Atom Nomenclature for LZZ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for LZZ

Atom Name (V3) Atom Name (V2)
CAR CAR
CAQ CAQ
CAS CAS
CAT CAT
CAU CAU
CAV CAV
CAW CAW
CAA CAA
CAB CAB
CAC CAC
OAD OAD
CAE CAE
CAF CAF
CAG CAG
CAH CAH
CAI CAI
CAJ CAJ
CAK CAK
CAL CAL
CAM CAM
OAX OAX
CAN CAN
OAO OAO
CAP CAP
HAU HAU
HAV HAV
HAT HAT
HAX HAX
HAW HAW
HAY HAY
HAZ HAZ
HA0 HA0
HA2 HA2
HA3 HA3
HA1 HA1
HAB HAB
HAA HAA
HAC HAC
HAD HAD
HAE HAE
HA4 HA4
HAG HAG
HAF HAF
HAH HAH
HAI HAI
HAJ HAJ
HAK HAK
HAL HAL
HAN HAN
HAM HAM
HAO HAO
HAP HAP
HA5 HA5
HAR HAR
HAQ HAQ
HAS HAS