PDB Chemical Component M11

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for M11

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O43 C31 1.270 1.208
C31 O42 1.282 1.343
C31 C30 1.539 1.507
C30 O29 1.466 1.451
C30 C32 1.595 1.530
O29 C13 1.446 1.343
C13 O18 1.263 1.208
C13 C12 1.506 1.507
C12 N11 1.454 1.465
C12 CAV 1.521 1.530
S17 CAV 1.836 1.815
C25 CAV 1.519 1.529
N11 C10 1.312 1.348
C10 O15 1.239 1.213
C10 C7 1.501 1.507
C7 C4 1.514 1.531
C4 C3 1.516 1.530
C3 C2 1.512 1.530
C2 N14 1.464 1.469
C2 C1 1.499 1.508
C1 O20 1.286 1.342
C1 O19 1.267 1.208
C32 C37 1.577 1.530
C32 C33 1.537 1.530
O42 H42 0.950 0.966
C30 H30 1.099 1.090
C32 H32 1.100 1.089
C12 H12 1.100 1.090
N11 H11 1.001 0.970
CAV HAV 1.100 1.090
S17 H17 1.300 1.345
C25 H251 1.100 1.090
C25 H252 1.100 1.090
C25 H253 1.100 1.090
C7 H7C1 1.100 1.090
C7 H7C2 1.100 1.090
C4 H4C1 1.100 1.090
C4 H4C2 1.100 1.090
C3 H3C1 1.100 1.090
C3 H3C2 1.101 1.090
C2 H2 1.100 1.090
N14 H141 1.000 1.009
N14 H142 1.000 1.010
O20 H20 0.950 0.967
C37 H371 1.100 1.090
C37 H372 1.100 1.090
C37 H373 1.101 1.090
C33 H331 1.100 1.089
C33 H332 1.100 1.090
C33 H333 1.100 1.090

Bond Angles for M11

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O43 C31 O42 122.6 120.0
O43 C31 C30 114.5 120.0
O42 C31 C30 122.8 120.0
C31 O42 H42 109.5 117.0
C31 C30 O29 107.7 109.5
C31 C30 C32 120.0 109.5
C31 C30 H30 103.3 109.4
O29 C30 C32 109.4 109.5
C30 O29 C13 118.5 117.0
O29 C30 H30 115.3 109.5
C30 C32 C37 122.6 109.5
C30 C32 C33 112.5 109.5
C32 C30 H30 101.3 109.5
C30 C32 H32 96.4 109.5
O29 C13 O18 121.5 120.0
O29 C13 C12 116.7 120.0
O18 C13 C12 121.8 120.0
C13 C12 N11 116.3 109.5
C13 C12 CAV 119.1 109.5
C13 C12 H12 93.6 109.5
N11 C12 CAV 84.8 109.5
C12 N11 C10 121.3 120.0
N11 C12 H12 124.2 109.4
C12 N11 H11 119.4 120.0
C12 CAV S17 110.7 109.5
C12 CAV C25 109.2 109.5
CAV C12 H12 121.7 109.5
C12 CAV HAV 115.4 109.5
S17 CAV C25 122.9 109.5
S17 CAV HAV 98.1 109.5
CAV S17 H17 109.5 103.0
C25 CAV HAV 100.0 109.5
CAV C25 H251 109.5 109.5
CAV C25 H252 109.5 109.5
CAV C25 H253 109.5 109.5
N11 C10 O15 122.3 120.0
N11 C10 C7 112.6 119.9
C10 N11 H11 119.3 120.0
O15 C10 C7 125.0 120.1
C10 C7 C4 105.3 109.4
C10 C7 H7C1 110.9 109.5
C10 C7 H7C2 111.8 109.5
C7 C4 C3 107.6 109.4
C4 C7 H7C1 110.9 109.5
C4 C7 H7C2 111.7 109.4
C7 C4 H4C1 110.1 109.5
C7 C4 H4C2 110.5 109.4
C4 C3 C2 113.1 109.4
C3 C4 H4C1 110.1 109.5
C3 C4 H4C2 110.5 109.5
C4 C3 H3C1 108.3 109.5
C4 C3 H3C2 107.4 109.5
C3 C2 N14 112.9 109.5
C3 C2 C1 104.0 109.5
C2 C3 H3C1 108.3 109.5
C2 C3 H3C2 107.4 109.5
C3 C2 H2 111.3 109.5
N14 C2 C1 110.8 109.4
N14 C2 H2 104.6 109.5
C2 N14 H141 109.5 111.1
C2 N14 H142 109.5 111.0
C2 C1 O20 118.1 120.0
C2 C1 O19 119.1 120.0
C1 C2 H2 113.5 109.4
O20 C1 O19 122.7 120.0
C1 O20 H20 109.5 117.0
C37 C32 C33 109.6 109.5
C37 C32 H32 100.5 109.5
C32 C37 H371 109.5 109.5
C32 C37 H372 109.5 109.5
C32 C37 H373 109.5 109.4
C33 C32 H32 113.8 109.4
C32 C33 H331 109.5 109.5
C32 C33 H332 109.5 109.5
C32 C33 H333 109.4 109.5
H251 C25 H252 109.4 109.5
H251 C25 H253 109.5 109.5
H252 C25 H253 109.5 109.4
H7C1 C7 H7C2 106.3 109.5
H4C1 C4 H4C2 108.0 109.5
H3C1 C3 H3C2 112.4 109.5
H141 N14 H142 109.5 111.0
H371 C37 H372 109.4 109.5
H371 C37 H373 109.5 109.5
H372 C37 H373 109.5 109.5
H331 C33 H332 109.5 109.5
H331 C33 H333 109.5 109.5
H332 C33 H333 109.5 109.4

Torsion Angles for M11

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O42 C31 O43 C30 177.8 180.3
O43 C31 O42 H42 360.0 360.0
O43 C31 C30 O29 2.9 5.0
O43 C31 C30 C32 236.9 245.0
O43 C31 C30 H30 125.3 125.1
O43 C31 O42 C30 182.4 179.7
O42 C31 C30 O29 185.1 184.7
O42 C31 C30 C32 59.1 64.7
O42 C31 C30 H30 307.4 304.7
O43 C31 C30 O42 177.8 180.3
C30 C31 O42 H42 177.6 180.3
O29 C30 C31 C32 125.9 120.0
C31 C30 O29 C13 127.0 87.0
O29 C30 C31 H30 237.6 240.0
C31 C30 C32 C37 86.9 174.2
C31 C30 C32 C33 312.8 294.2
C32 C30 C31 H30 111.7 120.0
C31 C30 C32 H32 193.7 54.1
C31 C30 O29 C32 228.0 240.0
C31 C30 O29 H30 114.7 120.0
O29 C30 C32 C37 321.7 54.2
O29 C30 C32 C33 187.6 174.2
C32 C30 O29 H30 246.7 240.0
O29 C30 C32 H32 68.5 294.1
C30 O29 C13 O18 337.9 5.4
C30 O29 C13 C12 159.3 185.4
C31 C30 C32 O29 125.1 120.0
C31 C30 C32 H30 247.3 240.1
C32 C30 O29 C13 259.0 207.0
O29 C30 C32 H30 122.1 120.0
C37 C32 C30 C33 134.1 240.0
C37 C32 C30 H32 253.2 120.0
C30 C32 C37 H371 159.4 63.7
C30 C32 C37 H372 279.4 183.8
C30 C32 C37 H373 39.4 303.8
C33 C32 C30 H32 119.1 240.0
C30 C32 C33 H331 198.7 60.0
C30 C32 C33 H332 318.7 180.1
C30 C32 C33 H333 78.7 300.0
C13 O29 C30 C32 259.0 207.0
C13 O29 C30 H30 12.4 327.0
O18 C13 O29 C12 178.6 180.0
O29 C13 C12 N11 193.4 155.1
O29 C13 C12 CAV 292.5 275.1
O29 C13 C12 H12 62.1 35.2
O29 C13 O18 C12 181.5 180.0
O18 C13 C12 N11 14.8 335.1
O18 C13 C12 CAV 114.0 95.1
O18 C13 C12 H12 243.5 215.2
O29 C13 C12 O18 178.6 180.0
N11 C12 C13 CAV 260.9 240.0
C13 C12 N11 C10 238.7 205.0
N11 C12 C13 H12 131.3 120.0
C13 C12 N11 H11 58.7 25.0
C13 C12 CAV S17 336.3 174.2
C13 C12 CAV C25 114.5 294.2
CAV C12 C13 H12 230.4 239.9
C13 C12 CAV HAV 226.1 54.2
C13 C12 N11 CAV 119.9 120.0
C13 C12 N11 H12 245.1 240.0
N11 C12 CAV S17 93.5 294.1
N11 C12 CAV C25 231.7 54.1
CAV C12 N11 H12 125.2 120.1
N11 C12 CAV HAV 343.3 174.2
C12 N11 C10 O15 5.4 360.0
C12 N11 C10 C7 183.0 180.0
C10 N11 C12 H11 180.0 180.0
C13 C12 CAV N11 242.8 240.0
C13 C12 CAV H12 115.3 120.1
CAV C12 N11 C10 118.7 85.1
N11 C12 CAV H12 232.6 240.0
CAV C12 N11 H11 298.7 265.0
S17 CAV C12 C25 221.8 240.0
S17 CAV C12 HAV 110.2 120.0
C12 CAV S17 H17 204.3 301.8
C25 CAV C12 HAV 248.4 240.0
C12 CAV C25 H251 212.7 60.0
C12 CAV C25 H252 332.6 180.0
C12 CAV C25 H253 92.6 300.0
C12 CAV S17 C25 131.5 120.0
S17 CAV C12 H12 221.0 54.1
C12 CAV S17 HAV 238.9 240.0
C25 CAV S17 HAV 107.5 120.0
S17 CAV C25 H251 344.8 180.0
S17 CAV C25 H252 104.7 300.0
S17 CAV C25 H253 224.7 60.0
C12 CAV C25 S17 227.9 240.0
C25 CAV C12 H12 359.2 174.1
C12 CAV C25 HAV 121.5 120.0
S17 CAV C25 HAV 253.5 240.0
C25 CAV S17 H17 72.9 181.8
H251 C25 CAV H252 240.0 240.0
H251 C25 CAV H253 120.0 120.0
H252 C25 CAV H253 240.0 240.0
C10 N11 C12 CAV 118.7 85.1
C10 N11 C12 H12 353.5 325.0
C12 N11 C10 H11 180.0 180.0
O15 C10 N11 C7 182.4 180.0
N11 C10 C7 C4 251.0 180.0
N11 C10 C7 H7C1 11.0 300.0
N11 C10 C7 H7C2 129.4 60.0
N11 C10 O15 C7 177.3 180.0
O15 C10 N11 H11 185.4 180.0
O15 C10 C7 C4 68.5 360.0
O15 C10 C7 H7C1 188.5 120.0
O15 C10 C7 H7C2 306.9 240.0
N11 C10 C7 O15 182.5 180.0
C7 C10 N11 H11 3.0 0.0
C10 C7 C4 C3 179.8 180.0
C4 C7 C10 H7C1 240.0 240.0
C4 C7 C10 H7C2 121.6 119.9
C10 C7 C4 H4C1 299.8 300.0
C10 C7 C4 H4C2 59.0 60.0
H7C1 C7 C10 H7C2 241.6 239.9
C10 C7 C4 H7C1 120.0 120.0
C10 C7 C4 H7C2 238.4 240.0
C7 C4 C3 C2 175.7 180.0
C3 C4 C7 H4C1 240.0 240.0
C3 C4 C7 H4C2 120.8 120.0
C7 C4 C3 H3C1 295.7 300.0
C7 C4 C3 H3C2 57.3 60.1
H7C1 C7 C4 H7C2 118.4 120.0
H4C1 C4 C7 H4C2 240.8 240.0
C3 C4 C7 H7C1 59.8 60.0
C3 C4 C7 H7C2 301.4 300.0
C7 C4 C3 H4C1 120.0 120.0
C7 C4 C3 H4C2 239.3 240.1
C4 C3 C2 N14 302.8 295.0
C4 C3 C2 C1 182.6 175.0
C2 C3 C4 H3C1 240.0 240.0
C2 C3 C4 H3C2 118.4 119.9
C4 C3 C2 H2 60.1 55.1
H4C1 C4 C3 H4C2 119.3 120.1
H3C1 C3 C4 H3C2 238.4 239.9
C2 C3 C4 H4C1 55.7 60.0
C2 C3 C4 H4C2 296.4 299.9
C4 C3 C2 H3C1 120.0 120.0
C4 C3 C2 H3C2 241.6 240.1
N14 C2 C3 C1 120.2 120.0
N14 C2 C3 H2 242.7 239.9
C3 C2 N14 H141 25.2 300.1
C3 C2 N14 H142 145.1 64.0
C3 C2 C1 O20 294.0 280.0
C3 C2 C1 O19 110.2 100.0
C1 C2 C3 H2 122.5 120.0
H3C1 C3 C2 H3C2 121.6 120.0
C3 C2 N14 C1 243.8 240.0
N14 C2 C3 H3C1 182.8 175.0
N14 C2 C3 H3C2 61.2 54.9
C3 C2 N14 H2 121.2 120.1
N14 C2 C1 O20 172.3 160.0
N14 C2 C1 O19 348.6 340.0
C1 C2 N14 H2 237.4 240.0
H141 N14 C2 H142 240.0 236.1
C3 C2 C1 N14 121.6 120.0
C1 C2 C3 H3C1 62.6 55.0
C1 C2 C3 H3C2 301.0 295.0
C3 C2 C1 H2 238.9 240.0
N14 C2 C1 H2 117.3 120.0
C1 C2 N14 H141 141.4 60.1
C1 C2 N14 H142 261.4 184.0
O20 C1 C2 O19 183.7 180.1
C2 C1 O20 H20 176.1 180.0
C2 C1 O20 O19 176.1 179.9
O20 C1 C2 H2 55.0 40.0
C2 C1 O19 O20 183.9 180.1
O19 C1 C2 H2 231.3 219.9
O19 C1 O20 H20 360.0 0.1
C30 C32 C37 C33 224.7 120.0
C37 C32 C30 H30 199.6 294.1
C30 C32 C37 H32 104.6 239.9
C33 C32 C37 H32 239.9 119.9
C37 C32 C33 H331 58.6 180.0
C37 C32 C33 H332 178.6 300.1
C37 C32 C33 H333 298.6 60.0
H371 C37 C32 H372 240.0 239.9
H371 C37 C32 H373 120.0 120.0
H372 C37 C32 H373 240.0 240.1
C30 C32 C33 C37 140.1 240.0
C33 C32 C30 H30 65.5 54.1
C30 C32 C33 H32 251.6 120.0
C37 C32 C33 H32 111.6 240.0
C33 C32 C37 H371 294.7 303.7
C33 C32 C37 H372 54.7 63.8
C33 C32 C37 H373 174.7 183.8
H331 C33 C32 H332 240.0 239.9
H331 C33 C32 H333 120.0 120.0
H332 C33 C32 H333 240.0 240.1
H42 O42 C31 C30 177.6 180.3
C31 C30 H30 O29 242.8 240.0
C31 C30 H30 C32 124.9 120.0
O29 C30 H30 C32 242.0 240.0
H30 C30 O29 C13 12.4 327.0
H30 C30 C32 C37 199.6 294.1
H30 C30 C32 C33 65.5 54.1
H30 C30 C32 H32 306.4 174.1
C30 C32 H32 C37 235.1 120.0
C30 C32 H32 C33 118.1 240.0
H32 C32 C30 H30 306.4 174.1
C37 C32 H32 C33 243.0 120.0
H32 C32 C37 H371 54.8 183.8
H32 C32 C37 H372 174.8 303.9
H32 C32 C37 H373 294.8 63.8
H32 C32 C33 H331 307.1 300.0
H32 C32 C33 H332 67.1 60.1
H32 C32 C33 H333 187.1 180.0
C13 C12 H12 N11 125.4 120.0
C13 C12 H12 CAV 232.3 240.0
N11 C12 H12 CAV 107.0 120.0
H12 C12 N11 C10 353.5 325.0
H12 C12 N11 H11 173.5 145.0
H12 C12 CAV S17 221.0 54.1
H12 C12 CAV C25 359.2 174.1
H12 C12 CAV HAV 110.8 294.2
H11 N11 C12 CAV 298.7 265.0
C12 N11 H11 C10 180.0 180.0
H11 N11 C12 H12 173.5 145.0
H11 N11 C10 O15 185.4 180.0
H11 N11 C10 C7 3.0 0.0
C12 CAV HAV S17 117.5 120.0
C12 CAV HAV C25 243.1 240.0
HAV CAV C12 H12 110.8 294.2
S17 CAV HAV C25 125.6 120.0
HAV CAV S17 H17 325.4 61.8
HAV CAV C25 H251 91.2 300.0
HAV CAV C25 H252 211.2 60.0
HAV CAV C25 H253 331.2 180.0
H17 S17 CAV C25 72.9 181.8
H17 S17 CAV HAV 325.4 61.8
H251 C25 CAV HAV 91.2 300.0
CAV C25 H251 H252 120.0 120.0
CAV C25 H251 H253 240.0 240.0
H252 C25 H251 H253 120.0 120.0
H252 C25 CAV HAV 211.2 60.0
CAV C25 H252 H251 240.0 240.0
CAV C25 H252 H253 120.0 120.0
H251 C25 H252 H253 240.0 240.0
H253 C25 CAV HAV 331.2 180.0
CAV C25 H253 H251 120.1 120.0
CAV C25 H253 H252 240.0 240.0
H251 C25 H253 H252 120.0 120.0
C10 C7 H7C1 C4 243.3 240.0
C10 C7 H7C1 H7C2 121.7 120.0
H7C1 C7 C4 C3 59.8 60.0
C4 C7 H7C1 H7C2 238.3 240.0
H7C1 C7 C4 H4C1 179.8 180.0
H7C1 C7 C4 H4C2 299.0 300.0
C10 C7 H7C2 C4 117.8 119.9
C10 C7 H7C2 H7C1 238.9 239.9
H7C2 C7 C4 C3 301.4 300.0
C4 C7 H7C2 H7C1 121.1 120.0
H7C2 C7 C4 H4C1 61.4 60.0
H7C2 C7 C4 H4C2 180.6 180.0
C7 C4 H4C1 C3 241.6 240.0
H4C1 C4 C7 H7C1 179.8 180.0
H4C1 C4 C7 H7C2 61.4 60.0
C7 C4 H4C1 H4C2 120.7 120.0
H4C1 C4 C3 C2 55.7 60.0
C3 C4 H4C1 H4C2 239.2 240.0
H4C1 C4 C3 H3C1 175.7 180.0
H4C1 C4 C3 H3C2 297.3 300.1
C7 C4 H4C2 C3 119.0 119.9
H4C2 C4 C7 H7C1 299.0 300.0
H4C2 C4 C7 H7C2 180.6 180.0
C7 C4 H4C2 H4C1 239.5 240.0
H4C2 C4 C3 C2 296.4 299.9
C3 C4 H4C2 H4C1 120.5 120.1
H4C2 C4 C3 H3C1 56.5 59.9
H4C2 C4 C3 H3C2 178.0 180.0
C4 C3 H3C1 C2 237.0 240.0
H3C1 C3 C4 H4C1 175.7 180.0
H3C1 C3 C4 H4C2 56.5 59.9
C4 C3 H3C1 H3C2 118.5 120.0
H3C1 C3 C2 N14 182.8 175.0
H3C1 C3 C2 C1 62.6 55.0
C2 C3 H3C1 H3C2 241.5 240.0
H3C1 C3 C2 H2 300.1 295.0
C4 C3 H3C2 C2 122.0 119.9
H3C2 C3 C4 H4C1 297.3 300.1
H3C2 C3 C4 H4C2 178.0 180.0
C4 C3 H3C2 H3C1 241.0 239.9
H3C2 C3 C2 N14 61.2 54.9
H3C2 C3 C2 C1 301.0 295.0
C2 C3 H3C2 H3C1 119.0 120.0
H3C2 C3 C2 H2 178.5 175.0
C3 C2 H2 N14 237.7 239.9
C3 C2 H2 C1 116.9 120.0
H2 C2 C3 H3C1 300.1 295.0
H2 C2 C3 H3C2 178.5 175.0
N14 C2 H2 C1 239.2 240.0
H2 C2 N14 H141 264.0 180.0
H2 C2 N14 H142 24.0 304.0
H2 C2 C1 O20 55.0 40.0
H2 C2 C1 O19 231.3 219.9
H141 N14 C2 C1 141.4 60.1
H141 N14 C2 H2 264.0 180.0
C2 N14 H141 H142 120.0 123.9
H142 N14 C2 C1 261.4 184.0
H142 N14 C2 H2 24.0 304.0
C2 N14 H142 H141 240.0 236.0
H20 O20 C1 O19 360.0 0.1
H371 C37 C32 C33 294.7 303.7
H371 C37 C32 H32 54.8 183.8
C32 C37 H371 H372 120.0 120.0
C32 C37 H371 H373 240.0 240.1
H372 C37 H371 H373 120.0 120.1
H372 C37 C32 C33 54.7 63.8
H372 C37 C32 H32 174.8 303.9
C32 C37 H372 H371 240.0 240.0
C32 C37 H372 H373 120.0 119.9
H371 C37 H372 H373 240.0 239.9
H373 C37 C32 C33 174.7 183.8
H373 C37 C32 H32 294.8 63.8
C32 C37 H373 H371 120.0 120.0
C32 C37 H373 H372 240.0 240.1
H371 C37 H373 H372 120.0 120.1
H331 C33 C32 H32 307.1 300.0
C32 C33 H331 H332 120.0 120.1
C32 C33 H331 H333 240.0 240.0
H332 C33 H331 H333 120.0 119.9
H332 C33 C32 H32 67.1 60.1
C32 C33 H332 H331 240.0 239.9
C32 C33 H332 H333 120.0 120.0
H331 C33 H332 H333 240.0 240.0
H333 C33 C32 H32 187.1 180.0
C32 C33 H333 H331 120.0 120.0
C32 C33 H333 H332 240.0 240.0
H331 C33 H333 H332 120.0 120.0