Atom Nomenclature for LZG

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for LZG

Atom Name (V3) Atom Name (V2)
CL1 CL1
C10 C10
C19 C19
C13 C13
S3 S3
C2 C2
C5 C5
O24 O24
N7 N7
C6 C6
C12 C12
F32 F32
C20 C20
C18 C18
N4 N4
C22 C22
C14 C14
O27 O27
N15 N15
C16 C16
C17 C17
F33 F33
C28 C28
C26 C26
C9 C9
C11 C11
N1 N1
C8 C8
O25 O25
C23 C23
C30 C30
C29 C29
C21 C21
H19 H19
H13 H13
H7 H7
H6 H6
H12 H12
H181 1H18
H182 2H18
H201 1H20
H202 2H20
H221 1H22
H222 2H22
H15 H15
H28 H28
H11 H11
H26 H26
H21 H21
H23 H23
H30 H30
H29 H29