Atom Nomenclature for LZF

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for LZF

Atom Name (V3) Atom Name (V2)
F32 F32
C17 C17
C11 C11
C9 C9
N1 N1
C21 C21
C29 C29
C30 C30
C23 C23
C8 C8
O25 O25
C26 C26
C28 C28
C16 C16
N15 N15
C14 C14
O27 O27
C22 C22
N4 N4
C20 C20
C13 C13
O33 O33
C34 C34
C18 C18
C6 C6
N7 N7
C5 C5
O24 O24
C2 C2
C12 C12
C19 C19
S3 S3
C10 C10
CL1 CL1
H11 H11
H26 H26
H21 H21
H29 H29
H30 H30
H23 H23
H28 H28
H15 H15
H221 1H22
H222 2H22
H201 1H20
H202 2H20
H181 1H18
H182 2H18
H13 H13
H6 H6
H341 1H34
H342 2H34
H343 3H34
H7 H7
H12 H12
H19 H19