15 |
1.100 |
1.090 |
| CBB |
H16 |
1.100 |
1.090 |
| CBB |
H17 |
1.100 |
1.089 |
| O2B |
H18 |
0.949 |
0.966 |
| NB |
H19 |
1.000 |
0.970 |
| CHB |
H20 |
1.080 |
1.080 |
| CAC |
H22 |
1.099 |
1.090 |
| CAC |
H23 |
1.100 |
1.090 |
| CBC |
H24 |
1.100 |
1.090 |
| CBC |
H25 |
1.100 |
1.091 |
| O1C |
H26 |
0.950 |
0.967 |
| CMC |
H27 |
1.100 |
1.090 |
| CMC |
H28 |
1.100 |
1.090 |
| CMC |
H29 |
1.100 |
1.090 |
| CHC |
H31 |
1.080 |
1.079 |
| CMD |
H33 |
1.100 |
1.090 |
| CMD |
H34 |
1.100 |
1.090 |
| CMD |
H35 |
1.100 |
1.090 |
| CAD |
H36 |
1.100 |
1.090 |
| CAD |
H37 |
1.100 |
1.091 |
| CBD |
H38 |
1.100 |
1.090 |
| CBD |
H39 |
1.100 |
1.090 |
| CBD |
H40 |
1.100 |
1.090 |
| NA |
H41 |
1.000 |
0.970 |
| ND |
H10 |
1.000 |
0.970 |
Bond Angles for M1V
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CBD |
CAD |
H36 |
108.9 |
109.5 |
| CBD |
CAD |
H37 |
108.9 |
109.5 |
| C4D |
ND |
H10 |
125.2 |
125.9 |
| C2D |
CMD |
H33 |
109.5 |
109.5 |
| C2D |
CMD |
H34 |
109.5 |
109.5 |
| C2D |
CMD |
H35 |
109.4 |
109.5 |
| C1D |
CHC |
H31 |
116.9 |
120.0 |
| CMC |
C3C |
C4C |
129.8 |
126.5 |
| C3C |
C4C |
NC |
112.5 |
108.5 |
| O2C |
CGC |
O1C |
124.9 |
120.0 |
| CBC |
CGC |
O1C |
117.4 |
120.0 |
| CGC |
CBC |
H24 |
110.4 |
109.4 |
| CGC |
CBC |
H25 |
110.4 |
109.4 |
| CBC |
CAC |
H22 |
109.5 |
109.5 |
| CBC |
CAC |
H23 |
109.5 |
109.5 |
| C2C |
CAC |
H22 |
109.5 |
109.4 |
| C2C |
CAC |
H23 |
109.5 |
109.4 |
| CGC |
O1C |
H26 |
109.5 |
117.0 |
| C1C |
CHB |
H20 |
116.5 |
120.0 |
| C4B |
NB |
H19 |
126.0 |
125.7 |
| CGB |
CBB |
H16 |
109.9 |
109.5 |
| CGB |
CBB |
H17 |
109.9 |
109.5 |
| C1B |
CHA |
H9 |
115.2 |
120.0 |
| C1B |
C2B |
CMB |
129.7 |
126.1 |
| C3B |
CAB |
CBB |
108.8 |
109.5 |
| C3B |
CAB |
H14 |
109.6 |
109.4 |
| C3B |
CAB |
H15 |
109.7 |
109.5 |
| CBA |
CAA |
H4 |
109.6 |
109.4 |
| CBA |
CAA |
H5 |
109.6 |
109.5 |
| CBB |
CAB |
H14 |
109.7 |
109.5 |
| CBB |
CAB |
H15 |
109.6 |
109.5 |
| CAB |
CBB |
H16 |
109.9 |
109.5 |
| CAB |
CBB |
H17 |
109.9 |
109.5 |
| C2B |
CMB |
H11 |
109.5 |
109.5 |
| C2B |
CMB |
H12 |
109.4 |
109.5 |
| C2B |
CMB |
H13 |
109.5 |
109.5 |
| C4A |
NA |
H41 |
124.1 |
125.8 |
| C2A |
CMA |
H1 |
109.5 |
109.5 |
| C2A |
CMA |
H2 |
109.5 |
109.4 |
| C2A |
CMA |
H3 |
109.5 |
109.5 |
| H1 |
CMA |
H2 |
109.5 |
109.5 |
| H1 |
CMA |
H3 |
109.4 |
109.5 |
| H2 |
CMA |
H3 |
109.5 |
109.4 |
| H4 |
CAA |
H5 |
109.4 |
109.4 |
| H6 |
CBA |
H7 |
109.5 |
109.4 |
| H6 |
CBA |
H8 |
109.5 |
109.5 |
| H7 |
CBA |
H8 |
109.5 |
109.5 |
| H11 |
CMB |
H12 |
109.5 |
109.4 |
| H11 |
CMB |
H13 |
109.5 |
109.4 |
| H12 |
CMB |
H13 |
109.5 |
109.5 |
| H14 |
CAB |
H15 |
109.5 |
109.4 |
| H16 |
CBB |
H17 |
109.5 |
109.5 |
| H22 |
CAC |
H23 |
109.5 |
109.4 |
| H24 |
CBC |
H25 |
109.5 |
109.5 |
| H27 |
CMC |
H28 |
109.5 |
109.5 |
| H27 |
CMC |
H29 |
109.5 |
109.5 |
| H28 |
CMC |
H29 |
109.4 |
109.4 |
| H33 |
CMD |
H34 |
109.5 |
109.4 |
| H33 |
CMD |
H35 |
109.4 |
109.5 |
| H34 |
CMD |
H35 |
109.5 |
109.4 |
| H36 |
CAD |
H37 |
109.5 |
109.4 |
| H38 |
CBD |
H39 |
109.5 |
109.5 |
| H38 |
CBD |
H40 |
109.5 |
109.4 |
| H39 |
CBD |
H40 |
109.5 |
109.5 |
Torsion Angles for M1V
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H36 |
CAD |
CBD |
H37 |
240.7 |
120.0 |
| OD |
C4D |
ND |
H10 |
359.9 |
360.0 |
| C3D |
C4D |
ND |
H10 |
178.0 |
180.1 |
| C3D |
C2D |
CMD |
H33 |
180.0 |
180.0 |
| C3D |
C2D |
CMD |
H34 |
300.0 |
300.0 |
| C3D |
C2D |
CMD |
H35 |
60.0 |
60.0 |
| H33 |
CMD |
C2D |
H34 |
240.0 |
240.0 |
| H33 |
CMD |
C2D |
H35 |
120.0 |
120.1 |
| H34 |
CMD |
C2D |
H35 |
240.0 |
240.0 |
| C2D |
C1D |
CHC |
H31 |
6.6 |
6.5 |
| ND |
C1D |
CHC |
H31 |
185.8 |
186.1 |
| CMC |
C3C |
C4C |
NC |
178.5 |
180.0 |
| C3C |
C2C |
CAC |
H22 |
316.4 |
215.0 |
| C3C |
C2C |
CAC |
H23 |
196.4 |
335.0 |
| CBC |
CGC |
O2C |
O1C |
181.9 |
180.1 |
| O2C |
CGC |
CBC |
H24 |
201.3 |
240.0 |
| O2C |
CGC |
CBC |
H25 |
322.4 |
120.0 |
| O2C |
CGC |
O1C |
H26 |
0.0 |
0.1 |
| O2C |
CGC |
CBC |
O1C |
178.2 |
179.9 |
| CGC |
CBC |
CAC |
H22 |
299.5 |
60.0 |
| CGC |
CBC |
CAC |
H23 |
59.5 |
300.0 |
| CBC |
CGC |
O1C |
H26 |
178.1 |
180.0 |
| H24 |
CBC |
CGC |
H25 |
238.9 |
120.0 |
| C2C |
CAC |
CBC |
H22 |
240.0 |
120.0 |
| C2C |
CAC |
CBC |
H23 |
120.0 |
240.0 |
| H22 |
CAC |
CBC |
H23 |
240.0 |
120.0 |
| CBC |
CAC |
C2C |
H22 |
120.0 |
239.9 |
| CBC |
CAC |
C2C |
H23 |
240.0 |
120.0 |
| H22 |
CAC |
C2C |
H23 |
120.0 |
240.1 |
| C2C |
C1C |
CHB |
H20 |
2.8 |
7.0 |
| O1C |
CGC |
CBC |
H24 |
23.1 |
60.0 |
| O1C |
CGC |
CBC |
H25 |
144.2 |
300.0 |
| NC |
C1C |
CHB |
H20 |
181.6 |
186.7 |
| CHB |
C4B |
NB |
H19 |
1.3 |
359.6 |
| NB |
C1B |
CHA |
H9 |
27.3 |
197.0 |
| C4B |
C3B |
CAB |
H14 |
231.8 |
30.1 |
| C4B |
C3B |
CAB |
H15 |
352.0 |
150.0 |
| O1B |
CGB |
CBB |
H16 |
52.2 |
240.0 |
| O1B |
CGB |
CBB |
H17 |
172.7 |
120.0 |
| O2B |
CGB |
CBB |
H16 |
231.3 |
60.0 |
| O2B |
CGB |
CBB |
H17 |
351.9 |
300.0 |
| CGB |
CBB |
CAB |
H14 |
166.0 |
60.0 |
| CGB |
CBB |
CAB |
H15 |
45.8 |
300.0 |
| CAB |
CBB |
CGB |
H16 |
240.3 |
120.0 |
| CAB |
CBB |
CGB |
H17 |
119.7 |
240.0 |
| H16 |
CBB |
CGB |
H17 |
239.4 |
120.0 |
| C2B |
C1B |
CHA |
H9 |
208.8 |
17.3 |
| C1B |
C2B |
CMB |
H11 |
88.1 |
90.0 |
| C1B |
C2B |
CMB |
H12 |
208.1 |
209.9 |
| C1B |
C2B |
CMB |
H13 |
328.1 |
330.0 |
| CHA |
C4A |
NA |
H41 |
0.8 |
359.8 |
| CBB |
CAB |
C3B |
H14 |
240.1 |
240.0 |
| CBB |
CAB |
C3B |
H15 |
119.9 |
120.1 |
| C3B |
CAB |
CBB |
H16 |
166.1 |
300.0 |
| C3B |
CAB |
CBB |
H17 |
45.6 |
59.9 |
| H14 |
CAB |
C3B |
H15 |
239.8 |
240.1 |
| C3B |
C2B |
CMB |
H11 |
271.6 |
270.0 |
| C3B |
C2B |
CMB |
H12 |
31.6 |
30.0 |
| C3B |
C2B |
CMB |
H13 |
151.6 |
150.1 |
| H4 |
CAA |
CBA |
H5 |
239.9 |
119.9 |
| CGB |
CBB |
CAB |
H16 |
119.7 |
240.0 |
| CGB |
CBB |
CAB |
H17 |
240.3 |
120.1 |
| C3B |
CAB |
CBB |
H14 |
119.9 |
120.0 |
| C3B |
CAB |
CBB |
H15 |
240.1 |
240.0 |
| H14 |
CAB |
CBB |
H15 |
120.2 |
120.0 |
| H16 |
CBB |
CAB |
H17 |
120.5 |
240.0 |
| H11 |
CMB |
C2B |
H12 |
240.0 |
240.0 |
| H11 |
CMB |
C2B |
H13 |
120.0 |
120.0 |
| H12 |
CMB |
C2B |
H13 |
240.0 |
239.9 |
| C3A |
C4A |
NA |
H41 |
179.2 |
179.9 |
| C3A |
C2A |
CMA |
H1 |
180.0 |
175.1 |
| C3A |
C2A |
CMA |
H2 |
300.0 |
295.1 |
| C3A |
C2A |
CMA |
H3 |
60.0 |
55.0 |
| H1 |
CMA |
C2A |
H2 |
240.0 |
240.0 |
| H1 |
CMA |
C2A |
H3 |
120.0 |
120.1 |
| H2 |
CMA |
C2A |
H3 |
240.0 |
240.1 |
| C2A |
CMA |
H1 |
H2 |
120.0 |
120.0 |
| C2A |
CMA |
H1 |
H3 |
240.0 |
240.0 |
| H2 |
CMA |
H1 |
H3 |
120.0 |
120.0 |
| C2A |
CMA |
H2 |
H1 |
240.0 |
240.0 |
| C2A |
CMA |
H2 |
H3 |
120.0 |
120.0 |
| H1 |
CMA |
H2 |
H3 |
240.0 |
240.0 |
| C2A |
CMA |
H3 |
H1 |
120.0 |
120.0 |
| C2A |
CMA |
H3 |
H2 |
240.0 |
240.1 |
| H1 |
CMA |
H3 |
H2 |
120.0 |
120.0 |
| CBA |
CAA |
H4 |
H5 |
120.2 |
240.0 |
| CBA |
CAA |
H5 |
H4 |
239.8 |
119.9 |
| H6 |
CBA |
CAA |
H4 |
300.0 |
180.0 |
| H6 |
CBA |
CAA |
H5 |
60.1 |
60.1 |
| H7 |
CBA |
H6 |
H8 |
120.0 |
120.0 |
| H7 |
CBA |
CAA |
H4 |
59.9 |
299.9 |
| H7 |
CBA |
CAA |
H5 |
180.1 |
180.0 |
| H6 |
CBA |
H7 |
H8 |
240.0 |
240.0 |
| H8 |
CBA |
CAA |
H4 |
180.0 |
60.0 |
| H8 |
CBA |
CAA |
H5 |
300.1 |
300.0 |
| H6 |
CBA |
H8 |
H7 |
120.0 |
120.0 |
| C2B |
CMB |
H11 |
H12 |
120.0 |
120.0 |
| C2B |
CMB |
H11 |
H13 |
240.0 |
240.0 |
| H12 |
CMB |
H11 |
H13 |
120.0 |
120.0 |
| C2B |
CMB |
H12 |
H11 |
240.0 |
240.0 |
| C2B |
CMB |
H12 |
H13 |
120.0 |
120.1 |
| H11 |
CMB |
H12 |
H13 |
240.0 |
240.1 |
| C2B |
CMB |
H13 |
H11 |
120.0 |
120.0 |
| C2B |
CMB |
H13 |
H12 |
240.1 |
239.9 |
| H11 |
CMB |
H13 |
H12 |
120.0 |
119.9 |
| C3B |
CAB |
H14 |
CBB |
240.7 |
240.0 |
| C3B |
CAB |
H14 |
H15 |
120.4 |
119.9 |
| CBB |
CAB |
H14 |
H15 |
239.7 |
239.9 |
| H14 |
CAB |
CBB |
H16 |
46.3 |
180.0 |
| H14 |
CAB |
CBB |
H17 |
285.7 |
299.9 |
| C3B |
CAB |
H15 |
CBB |
119.4 |
120.1 |
| C3B |
CAB |
H15 |
H14 |
239.7 |
240.1 |
| CBB |
CAB |
H15 |
H14 |
120.3 |
120.0 |
| H15 |
CAB |
CBB |
H16 |
286.1 |
60.0 |
| H15 |
CAB |
CBB |
H17 |
165.5 |
180.0 |
| CGB |
CBB |
H16 |
H17 |
120.8 |
240.0 |
| H16 |
CBB |
CAB |
H14 |
46.3 |
180.0 |
| H16 |
CBB |
CAB |
H15 |
286.1 |
60.0 |
| CAB |
CBB |
H16 |
H17 |
239.2 |
120.0 |
| CGB |
CBB |
H17 |
H16 |
239.2 |
120.0 |
| H17 |
CBB |
CAB |
H14 |
285.7 |
299.9 |
| H17 |
CBB |
CAB |
H15 |
165.5 |
180.0 |
| CAB |
CBB |
H17 |
H16 |
120.8 |
240.0 |
| CBC |
CAC |
H22 |
H23 |
120.0 |
240.0 |
| C2C |
CAC |
H22 |
H23 |
240.0 |
119.9 |
| CBC |
CAC |
H23 |
H22 |
240.0 |
120.1 |
| C2C |
CAC |
H23 |
H22 |
120.0 |
240.1 |
| H24 |
CBC |
CGC |
O1C |
23.1 |
60.0 |
| CGC |
CBC |
H24 |
H25 |
121.6 |
240.0 |
| H24 |
CBC |
CAC |
H22 |
180.1 |
180.0 |
| H24 |
CBC |
CAC |
H23 |
300.1 |
60.0 |
| H25 |
CBC |
CGC |
O1C |
144.2 |
300.0 |
| CGC |
CBC |
H25 |
H24 |
238.4 |
120.0 |
| H25 |
CBC |
CAC |
H22 |
59.0 |
300.0 |
| H25 |
CBC |
CAC |
H23 |
179.0 |
180.0 |
| H27 |
CMC |
C3C |
C4C |
180.0 |
0.0 |
| H28 |
CMC |
H27 |
H29 |
119.9 |
120.0 |
| H28 |
CMC |
C3C |
C4C |
300.0 |
120.1 |
| H27 |
CMC |
H28 |
H29 |
240.0 |
240.0 |
| H29 |
CMC |
C3C |
C4C |
60.0 |
240.0 |
| H27 |
CMC |
H29 |
H28 |
120.0 |
120.0 |
| C2D |
CMD |
H33 |
H34 |
120.0 |
120.0 |
| C2D |
CMD |
H33 |
H35 |
240.0 |
239.9 |
| H34 |
CMD |
H33 |
H35 |
120.0 |
119.9 |
| C2D |
CMD |
H34 |
H33 |
240.0 |
239.9 |
| C2D |
CMD |
H34 |
H35 |
120.0 |
120.0 |
| H33 |
CMD |
H34 |
H35 |
240.0 |
240.1 |
| C2D |
CMD |
H35 |
H33 |
120.0 |
120.1 |
| C2D |
CMD |
H35 |
H34 |
240.0 |
240.0 |
| H33 |
CMD |
H35 |
H34 |
120.0 |
119.9 |
| CBD |
CAD |
H36 |
H37 |
119.0 |
240.0 |
| CBD |
CAD |
H37 |
H36 |
241.0 |
120.0 |
| H38 |
CBD |
CAD |
H36 |
300.3 |
180.0 |
| H38 |
CBD |
CAD |
H37 |
59.7 |
60.0 |
| H39 |
CBD |
H38 |
H40 |
120.0 |
119.9 |
| H39 |
CBD |
CAD |
H36 |
60.4 |
300.0 |
| H39 |
CBD |
CAD |
H37 |
179.7 |
180.0 |
| H38 |
CBD |
H39 |
H40 |
240.0 |
240.1 |
| H40 |
CBD |
CAD |
H36 |
180.4 |
60.0 |
| H40 |
CBD |
CAD |
H37 |
299.7 |
300.0 |
| H38 |
CBD |
H40 |
H39 |
120.0 |
119.9 |