PDB Chemical Component M1G

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for M1G

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.480 1.479
P OP2 1.481 1.610
P OP3 1.606 1.610
P O5' 1.610 1.610
OP2 HOP2 0.951 0.967
OP3 HOP3 0.951 0.967
O5' C5' 1.432 1.428
C5' C4' 1.525 1.529
C5' H5' 1.090 1.090
C5' H5'' 1.091 1.090
C4' O4' 1.460 1.446
C4' C3' 1.506 1.544
C4' H4' 1.089 1.090
O4' C1' 1.457 1.444
C3' O3' 1.447 1.429
C3' C2' 1.502 1.545
C3' H3' 1.095 1.091
O3' HO3' 0.949 0.967
C2' C1' 1.548 1.544
C2' H2' 1.091 1.090
C2' H2'' 1.086 1.090
C1' N9 1.514 1.463
C1' H1' 1.090 1.090
N9 C8 1.378 1.365
N9 C4 1.446 1.371
C8 N7 1.275 1.301
C8 H8 1.085 1.078
N7 C5 1.373 1.355
C5 C6 1.377 1.410
C5 C4 1.359 1.403
C6 O6 1.222 1.219
C6 N1 1.326 1.351
N1 C2 1.362 1.369
N1 C8A 1.361 1.366
C2 N2 1.376 1.341
C2 N3 1.413 1.329
N2 C6A 1.394 1.313
N3 C4 1.398 1.330
C6A C7A 1.362 1.402
C6A H6A 1.091 1.080
C7A C8A 1.348 1.355
C7A H7A 1.103 1.080
C8A H8A 1.091 1.080

Bond Angles for M1G

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 119.8 109.5
OP1 P OP3 108.4 109.5
OP1 P O5' 108.4 109.5
OP2 P OP3 108.2 109.5
OP2 P O5' 108.2 109.5
P OP2 HOP2 119.8 106.8
OP3 P O5' 102.4 109.4
P OP3 HOP3 108.4 106.8
P O5' C5' 121.6 106.9
O5' C5' C4' 109.7 109.5
O5' C5' H5' 109.5 109.4
O5' C5' H5'' 109.3 109.4
C4' C5' H5' 109.5 109.5
C4' C5' H5'' 109.4 109.4
C5' C4' O4' 110.8 110.4
C5' C4' C3' 108.3 110.7
C5' C4' H4' 110.6 110.3
H5' C5' H5'' 109.4 109.5
O4' C4' C3' 106.4 104.7
O4' C4' H4' 110.2 110.3
C4' O4' C1' 109.0 105.4
C3' C4' H4' 110.5 110.2
C4' C3' O3' 109.6 110.6
C4' C3' C2' 101.4 104.2
C4' C3' H3' 110.4 110.5
O4' C1' C2' 104.7 104.8
O4' C1' N9 111.6 110.5
O4' C1' H1' 109.9 110.3
O3' C3' C2' 113.0 110.6
O3' C3' H3' 110.9 110.4
C3' O3' HO3' 109.5 106.8
C2' C3' H3' 111.2 110.5
C3' C2' C1' 104.8 104.1
C3' C2' H2' 109.3 110.5
C3' C2' H2'' 110.9 110.4
C1' C2' H2' 108.5 110.5
C1' C2' H2'' 113.8 110.5
C2' C1' N9 111.5 110.4
C2' C1' H1' 109.1 110.3
H2' C2' H2'' 109.4 110.6
N9 C1' H1' 110.0 110.4
C1' N9 C8 127.0 126.3
C1' N9 C4 132.1 126.2
C8 N9 C4 100.8 107.5
N9 C8 N7 118.1 109.9
N9 C8 H8 122.6 125.1
N9 C4 C5 105.7 106.0
N9 C4 N3 133.9 134.2
N7 C8 H8 119.3 125.1
C8 N7 C5 103.0 109.4
N7 C5 C6 127.1 134.1
N7 C5 C4 112.4 107.3
C6 C5 C4 120.5 118.6
C5 C6 O6 124.1 120.7
C5 C6 N1 120.4 118.6
C5 C4 N3 120.4 119.8
O6 C6 N1 115.5 120.7
C6 N1 C2 121.4 120.5
C6 N1 C8A 115.9 119.4
C2 N1 C8A 122.5 120.1
N1 C2 N2 117.1 120.0
N1 C2 N3 120.1 121.2
N1 C8A C7A 120.5 119.2
N1 C8A H8A 119.5 120.4
N2 C2 N3 122.8 118.8
C2 N2 C6A 119.9 121.1
C2 N3 C4 117.2 121.3
N2 C6A C7A 120.8 120.3
N2 C6A H6A 119.9 119.9
C7A C6A H6A 119.3 119.9
C6A C7A C8A 118.2 119.2
C6A C7A H7A 119.8 120.4
C8A C7A H7A 117.9 120.4
C7A C8A H8A 119.8 120.4

Torsion Angles for M1G

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 OP3 124.8 120.0
OP2 P OP1 O5' 235.2 240.0
OP1 P OP2 HOP2 180.0 300.0
OP3 P OP1 O5' 110.4 120.0
OP1 P OP3 HOP3 180.0 180.0
OP1 P O5' C5' 34.1 60.0
OP1 P OP2 OP3 235.2 240.0
OP1 P OP2 O5' 124.9 120.0
OP3 P OP2 O5' 249.8 240.0
OP2 P OP3 HOP3 48.6 59.9
OP2 P O5' C5' 165.5 180.0
OP1 P OP3 OP2 131.4 120.0
OP1 P OP3 O5' 245.6 240.0
OP2 P OP3 O5' 114.2 120.0
OP3 P OP2 HOP2 304.9 60.0
OP3 P O5' C5' 279.7 300.0
OP1 P O5' OP2 228.6 240.0
OP1 P O5' OP3 114.4 120.0
OP2 P O5' OP3 245.8 240.0
O5' P OP2 HOP2 55.1 180.0
O5' P OP3 HOP3 294.5 299.9
P O5' C5' C4' 236.8 180.1
P O5' C5' H5' 116.6 60.0
P O5' C5' H5'' 356.7 300.0
HOP2 OP2 P OP3 304.9 60.0
HOP2 OP2 P O5' 55.1 180.0
HOP3 OP3 P O5' 294.5 299.9
C4' C5' O5' H5' 120.2 120.1
C4' C5' O5' H5'' 240.1 240.0
O5' C5' C4' O4' 294.5 61.4
O5' C5' C4' C3' 50.7 176.9
O5' C5' C4' H4' 171.9 299.2
H5' C5' O5' H5'' 119.9 120.0
O5' C5' C4' H5' 239.8 240.0
O5' C5' C4' H5'' 119.9 120.0
H5' C5' C4' H5'' 240.1 240.0
O4' C4' C5' C3' 243.7 244.5
O4' C4' C5' H4' 122.5 122.2
C5' C4' O4' C1' 96.3 159.5
C3' C4' C5' H4' 238.8 237.7
C5' C4' C3' O3' 156.4 98.4
C5' C4' C3' C2' 276.0 217.3
C5' C4' C3' H3' 33.9 335.9
O5' C5' H5' C4' 120.4 120.1
O5' C5' H5' H5'' 240.2 240.1
C4' C5' H5' H5'' 119.9 120.0
H5' C5' C4' O4' 54.7 181.4
H5' C5' C4' C3' 171.0 296.9
H5' C5' C4' H4' 292.2 59.2
O5' C5' H5'' C4' 239.8 240.0
O5' C5' H5'' H5' 119.9 119.9
C4' C5' H5'' H5' 240.1 240.0
H5'' C5' C4' O4' 174.6 301.5
H5'' C5' C4' C3' 290.9 56.9
H5'' C5' C4' H4' 52.0 179.2
O4' C4' C5' H5' 54.7 181.4
O4' C4' C5' H5'' 174.6 301.5
C5' C4' O4' C3' 117.5 119.2
C5' C4' O4' H4' 237.2 237.8
C3' C4' O4' H4' 119.8 118.6
O4' C4' C3' O3' 275.4 217.5
O4' C4' C3' C2' 35.1 336.3
O4' C4' C3' H3' 153.0 95.0
C4' O4' C1' C2' 358.4 319.6
C4' O4' C1' N9 237.6 200.7
C4' O4' C1' H1' 115.4 78.3
C3' C4' C5' H5' 171.0 296.9
C3' C4' C5' H5'' 290.9 56.9
C5' C4' C3' O4' 240.9 241.0
C5' C4' C3' H4' 121.3 122.3
O4' C4' C3' H4' 240.4 241.4
C3' C4' O4' C1' 338.8 40.3
O3' C3' C4' C2' 240.4 241.2
O3' C3' C4' H3' 122.4 122.5
C4' C3' O3' HO3' 180.0 178.1
C2' C3' C4' H3' 242.1 241.3
C4' C3' C2' C1' 324.6 359.9
C4' C3' C2' H2' 80.7 118.5
C4' C3' C2' H2'' 201.4 241.2
H4' C4' C5' H5' 292.2 59.2
H4' C4' C5' H5'' 52.0 179.2
C5' C4' H4' O4' 122.8 122.3
C5' C4' H4' C3' 240.1 237.4
O4' C4' H4' C3' 117.3 115.1
H4' C4' O4' C1' 219.1 281.7
H4' C4' C3' O3' 35.1 336.1
H4' C4' C3' C2' 154.7 94.9
H4' C4' C3' H3' 272.6 213.6
C1' O4' C4' C3' 338.8 40.3
C1' O4' C4' H4' 219.1 281.7
C3' C2' C1' O4' 23.7 24.0
O4' C1' C2' H2' 267.0 265.3
O4' C1' C2' H2'' 145.0 142.5
C2' C1' O4' N9 120.8 118.9
C2' C1' O4' H1' 243.0 241.3
N9 C1' O4' H1' 122.3 122.4
O4' C1' N9 C8 115.7 25.5
O4' C1' N9 C4 292.5 205.2
O3' C3' C4' H4' 35.1 336.1
C4' C3' O3' C2' 112.3 114.9
C4' C3' O3' H3' 237.8 237.5
C2' C3' O3' H3' 125.6 122.6
O3' C3' C2' C1' 81.7 118.7
O3' C3' C2' H2' 197.9 237.4
O3' C3' C2' H2'' 318.6 0.0
C2' C3' C4' H4' 154.7 94.9
C4' C3' C2' O3' 242.8 241.2
C4' C3' C2' H3' 117.4 118.6
O4' C1' C2' C3' 23.7 24.0
O3' C3' C2' H3' 234.6 237.5
C2' C3' O3' HO3' 67.7 63.2
C1' C2' C3' H2' 243.9 241.3
C1' C2' C3' H2'' 123.2 118.6
C3' C2' C1' N9 144.5 142.9
C3' C2' C1' H1' 266.2 265.3
H2' C2' C3' H2'' 239.3 237.3
H3' C3' C4' H4' 272.6 213.6
C4' C3' H3' O3' 121.7 122.6
C4' C3' H3' C2' 248.2 245.2
O3' C3' H3' C2' 126.6 122.6
H3' C3' O3' HO3' 302.2 300.7
H3' C3' C2' C1' 207.2 241.2
H3' C3' C2' H2' 323.3 359.9
H3' C3' C2' H2'' 84.0 122.6
HO3' O3' C3' C2' 67.7 63.2
HO3' O3' C3' H3' 302.2 300.7
O4' C1' C2' N9 239.2 241.1
O4' C1' C2' H1' 117.5 118.7
C1' C2' C3' H3' 207.2 241.2
C3' C2' C1' H2' 116.7 118.7
C3' C2' C1' H2'' 238.7 241.4
H2' C2' C1' H2'' 122.0 122.8
N9 C1' C2' H1' 238.4 237.7
C2' C1' N9 C8 359.0 270.1
C2' C1' N9 C4 175.8 89.7
H2' C2' C3' H3' 323.3 359.9
C3' C2' H2' C1' 246.3 245.3
C3' C2' H2' H2'' 121.6 122.6
C1' C2' H2' H2'' 235.3 237.3
H2' C2' C1' N9 27.9 24.2
H2' C2' C1' H1' 149.5 146.6
H2'' C2' C3' H3' 84.0 122.6
C3' C2' H2'' C1' 117.8 114.6
C3' C2' H2'' H2' 239.3 237.4
C1' C2' H2'' H2' 121.5 122.7
H2'' C2' C1' N9 265.8 261.5
H2'' C2' C1' H1' 27.4 23.8
O4' C1' N9 C2' 116.7 115.4
O4' C1' N9 H1' 237.8 237.7
N9 C1' C2' H2' 27.9 24.2
N9 C1' C2' H2'' 265.8 261.5
C2' C1' N9 H1' 121.1 122.3
C8 N9 C1' C4 183.2 180.3
C1' N9 C8 N7 177.7 180.0
C1' N9 C8 H8 357.5 359.9
C1' N9 C4 C5 182.5 179.9
C1' N9 C4 N3 2.7 0.7
O4' C1' H1' C2' 245.8 244.7
O4' C1' H1' N9 123.3 122.4
H1' C1' C2' H2' 149.5 146.6
H1' C1' C2' H2'' 27.4 23.8
C2' C1' H1' N9 237.4 237.7
H1' C1' N9 C8 237.9 147.8
H1' C1' N9 C4 54.7 327.4
C8 N9 C1' H1' 237.9 147.8
C1' N9 C8 C4 177.6 179.7
C8 N9 C4 C5 359.9 359.7
C8 N9 C4 N3 180.1 180.4
N7 C8 N9 H8 180.2 180.1
N9 C8 N7 C5 359.9 360.0
C4 N9 C1' H1' 54.7 327.4
C1' N9 C4 C8 182.6 180.3
C4 N9 C8 N7 0.1 0.3
C4 N9 C8 H8 179.9 180.2
N7 C5 C4 N9 360.0 0.3
C6 C5 C4 N9 180.2 180.2
C5 C4 N9 N3 179.8 179.2
C2 N3 C4 N9 180.3 179.6
N7 C8 N9 C4 0.1 0.3
N9 C8 N7 H8 179.8 179.9
C8 N7 C5 C6 179.8 180.0
C8 N7 C5 C4 0.1 359.8
H8 C8 N9 C4 179.9 180.2
N9 C8 H8 N7 180.2 180.1
H8 C8 N7 C5 180.1 180.0
N9 C4 C5 N7 360.0 0.3
C5 N7 C8 H8 180.1 180.0
C6 C5 N7 C4 179.7 180.2
N7 C5 C6 O6 0.8 0.1
N7 C5 C6 N1 179.7 180.0
N7 C5 C4 N3 179.8 179.7
N9 C4 C5 C6 180.2 180.2
N7 C5 C6 C4 180.3 179.8
C6 C5 C4 N3 0.1 359.5
O6 C6 C5 N1 181.0 180.1
C5 C6 N1 C2 0.4 0.1
C5 C6 N1 C8A 175.2 180.0
N9 C4 C5 N3 180.1 180.7
N7 C5 C4 C6 179.7 180.2
C4 C5 C6 O6 180.5 180.3
C4 C5 C6 N1 359.4 0.2
C2 N3 C4 C5 0.5 0.5
O6 C6 C5 C4 180.5 180.3
C5 C6 O6 N1 179.0 179.9
O6 C6 N1 C2 179.4 180.0
O6 C6 N1 C8A 354.2 360.0
N1 C6 C5 C4 359.4 0.2
C5 C6 N1 O6 180.9 180.1
C2 N1 C6 C8A 185.2 180.1
C6 N1 C2 N2 179.1 180.0
C6 N1 C2 N3 0.3 360.0
C6 N1 C8A C7A 188.6 180.0
C6 N1 C8A H8A 5.1 359.9
C6 N1 C2 C8A 174.5 179.9
C2 N1 C8A C7A 3.4 360.0
C2 N1 C8A H8A 179.8 179.9
N2 C2 N1 N3 178.8 180.0
N1 C2 N2 C6A 355.0 360.0
N1 C2 N3 C4 359.3 359.8
C6 N1 C8A C2 185.3 180.1
C8A N1 C2 N2 4.6 0.0
C8A N1 C2 N3 185.8 180.0
C6A C7A C8A N1 349.1 360.0
N1 C8A C7A H7A 191.7 180.0
C7A C8A N1 H8A 183.6 180.1
N2 C2 N1 C8A 4.6 0.0
N1 C2 N2 N3 181.2 180.0
N2 C2 N3 C4 180.5 179.7
C2 N2 C6A C7A 357.5 0.0
C2 N2 C6A H6A 179.4 180.0
N9 C4 N3 C2 180.3 179.6
C5 C4 N3 C2 0.5 0.5
N3 C2 N1 C8A 185.8 180.0
N1 C2 N3 N2 178.8 180.0
N3 C2 N2 C6A 173.8 180.0
C6A N2 C2 N3 173.8 180.0
C7A C6A N2 H6A 178.1 180.0
N2 C6A C7A C8A 10.4 0.0
N2 C6A C7A H7A 167.4 180.0
N9 C4 N3 C5 179.8 179.1
N1 C8A C7A C6A 349.1 360.0
N2 C6A C7A H6A 181.9 180.0
C8A C7A C6A H7A 203.1 180.0
C6A C7A C8A H8A 172.7 180.1
N2 C6A H6A C7A 178.1 180.0
H6A C6A C7A C8A 188.6 180.0
H6A C6A C7A H7A 345.5 0.0
N1 C8A C7A H8A 176.4 179.9
C8A C7A C6A H6A 188.6 180.0
C6A C7A C8A H7A 157.4 180.0
H7A C7A C6A H6A 345.5 0.0
C6A C7A H7A C8A 203.0 180.0
H7A C7A C8A H8A 15.3 0.1
N1 C8A H8A C7A 183.6 180.1
H8A C8A C7A H7A 15.3 0.1