Atom Nomenclature for LZ7

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for LZ7

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
O3 O3
N4 N4
C5 C5
C6 C6
N7 N7
N9 N9
C10 C10
C11 C11
O12 O12
N13 N13
C14 C14
C15 C15
C16 C16
C17 C17
F18 F18
C19 C19
C20 C20
H1C1 1H1C
H1C2 2H1C
H1C3 3H1C
H4 H4
H6 H6
H7 H7
H13 H13
H15 H15
H20 H20
H16 H16
H19 H19