PDB Chemical Component M0N

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for M0N

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O C9 1.449 1.427
O HO 0.950 0.972
C9 P2 1.819 1.828
C9 C8 1.361 1.547
C9 P1 1.806 1.850
C8 C2 1.494 1.510
C8 H81 1.100 1.097
C8 H82 1.100 1.098
C2 C1 1.368 1.352
C2 N2 1.433 1.352
C1 N1 1.374 1.371
C1 H1 1.081 1.081
N1 C7 1.369 1.317
C7 N2 1.417 1.393
C7 C6 1.394 1.425
C6 C5 1.365 1.347
C6 H6 1.080 1.085
C5 C4 1.397 1.454
C5 H5 1.080 1.085
C4 C3 1.379 1.343
C4 H4 1.080 1.082
C3 N2 1.395 1.392
C3 H3 1.080 1.083
P1 O3 1.547 1.501
P1 O1 1.543 1.616
P1 O2 1.480 1.617
O2 HO2 0.950 0.982
O1 HO1 0.950 0.980
P2 O6 1.578 1.499
P2 O5 1.497 1.617
P2 O4 1.518 1.616
O5 HO5 0.950 0.981
O4 HO4 0.950 0.981

Bond Angles for M0N

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C9 O HO 109.5 107.4
O C9 P2 107.6 103.4
O C9 C8 118.1 109.1
O C9 P1 102.6 102.6
C8 C9 P2 105.9 113.4
P1 C9 P2 115.8 119.6
C9 P2 O6 102.8 115.7
C9 P2 O5 113.5 103.4
C9 P2 O4 109.0 103.1
C8 C9 P1 107.2 107.7
C9 C8 C2 128.2 115.3
C9 C8 H81 103.6 108.4
C9 C8 H82 99.3 109.6
C9 P1 O3 102.7 113.7
C9 P1 O1 104.8 103.9
C9 P1 O2 116.9 104.2
C2 C8 H81 103.7 109.5
C2 C8 H82 99.2 107.8
C8 C2 C1 129.1 129.7
C8 C2 N2 125.2 122.6
H81 C8 H82 125.7 105.9
C1 C2 N2 105.8 107.7
C2 C1 N1 110.5 110.2
C2 C1 H1 124.7 128.6
C2 N2 C7 107.6 105.6
C2 N2 C3 133.6 130.8
N1 C1 H1 124.7 121.2
C1 N1 C7 109.0 105.3
N1 C7 N2 107.1 111.2
N1 C7 C6 131.4 131.7
C6 C7 N2 121.5 117.0
C7 N2 C3 118.8 123.6
C7 C6 C5 117.8 119.7
C7 C6 H6 121.1 119.4
C5 C6 H6 121.1 120.9
C6 C5 C4 122.1 121.6
C6 C5 H5 118.9 120.7
C4 C5 H5 118.9 117.7
C5 C4 C3 120.2 119.1
C5 C4 H4 119.9 119.1
C3 C4 H4 119.9 121.9
C4 C3 N2 119.6 119.1
C4 C3 H3 120.2 122.5
N2 C3 H3 120.2 118.5
O3 P1 O1 104.7 115.1
O2 P1 O3 107.7 115.3
O2 P1 O1 118.3 103.2
P1 O1 HO1 109.5 119.0
P1 O2 HO2 109.5 118.9
O5 P2 O6 109.0 114.5
O6 P2 O4 107.4 115.5
O5 P2 O4 114.3 103.0
P2 O5 HO5 109.5 119.0
P2 O4 HO4 109.5 118.9

Torsion Angles for M0N

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C8 C9 O P2 119.7 239.0
P1 C9 O P2 237.3 125.0
O C9 P2 O6 94.9 302.0
O C9 P2 O5 337.3 68.0
O C9 P2 O4 208.6 175.0
C8 C9 O P1 242.4 114.0
O C9 C8 C2 61.2 60.0
O C9 C8 H81 181.2 183.1
O C9 C8 H82 311.6 298.2
O C9 P1 O3 147.4 175.1
O C9 P1 O1 38.2 301.0
O C9 P1 O2 265.1 48.7
HO O C9 P2 162.4 298.7
HO O C9 C8 282.1 177.7
HO O C9 P1 39.7 63.7
P2 C9 O HO 162.4 298.7
O C9 P2 C8 127.2 242.0
O C9 P2 P1 245.9 113.1
C8 C9 P2 P1 118.7 231.2
P2 C9 C8 C2 181.8 305.3
P2 C9 C8 H81 301.8 68.5
P2 C9 C8 H82 72.2 183.6
P2 C9 P1 O3 30.5 288.6
P2 C9 P1 O1 281.3 54.5
P2 C9 P1 O2 148.2 162.3
O5 P2 C9 O6 242.4 126.0
O6 P2 C9 O4 246.3 127.0
O5 P2 C9 O4 128.7 253.0
C9 P2 O5 HO5 345.4 181.8
C9 P2 O4 HO4 191.4 178.0
C8 C9 O HO 282.1 177.7
O C9 C8 P2 239.4 114.6
O C9 C8 P1 115.2 249.3
P1 C9 C8 P2 124.3 225.3
C8 C9 P2 O6 327.7 60.0
C8 C9 P2 O5 210.1 186.0
C8 C9 P2 O4 81.4 293.0
C8 C9 P1 O3 272.5 60.0
C8 C9 P1 O1 163.3 185.9
C8 C9 P1 O2 30.2 293.7
C2 C8 C9 H81 240.0 236.9
C2 C8 C9 H82 109.6 121.8
C9 C8 C2 C1 308.2 90.1
C9 C8 C2 N2 128.5 270.0
H81 C8 C9 H82 229.6 244.9
P1 C9 O HO 39.7 63.7
O C9 P1 P2 116.9 246.5
O C9 P1 C8 234.9 115.1
C8 C9 P1 P2 242.0 131.4
P1 C9 P2 O6 209.0 188.9
P1 C9 P2 O5 91.4 314.8
P1 C9 P2 O4 322.7 61.9
P1 C9 C8 C2 306.0 170.6
P1 C9 C8 H81 66.0 293.8
P1 C9 C8 H82 196.4 48.9
O3 P1 C9 O1 109.2 234.1
O2 P1 C9 O3 117.7 233.7
O2 P1 C9 O1 226.9 107.8
C9 P1 O1 HO1 219.7 183.0
C9 P1 O2 HO2 4.2 177.2
C2 C8 C9 P2 181.8 305.3
C2 C8 C9 P1 306.0 170.6
C9 C8 C2 H81 120.0 122.6
C9 C8 C2 H82 250.4 237.3
H81 C8 C2 H82 130.4 114.7
C1 C2 C8 N2 179.7 180.1
C8 C2 C1 N1 180.1 180.0
C8 C2 C1 H1 0.0 359.9
C8 C2 N2 C7 180.0 180.0
C8 C2 N2 C3 359.4 360.0
H81 C8 C9 P2 301.8 68.5
H81 C8 C9 P1 66.0 293.8
C9 C8 H81 C2 224.4 233.4
C9 C8 H81 H82 112.2 117.5
C2 C8 H81 H82 247.8 244.1
H81 C8 C2 C1 188.2 327.5
H81 C8 C2 N2 8.5 147.5
H82 C8 C9 P2 72.2 183.6
H82 C8 C9 P1 196.4 48.9
C9 C8 H82 C2 131.4 126.2
C9 C8 H82 H81 245.7 243.3
C2 C8 H82 H81 114.3 117.1
H82 C8 C2 C1 57.8 212.8
H82 C8 C2 N2 238.1 32.7
C1 C2 C8 H81 188.2 327.5
C1 C2 C8 H82 57.8 212.8
C8 C2 C1 N2 180.3 179.9
C1 C2 N2 C7 0.2 360.0
C1 C2 N2 C3 179.7 179.9
N1 C1 C2 H1 180.0 180.1
C2 C1 N1 C7 0.1 360.0
N2 C2 C8 H81 8.5 147.5
N2 C2 C8 H82 238.1 32.7
C8 C2 N2 C1 179.8 180.0
N2 C2 C1 N1 359.8 0.0
N2 C2 C1 H1 179.8 179.9
N1 C7 N2 C2 359.8 0.0
C6 C7 N2 C2 179.6 180.0
C7 N2 C2 C3 180.5 180.1
C4 C3 N2 C2 179.6 180.0
C2 N2 C3 H3 359.6 0.1
N1 C1 C2 N2 359.8 0.0
C2 C1 N1 H1 180.0 179.9
C1 N1 C7 N2 0.0 0.0
C1 N1 C7 C6 180.3 180.0
H1 C1 C2 N2 179.8 179.9
C2 C1 H1 N1 180.0 180.1
H1 C1 N1 C7 180.1 180.1
C2 N2 C7 N1 359.8 0.0
C7 N1 C1 H1 180.1 180.1
C6 C7 N1 N2 180.3 180.0
N1 C7 N2 C3 180.3 180.1
N1 C7 C6 C5 180.2 180.0
N1 C7 C6 H6 0.2 360.0
C2 N2 C7 C3 179.6 180.0
N1 C7 N2 C6 180.2 180.0
N2 C7 C6 C5 0.5 360.0
N2 C7 C6 H6 180.5 180.0
C4 C3 N2 C7 359.0 360.0
C7 N2 C3 H3 179.0 180.0
C2 N2 C7 C6 179.6 180.0
N1 C7 C6 N2 179.7 180.0
C6 C7 N2 C3 0.1 0.0
C5 C6 C7 H6 180.0 180.0
C7 C6 C5 C4 359.9 0.0
C7 C6 C5 H5 180.0 180.0
C5 C6 C7 N2 0.5 360.0
C7 C6 C5 H6 180.0 180.0
C4 C5 C6 H5 180.0 180.0
C6 C5 C4 C3 359.1 360.0
C6 C5 C4 H4 179.0 180.0
H6 C6 C7 N2 180.5 180.0
C7 C6 H6 C5 180.0 180.0
H6 C6 C5 C4 179.9 180.0
H6 C6 C5 H5 359.9 360.0
C4 C5 C6 H6 179.9 180.0
C6 C5 C4 H5 180.0 180.0
C3 C4 C5 H4 180.0 180.0
C5 C4 C3 N2 1.5 0.0
C5 C4 C3 H3 181.5 180.0
H5 C5 C6 H6 359.9 360.0
C6 C5 H5 C4 180.0 180.0
H5 C5 C4 C3 179.1 180.0
H5 C5 C4 H4 359.0 360.0
C2 N2 C3 C4 179.6 180.0
C7 N2 C3 C4 359.0 360.0
C3 C4 C5 H5 179.1 180.0
C5 C4 C3 H4 180.0 180.0
N2 C3 C4 H3 180.0 180.0
H4 C4 C5 H5 359.0 360.0
C5 C4 H4 C3 180.0 180.0
H4 C4 C3 N2 181.5 180.0
H4 C4 C3 H3 1.5 360.0
C2 N2 C3 C7 180.6 180.1
N2 C3 C4 H4 181.5 180.0
C4 C3 N2 H3 180.0 180.0
H3 C3 C4 H4 1.5 360.0
C4 C3 H3 N2 180.0 180.0
O3 P1 C9 P2 30.5 288.6
C9 P1 O3 O1 250.7 119.7
C9 P1 O3 O2 123.9 239.8
O2 P1 O3 O1 126.8 239.9
O3 P1 O1 HO1 112.0 308.0
O3 P1 O2 HO2 119.1 51.9
O1 P1 C9 P2 281.3 54.5
C9 P1 O1 O3 107.7 235.0
C9 P1 O1 O2 227.7 108.5
O2 P1 O1 O3 240.1 126.5
O1 P1 O2 HO2 237.4 285.5
O2 P1 C9 P2 148.2 162.3
C9 P1 O2 O3 245.1 125.3
C9 P1 O2 O1 126.8 251.7
O3 P1 O2 O1 241.7 126.4
O2 P1 O1 HO1 352.0 74.5
HO2 O2 P1 O3 119.1 51.9
HO2 O2 P1 O1 237.4 285.5
C9 P2 O6 O5 239.3 120.2
C9 P2 O6 O4 114.9 239.5
O5 P2 O6 O4 235.6 119.3
O6 P2 O5 HO5 231.5 308.6
O6 P2 O4 HO4 302.0 50.9
C9 P2 O5 O6 113.9 233.2
C9 P2 O5 O4 234.1 107.1
O6 P2 O5 O4 120.2 233.9
O5 P2 O4 HO4 63.1 285.4
C9 P2 O4 O6 249.3 127.2
C9 P2 O4 O5 128.2 252.6
O5 P2 O4 O6 121.1 234.5
O4 P2 O5 HO5 111.3 74.7
HO5 O5 P2 O6 231.5 308.6
HO5 O5 P2 O4 111.3 74.7