PDB Chemical Component M08
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for M08
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O3 |
C3 |
1.434 |
1.429 |
| O4 |
C4 |
1.431 |
1.429 |
| C3 |
C4 |
1.535 |
1.532 |
| C3 |
C2 |
1.544 |
1.534 |
| C4 |
C5 |
1.544 |
1.531 |
| O2 |
C2 |
1.439 |
1.429 |
| C2 |
C1 |
1.548 |
1.523 |
| O6 |
C6 |
1.432 |
1.430 |
| C5 |
C6 |
1.534 |
1.529 |
| C5 |
O5 |
1.450 |
1.430 |
| C1 |
O5 |
1.452 |
1.420 |
| C1 |
O7 |
1.436 |
1.436 |
| C1 |
C7 |
1.526 |
1.541 |
| O7 |
N1 |
1.427 |
1.416 |
| C7 |
C8 |
1.523 |
1.519 |
| N1 |
C8 |
1.332 |
1.291 |
| C8 |
C9 |
1.397 |
1.476 |
| C10 |
C9 |
1.397 |
1.396 |
| C10 |
C11 |
1.400 |
1.379 |
| C9 |
C14 |
1.397 |
1.396 |
| C11 |
C12 |
1.393 |
1.384 |
| C14 |
C13 |
1.398 |
1.380 |
| C12 |
C13 |
1.397 |
1.384 |
| C10 |
H10 |
1.080 |
1.081 |
| C11 |
H11 |
1.080 |
1.080 |
| C12 |
H12 |
1.081 |
1.080 |
| C13 |
H13 |
1.080 |
1.080 |
| C14 |
H14 |
1.080 |
1.080 |
| C7 |
H71 |
1.100 |
1.089 |
| C7 |
H72 |
1.100 |
1.090 |
| C5 |
H5 |
1.100 |
1.090 |
| C6 |
H61 |
1.100 |
1.090 |
| C6 |
H62 |
1.100 |
1.090 |
| O6 |
HO6 |
0.950 |
0.967 |
| C4 |
H4 |
1.100 |
1.090 |
| O4 |
HO4 |
0.950 |
0.967 |
| C3 |
H3 |
1.100 |
1.090 |
| O3 |
HO3 |
0.950 |
0.967 |
| C2 |
H2 |
1.100 |
1.090 |
| O2 |
HO2 |
0.950 |
0.967 |
Bond Angles for M08
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O3 |
C3 |
C2 |
110.6 |
109.5 |
| O3 |
C3 |
H3 |
109.5 |
109.6 |
| O4 |
C4 |
H4 |
109.3 |
109.5 |
| C3 |
C4 |
H4 |
108.4 |
109.5 |
| C2 |
C3 |
H3 |
107.8 |
109.5 |
| C3 |
C2 |
H2 |
108.1 |
109.5 |
| C4 |
C5 |
H5 |
106.7 |
109.5 |
| O2 |
C2 |
H2 |
108.4 |
109.5 |
| O6 |
C6 |
H61 |
109.7 |
109.5 |
| O6 |
C6 |
H62 |
109.9 |
109.4 |
| C6 |
C5 |
H5 |
107.8 |
109.5 |
| C5 |
C6 |
H61 |
109.7 |
109.5 |
| C5 |
C6 |
H62 |
109.8 |
109.5 |
| C1 |
C7 |
H71 |
111.6 |
110.9 |
| C1 |
C7 |
H72 |
113.0 |
111.0 |
| C11 |
C10 |
C9 |
120.1 |
119.9 |
| C10 |
C9 |
C14 |
120.0 |
119.6 |
| C9 |
C10 |
H10 |
120.0 |
120.0 |
| C10 |
C11 |
C12 |
119.8 |
120.1 |
| C11 |
C10 |
H10 |
120.0 |
120.1 |
| C10 |
C11 |
H11 |
120.1 |
119.9 |
| C9 |
C14 |
H14 |
120.0 |
120.0 |
| C11 |
C12 |
C13 |
120.3 |
120.3 |
| C12 |
C11 |
H11 |
120.1 |
119.9 |
| C11 |
C12 |
H12 |
119.8 |
119.9 |
| C14 |
C13 |
H13 |
120.1 |
119.9 |
| C13 |
C12 |
H12 |
119.8 |
119.8 |
| C12 |
C13 |
H13 |
120.0 |
120.0 |
| H71 |
C7 |
H72 |
104.7 |
110.8 |
| H61 |
C6 |
H62 |
108.9 |
109.5 |
Torsion Angles for M08
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O3 |
C3 |
C4 |
H4 |
56.5 |
57.4 |
| C2 |
C3 |
O3 |
H3 |
241.4 |
239.8 |
| O3 |
C3 |
C2 |
H2 |
307.7 |
304.3 |
| C3 |
C4 |
O4 |
H4 |
118.7 |
120.1 |
| O4 |
C4 |
C5 |
H5 |
301.9 |
301.8 |
| O4 |
C4 |
C3 |
H4 |
240.7 |
239.9 |
| C3 |
C4 |
C5 |
H5 |
64.0 |
61.8 |
| O3 |
C3 |
C2 |
H3 |
119.6 |
120.3 |
| C2 |
C3 |
C4 |
H4 |
294.8 |
297.6 |
| O2 |
C2 |
C3 |
H2 |
118.5 |
120.1 |
| C6 |
C5 |
C4 |
H5 |
118.6 |
120.0 |
| C4 |
C5 |
C6 |
H61 |
289.8 |
304.9 |
| C4 |
C5 |
C6 |
H62 |
170.0 |
64.9 |
| O2 |
C2 |
C3 |
H3 |
306.6 |
304.1 |
| C3 |
C2 |
O2 |
H2 |
241.7 |
239.9 |
| C2 |
C1 |
C7 |
H71 |
255.5 |
336.1 |
| C2 |
C1 |
C7 |
H72 |
13.1 |
212.6 |
| O6 |
C6 |
C5 |
H5 |
167.7 |
304.9 |
| C5 |
C6 |
O6 |
H61 |
240.0 |
120.1 |
| C5 |
C6 |
O6 |
H62 |
120.3 |
240.0 |
| H61 |
C6 |
O6 |
H62 |
240.3 |
120.0 |
| C4 |
C5 |
C6 |
H5 |
242.0 |
239.9 |
| O6 |
C6 |
C5 |
H61 |
120.0 |
240.0 |
| O6 |
C6 |
C5 |
H62 |
239.7 |
119.9 |
| H61 |
C6 |
C5 |
H62 |
119.7 |
240.0 |
| O5 |
C1 |
C7 |
H71 |
18.0 |
99.7 |
| O5 |
C1 |
C7 |
H72 |
135.7 |
336.2 |
| O7 |
C1 |
C7 |
H71 |
136.0 |
218.2 |
| O7 |
C1 |
C7 |
H72 |
253.7 |
94.6 |
| H71 |
C7 |
C1 |
H72 |
242.3 |
123.5 |
| C8 |
C9 |
C10 |
H10 |
359.5 |
0.3 |
| C8 |
C9 |
C14 |
H14 |
0.6 |
360.0 |
| C9 |
C10 |
C11 |
C12 |
359.8 |
360.0 |
| C11 |
C10 |
C9 |
H10 |
180.0 |
179.8 |
| C9 |
C10 |
C11 |
H11 |
179.8 |
180.0 |
| C10 |
C9 |
C14 |
H14 |
179.8 |
180.0 |
| C11 |
C10 |
C9 |
C14 |
0.4 |
360.0 |
| C9 |
C10 |
C11 |
H10 |
180.0 |
180.2 |
| C10 |
C11 |
C12 |
C13 |
359.9 |
0.1 |
| C12 |
C11 |
C10 |
H11 |
180.0 |
179.9 |
| C10 |
C11 |
C12 |
H12 |
179.9 |
180.0 |
| C14 |
C9 |
C10 |
H10 |
180.4 |
180.2 |
| C9 |
C14 |
C13 |
H13 |
179.9 |
180.0 |
| C12 |
C11 |
C10 |
C9 |
359.8 |
360.0 |
| C12 |
C11 |
C10 |
H10 |
179.8 |
179.7 |
| C10 |
C11 |
C12 |
H11 |
180.0 |
180.1 |
| C13 |
C12 |
C11 |
H12 |
180.0 |
180.1 |
| C11 |
C12 |
C13 |
H13 |
180.3 |
179.9 |
| C10 |
C9 |
C14 |
C13 |
359.8 |
0.0 |
| C14 |
C13 |
C12 |
H12 |
180.3 |
180.0 |
| C12 |
C13 |
C14 |
H13 |
180.0 |
180.0 |
| C13 |
C12 |
C11 |
H11 |
179.9 |
180.0 |
| C11 |
C12 |
C13 |
H12 |
180.0 |
179.9 |
| C14 |
C13 |
C12 |
H13 |
180.0 |
180.0 |
| C11 |
C10 |
H10 |
C9 |
180.0 |
180.2 |
| H10 |
C10 |
C9 |
C14 |
180.4 |
180.2 |
| H10 |
C10 |
C11 |
C12 |
179.8 |
179.7 |
| H10 |
C10 |
C11 |
H11 |
359.7 |
359.8 |
| H11 |
C11 |
C10 |
C9 |
179.8 |
180.0 |
| C10 |
C11 |
H11 |
C12 |
180.0 |
179.9 |
| H11 |
C11 |
C10 |
H10 |
359.7 |
359.8 |
| H11 |
C11 |
C12 |
C13 |
179.9 |
180.0 |
| H11 |
C11 |
C12 |
H12 |
359.9 |
359.9 |
| C11 |
C12 |
H12 |
C13 |
180.0 |
180.1 |
| H12 |
C12 |
C11 |
H11 |
359.9 |
359.9 |
| H12 |
C12 |
C13 |
H13 |
0.3 |
0.0 |
| H13 |
C13 |
C12 |
H12 |
0.3 |
0.0 |
| H14 |
C14 |
C13 |
H13 |
359.9 |
0.0 |
| C1 |
C7 |
H71 |
H72 |
122.6 |
236.3 |
| C1 |
C7 |
H72 |
H71 |
238.3 |
123.6 |
| H5 |
C5 |
C6 |
H61 |
47.7 |
65.0 |
| H5 |
C5 |
C6 |
H62 |
288.0 |
185.0 |
| O6 |
C6 |
H61 |
H62 |
120.3 |
240.1 |
| H61 |
C6 |
C5 |
H5 |
47.7 |
65.0 |
| C5 |
C6 |
H61 |
H62 |
239.7 |
120.0 |
| O6 |
C6 |
H62 |
H61 |
239.8 |
120.0 |
| H62 |
C6 |
C5 |
H5 |
288.0 |
185.0 |
| C5 |
C6 |
H62 |
H61 |
120.2 |
239.9 |
| HO6 |
O6 |
C6 |
H61 |
40.8 |
59.9 |
| HO6 |
O6 |
C6 |
H62 |
160.5 |
300.0 |
| H4 |
C4 |
C5 |
H5 |
182.6 |
181.8 |
| HO4 |
O4 |
C4 |
H4 |
133.1 |
60.1 |
| O3 |
C3 |
H3 |
C2 |
239.6 |
239.8 |
| H3 |
C3 |
C4 |
H4 |
176.1 |
177.8 |
| H3 |
C3 |
C2 |
H2 |
188.1 |
184.0 |
| HO3 |
O3 |
C3 |
C2 |
204.3 |
179.4 |
| HO3 |
O3 |
C3 |
H3 |
322.9 |
299.7 |
| H2 |
C2 |
C3 |
H3 |
188.1 |
184.0 |
| HO2 |
O2 |
C2 |
H2 |
243.7 |
60.0 |