Atom Nomenclature for LZE

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for LZE

Atom Name (V3) Atom Name (V2)
C26 C26
C25 C25
C5 C5
N6 N6
C7 C7
O8 O8
C9 C9
N10 N10
N11 N11
C12 C12
C13 C13
N14 N14
C15 C15
O16 O16
C17 C17
C18 C18
C20 C20
C21 C21
C22 C22
C23 C23
C4 C4
N24 N24
C3 C3
CL1 CL1
CL7 CL7
H261 1H26
H262 2H26
H251 1H25
H252 2H25
H24 H24
H5 H5
H6 H6
H4C1 1H4C
H4C2 2H4C
H11 H11
H12 H12
H14 H14
H20 H20
H21 H21
H22 H22
H3C1 1H3C
H3C2 2H3C