PDB Chemical Component M07
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for M07
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O3 |
C3 |
1.434 |
1.429 |
O4 |
C4 |
1.435 |
1.428 |
C3 |
C4 |
1.535 |
1.532 |
C3 |
C2 |
1.542 |
1.533 |
C4 |
C5 |
1.545 |
1.531 |
O2 |
C2 |
1.434 |
1.429 |
C2 |
C1 |
1.546 |
1.522 |
O6 |
C6 |
1.436 |
1.429 |
C5 |
C6 |
1.535 |
1.530 |
C5 |
O5 |
1.453 |
1.431 |
C1 |
O5 |
1.444 |
1.420 |
C1 |
O7 |
1.436 |
1.436 |
C1 |
C7 |
1.532 |
1.541 |
O7 |
N1 |
1.428 |
1.416 |
C7 |
C8 |
1.528 |
1.518 |
N1 |
C8 |
1.331 |
1.293 |
C8 |
C9 |
1.403 |
1.474 |
C10 |
C9 |
1.395 |
1.398 |
C10 |
C11 |
1.399 |
1.378 |
C9 |
C14 |
1.399 |
1.397 |
C11 |
C12 |
1.394 |
1.389 |
C14 |
C13 |
1.399 |
1.378 |
C12 |
C13 |
1.404 |
1.390 |
C12 |
O8 |
1.372 |
1.358 |
O8 |
C15 |
1.439 |
1.429 |
C15 |
H151 |
1.101 |
1.090 |
C15 |
H152 |
1.100 |
1.091 |
C15 |
H153 |
1.100 |
1.090 |
C11 |
H11 |
1.080 |
1.080 |
C10 |
H10 |
1.080 |
1.080 |
C13 |
H13 |
1.081 |
1.080 |
C14 |
H14 |
1.080 |
1.081 |
C7 |
H71 |
1.100 |
1.090 |
C7 |
H72 |
1.100 |
1.090 |
C5 |
H5 |
1.100 |
1.089 |
C6 |
H61 |
1.100 |
1.090 |
C6 |
H62 |
1.100 |
1.090 |
O6 |
HO6 |
0.950 |
0.967 |
C4 |
H4 |
1.100 |
1.091 |
O4 |
HO4 |
0.950 |
0.967 |
C3 |
H3 |
1.100 |
1.091 |
O3 |
HO3 |
0.950 |
0.967 |
C2 |
H2 |
1.100 |
1.090 |
O2 |
HO2 |
0.950 |
0.967 |
Bond Angles for M07
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O3 |
C3 |
C2 |
109.3 |
109.6 |
O3 |
C3 |
H3 |
109.7 |
109.6 |
O4 |
C4 |
H4 |
109.0 |
109.6 |
C3 |
C4 |
H4 |
108.0 |
109.4 |
C2 |
C3 |
H3 |
108.7 |
109.6 |
C3 |
C2 |
H2 |
107.9 |
109.4 |
C4 |
C5 |
H5 |
105.9 |
109.5 |
O2 |
C2 |
H2 |
109.6 |
109.5 |
O6 |
C6 |
H61 |
109.5 |
109.5 |
O6 |
C6 |
H62 |
109.5 |
109.5 |
C6 |
C5 |
H5 |
108.5 |
109.5 |
C5 |
C6 |
H61 |
109.5 |
109.5 |
C5 |
C6 |
H62 |
109.5 |
109.5 |
C1 |
C7 |
H71 |
111.5 |
110.8 |
C1 |
C7 |
H72 |
112.8 |
111.0 |
C10 |
C9 |
C14 |
119.5 |
119.8 |
C9 |
C10 |
H10 |
119.9 |
120.0 |
C10 |
C11 |
H11 |
119.7 |
120.0 |
C9 |
C14 |
H14 |
119.9 |
120.0 |
C11 |
C12 |
C13 |
119.2 |
120.2 |
C14 |
C13 |
H13 |
119.9 |
120.0 |
C12 |
C13 |
H13 |
119.9 |
120.0 |
O8 |
C15 |
H151 |
109.5 |
109.4 |
O8 |
C15 |
H152 |
109.4 |
109.5 |
O8 |
C15 |
H153 |
109.5 |
109.5 |
H151 |
C15 |
H152 |
109.4 |
109.5 |
H151 |
C15 |
H153 |
109.5 |
109.5 |
H152 |
C15 |
H153 |
109.5 |
109.5 |
H71 |
C7 |
H72 |
105.0 |
110.7 |
H61 |
C6 |
H62 |
109.4 |
109.5 |
Torsion Angles for M07
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O3 |
C3 |
C4 |
H4 |
53.3 |
57.6 |
C2 |
C3 |
O3 |
H3 |
240.8 |
239.7 |
O3 |
C3 |
C2 |
H2 |
306.7 |
304.3 |
C3 |
C4 |
O4 |
H4 |
118.4 |
120.1 |
O4 |
C4 |
C5 |
H5 |
303.0 |
301.8 |
O4 |
C4 |
C3 |
H4 |
241.0 |
239.8 |
C3 |
C4 |
C5 |
H5 |
65.6 |
61.8 |
O3 |
C3 |
C2 |
H3 |
119.8 |
120.3 |
C2 |
C3 |
C4 |
H4 |
292.1 |
297.7 |
O2 |
C2 |
C3 |
H2 |
119.3 |
120.1 |
C6 |
C5 |
C4 |
H5 |
118.8 |
120.1 |
C4 |
C5 |
C6 |
H61 |
290.8 |
304.9 |
C4 |
C5 |
C6 |
H62 |
170.8 |
64.9 |
O2 |
C2 |
C3 |
H3 |
306.2 |
304.0 |
C3 |
C2 |
O2 |
H2 |
241.8 |
240.0 |
C2 |
C1 |
C7 |
H71 |
254.8 |
336.1 |
C2 |
C1 |
C7 |
H72 |
12.6 |
212.7 |
O6 |
C6 |
C5 |
H5 |
168.1 |
305.0 |
C5 |
C6 |
O6 |
H61 |
240.0 |
120.0 |
C5 |
C6 |
O6 |
H62 |
120.0 |
240.0 |
H61 |
C6 |
O6 |
H62 |
240.0 |
120.0 |
C4 |
C5 |
C6 |
H5 |
242.7 |
239.9 |
O6 |
C6 |
C5 |
H61 |
120.0 |
240.0 |
O6 |
C6 |
C5 |
H62 |
240.0 |
120.0 |
H61 |
C6 |
C5 |
H62 |
120.0 |
240.0 |
O5 |
C1 |
C7 |
H71 |
16.5 |
99.8 |
O5 |
C1 |
C7 |
H72 |
134.4 |
336.3 |
O7 |
C1 |
C7 |
H71 |
134.8 |
218.1 |
O7 |
C1 |
C7 |
H72 |
252.7 |
94.7 |
H71 |
C7 |
C1 |
H72 |
242.2 |
123.4 |
C8 |
C9 |
C10 |
H10 |
358.9 |
0.0 |
C8 |
C9 |
C14 |
H14 |
1.4 |
0.3 |
C9 |
C10 |
C11 |
H11 |
179.6 |
180.0 |
C10 |
C9 |
C14 |
H14 |
179.5 |
180.1 |
C10 |
C11 |
C12 |
C13 |
0.0 |
0.1 |
C14 |
C9 |
C10 |
H10 |
180.7 |
180.2 |
C9 |
C14 |
C13 |
H13 |
180.0 |
180.4 |
C11 |
C12 |
C13 |
H13 |
180.2 |
179.7 |
C10 |
C9 |
C14 |
C13 |
359.5 |
359.6 |
C12 |
C13 |
C14 |
H13 |
180.0 |
180.0 |
C14 |
C13 |
C12 |
H13 |
180.0 |
180.0 |
C12 |
O8 |
C15 |
H151 |
167.0 |
60.0 |
C12 |
O8 |
C15 |
H152 |
286.9 |
180.0 |
C12 |
O8 |
C15 |
H153 |
46.9 |
300.0 |
H151 |
C15 |
O8 |
H152 |
240.0 |
240.0 |
H151 |
C15 |
O8 |
H153 |
120.0 |
120.0 |
H152 |
C15 |
O8 |
H153 |
240.0 |
240.0 |
O8 |
C15 |
H151 |
H152 |
120.0 |
120.0 |
O8 |
C15 |
H151 |
H153 |
240.0 |
240.0 |
H152 |
C15 |
H151 |
H153 |
120.0 |
120.0 |
O8 |
C15 |
H152 |
H151 |
240.0 |
240.0 |
O8 |
C15 |
H152 |
H153 |
120.0 |
120.1 |
H151 |
C15 |
H152 |
H153 |
240.0 |
240.0 |
O8 |
C15 |
H153 |
H151 |
120.0 |
120.0 |
O8 |
C15 |
H153 |
H152 |
240.0 |
240.0 |
H151 |
C15 |
H153 |
H152 |
120.0 |
120.0 |
H11 |
C11 |
C12 |
C13 |
180.0 |
180.0 |
H10 |
C10 |
C9 |
C14 |
180.7 |
180.2 |
H10 |
C10 |
C11 |
H11 |
359.5 |
0.0 |
H14 |
C14 |
C13 |
H13 |
0.0 |
360.0 |
C1 |
C7 |
H71 |
H72 |
122.4 |
236.4 |
C1 |
C7 |
H72 |
H71 |
238.4 |
123.5 |
H5 |
C5 |
C6 |
H61 |
48.1 |
65.0 |
H5 |
C5 |
C6 |
H62 |
288.1 |
184.9 |
O6 |
C6 |
H61 |
H62 |
120.0 |
240.0 |
H61 |
C6 |
C5 |
H5 |
48.1 |
65.0 |
C5 |
C6 |
H61 |
H62 |
239.9 |
120.0 |
O6 |
C6 |
H62 |
H61 |
240.0 |
120.0 |
H62 |
C6 |
C5 |
H5 |
288.1 |
184.9 |
C5 |
C6 |
H62 |
H61 |
120.1 |
240.0 |
HO6 |
O6 |
C6 |
H61 |
41.6 |
60.0 |
HO6 |
O6 |
C6 |
H62 |
161.5 |
300.0 |
H4 |
C4 |
C5 |
H5 |
184.0 |
181.7 |
HO4 |
O4 |
C4 |
H4 |
133.1 |
60.0 |
O3 |
C3 |
H3 |
C2 |
240.5 |
239.7 |
H3 |
C3 |
C4 |
H4 |
173.0 |
177.8 |
H3 |
C3 |
C2 |
H2 |
186.9 |
184.0 |
HO3 |
O3 |
C3 |
C2 |
204.7 |
179.5 |
HO3 |
O3 |
C3 |
H3 |
323.9 |
299.8 |
H2 |
C2 |
C3 |
H3 |
186.9 |
184.0 |
HO2 |
O2 |
C2 |
H2 |
243.4 |
60.0 |