PDB Chemical Component LZ6
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for LZ6
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O37 |
C35 |
1.248 |
1.208 |
| C34 |
C35 |
1.518 |
1.507 |
| C35 |
O36 |
1.249 |
1.343 |
| O36 |
HO36 |
0.950 |
0.967 |
| C33 |
C34 |
1.543 |
1.530 |
| C34 |
N38 |
1.459 |
1.469 |
| C34 |
H34 |
1.100 |
1.090 |
| N38 |
HN38 |
1.000 |
1.009 |
| N38 |
HN3A |
1.000 |
1.010 |
| C32 |
C33 |
1.536 |
1.531 |
| C33 |
H33 |
1.100 |
1.090 |
| C33 |
H33A |
1.100 |
1.090 |
| C30 |
C32 |
1.514 |
1.507 |
| C32 |
H32 |
1.099 |
1.090 |
| C32 |
H32A |
1.100 |
1.090 |
| N29 |
C30 |
1.319 |
1.348 |
| C30 |
O31 |
1.222 |
1.213 |
| C21 |
N29 |
1.447 |
1.465 |
| N29 |
HN29 |
1.000 |
0.969 |
| C22 |
C21 |
1.500 |
1.506 |
| C21 |
C20 |
1.525 |
1.530 |
| C21 |
H21 |
1.100 |
1.090 |
| N23 |
C22 |
1.329 |
1.348 |
| O28 |
C22 |
1.215 |
1.213 |
| C24 |
N23 |
1.447 |
1.466 |
| N23 |
HN23 |
0.999 |
0.969 |
| C25 |
C24 |
1.504 |
1.507 |
| C24 |
H24 |
1.100 |
1.089 |
| C24 |
H24A |
1.100 |
1.091 |
| O26 |
C25 |
1.252 |
1.207 |
| C25 |
O27 |
1.264 |
1.343 |
| O27 |
HO27 |
0.950 |
0.967 |
| S13 |
C20 |
1.751 |
1.814 |
| C20 |
H20 |
1.100 |
1.090 |
| C20 |
H20A |
1.100 |
1.089 |
| S13 |
C12 |
1.775 |
1.814 |
| C11 |
C12 |
1.538 |
1.530 |
| C12 |
H12 |
1.100 |
1.090 |
| C12 |
H12A |
1.100 |
1.090 |
| N7 |
C11 |
1.471 |
1.465 |
| C11 |
H11 |
1.100 |
1.091 |
| C11 |
H11A |
1.100 |
1.090 |
| C8 |
N7 |
1.472 |
1.465 |
| C1 |
N7 |
1.412 |
1.397 |
| C9 |
C8 |
1.530 |
1.530 |
| C8 |
H8 |
1.100 |
1.090 |
| C8 |
H8A |
1.100 |
1.090 |
| CL10 |
C9 |
1.794 |
1.803 |
| C9 |
H9 |
1.100 |
1.090 |
| C9 |
H9A |
1.099 |
1.090 |
| C6 |
C1 |
1.400 |
1.389 |
| C1 |
C2 |
1.396 |
1.389 |
| C5 |
C6 |
1.394 |
1.381 |
| C6 |
H6 |
1.080 |
1.080 |
| C5 |
C4 |
1.392 |
1.383 |
| C5 |
H5 |
1.080 |
1.080 |
| C14 |
C4 |
1.518 |
1.507 |
| C4 |
C3 |
1.396 |
1.383 |
| C3 |
C2 |
1.396 |
1.381 |
| C3 |
H3 |
1.080 |
1.080 |
| C2 |
H2 |
1.080 |
1.080 |
| C14 |
C15 |
1.527 |
1.530 |
| C14 |
H14 |
1.100 |
1.091 |
| C14 |
H14A |
1.100 |
1.090 |
| C16 |
C15 |
1.525 |
1.530 |
| C15 |
H15 |
1.100 |
1.090 |
| C15 |
H15A |
1.100 |
1.090 |
| C16 |
C17 |
1.513 |
1.507 |
| C16 |
H16 |
1.100 |
1.090 |
| C16 |
H16A |
1.100 |
1.090 |
| O18 |
C17 |
1.257 |
1.208 |
| C17 |
O19 |
1.253 |
1.342 |
| O19 |
HO19 |
0.950 |
0.968 |
Bond Angles for LZ6
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O37 |
C35 |
O36 |
121.5 |
120.0 |
| C35 |
O36 |
HO36 |
109.5 |
117.0 |
| C33 |
C34 |
H34 |
109.9 |
109.5 |
| N38 |
C34 |
H34 |
109.7 |
109.5 |
| C34 |
N38 |
HN38 |
109.5 |
111.0 |
| C34 |
N38 |
HN3A |
109.4 |
111.0 |
| HN38 |
N38 |
HN3A |
109.5 |
111.0 |
| C32 |
C33 |
H33 |
107.8 |
109.5 |
| C32 |
C33 |
H33A |
106.7 |
109.4 |
| H33 |
C33 |
H33A |
113.5 |
109.5 |
| C30 |
C32 |
H32 |
109.3 |
109.5 |
| C30 |
C32 |
H32A |
109.2 |
109.4 |
| H32 |
C32 |
H32A |
109.9 |
109.5 |
| C21 |
N29 |
HN29 |
121.1 |
120.0 |
| C22 |
C21 |
C20 |
113.7 |
109.5 |
| C22 |
C21 |
H21 |
105.2 |
109.5 |
| C20 |
C21 |
H21 |
106.7 |
109.5 |
| C21 |
C20 |
H20 |
108.5 |
109.4 |
| C21 |
C20 |
H20A |
107.9 |
109.4 |
| C24 |
N23 |
HN23 |
119.2 |
120.0 |
| C25 |
C24 |
H24 |
108.3 |
109.5 |
| C25 |
C24 |
H24A |
107.5 |
109.4 |
| H24 |
C24 |
H24A |
112.4 |
109.5 |
| C25 |
O27 |
HO27 |
109.5 |
117.0 |
| S13 |
C20 |
H20 |
108.5 |
109.5 |
| S13 |
C20 |
H20A |
107.9 |
109.5 |
| H20 |
C20 |
H20A |
111.7 |
109.5 |
| S13 |
C12 |
H12 |
108.5 |
109.5 |
| S13 |
C12 |
H12A |
107.8 |
109.5 |
| C11 |
C12 |
H12 |
108.4 |
109.5 |
| C11 |
C12 |
H12A |
107.8 |
109.5 |
| H12 |
C12 |
H12A |
111.9 |
109.5 |
| N7 |
C11 |
H11 |
109.7 |
109.4 |
| N7 |
C11 |
H11A |
109.8 |
109.5 |
| H11 |
C11 |
H11A |
109.0 |
109.5 |
| C9 |
C8 |
H8 |
109.5 |
109.5 |
| C9 |
C8 |
H8A |
109.5 |
109.4 |
| H8 |
C8 |
H8A |
109.5 |
109.4 |
| CL10 |
C9 |
H9 |
109.7 |
109.5 |
| CL10 |
C9 |
H9A |
109.9 |
109.5 |
| H9 |
C9 |
H9A |
108.8 |
109.4 |
| C6 |
C1 |
C2 |
118.4 |
119.8 |
| C1 |
C2 |
C3 |
120.5 |
119.9 |
| C1 |
C2 |
H2 |
119.8 |
120.0 |
| C5 |
C6 |
H6 |
119.5 |
120.0 |
| C4 |
C5 |
H5 |
119.8 |
119.9 |
| C5 |
C4 |
C3 |
118.6 |
120.2 |
| C4 |
C3 |
C2 |
121.0 |
120.1 |
| C4 |
C3 |
H3 |
119.5 |
120.0 |
| C2 |
C3 |
H3 |
119.5 |
120.0 |
| C3 |
C2 |
H2 |
119.8 |
120.0 |
| C15 |
C14 |
H14 |
108.5 |
109.4 |
| C15 |
C14 |
H14A |
107.9 |
109.5 |
| C14 |
C15 |
H15 |
108.6 |
109.5 |
| C14 |
C15 |
H15A |
107.9 |
109.5 |
| H14 |
C14 |
H14A |
111.7 |
109.5 |
| C16 |
C15 |
H15 |
108.5 |
109.5 |
| C16 |
C15 |
H15A |
107.9 |
109.4 |
| H15 |
C15 |
H15A |
111.7 |
109.5 |
| C17 |
C16 |
H16 |
109.7 |
109.5 |
| C17 |
C16 |
H16A |
109.8 |
109.5 |
| C16 |
C17 |
O19 |
118.5 |
120.0 |
| H16 |
C16 |
H16A |
109.0 |
109.4 |
| O18 |
C17 |
O19 |
122.9 |
120.0 |
| C17 |
O19 |
HO19 |
109.5 |
117.0 |
Torsion Angles for LZ6
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O37 |
C35 |
O36 |
HO36 |
360.0 |
0.0 |
| C34 |
C35 |
O36 |
HO36 |
180.9 |
180.3 |
| N38 |
C34 |
C33 |
H34 |
239.8 |
240.0 |
| C33 |
C34 |
N38 |
HN38 |
94.7 |
300.0 |
| C33 |
C34 |
N38 |
HN3A |
214.7 |
63.9 |
| C33 |
C34 |
N38 |
H34 |
120.3 |
120.0 |
| HN38 |
N38 |
C34 |
HN3A |
240.0 |
236.1 |
| H34 |
C34 |
N38 |
HN38 |
334.4 |
180.0 |
| H34 |
C34 |
N38 |
HN3A |
94.4 |
303.9 |
| HN38 |
N38 |
C34 |
H34 |
334.4 |
180.0 |
| C34 |
N38 |
HN38 |
HN3A |
120.0 |
123.9 |
| HN3A |
N38 |
C34 |
H34 |
94.4 |
303.9 |
| C34 |
N38 |
HN3A |
HN38 |
240.0 |
236.1 |
| C32 |
C33 |
C34 |
H34 |
304.5 |
55.0 |
| H33 |
C33 |
C32 |
H33A |
122.3 |
120.0 |
| H33 |
C33 |
C34 |
H34 |
64.5 |
175.0 |
| C32 |
C33 |
H33 |
H33A |
242.0 |
240.1 |
| H33A |
C33 |
C34 |
H34 |
186.7 |
295.0 |
| C32 |
C33 |
H33A |
H33 |
118.6 |
120.0 |
| C30 |
C32 |
C33 |
H33 |
51.8 |
60.0 |
| C30 |
C32 |
C33 |
H33A |
289.6 |
300.0 |
| H32 |
C32 |
C30 |
H32A |
120.2 |
120.1 |
| H32 |
C32 |
C33 |
H33 |
171.8 |
180.0 |
| H32 |
C32 |
C33 |
H33A |
49.6 |
60.0 |
| C30 |
C32 |
H32 |
H32A |
240.2 |
240.0 |
| H32A |
C32 |
C33 |
H33 |
292.0 |
300.0 |
| H32A |
C32 |
C33 |
H33A |
169.8 |
180.1 |
| C30 |
C32 |
H32A |
H32 |
119.8 |
120.1 |
| N29 |
C30 |
C32 |
H32 |
66.3 |
60.0 |
| N29 |
C30 |
C32 |
H32A |
306.1 |
299.9 |
| O31 |
C30 |
C32 |
H32 |
245.5 |
240.0 |
| O31 |
C30 |
C32 |
H32A |
125.3 |
119.9 |
| C22 |
C21 |
N29 |
HN29 |
34.7 |
95.0 |
| C20 |
C21 |
C22 |
H21 |
243.7 |
240.0 |
| C22 |
C21 |
C20 |
H20 |
70.2 |
300.0 |
| C22 |
C21 |
C20 |
H20A |
191.4 |
60.0 |
| C20 |
C21 |
N29 |
HN29 |
267.2 |
335.0 |
| C22 |
C21 |
C20 |
H21 |
115.5 |
120.0 |
| S13 |
C20 |
C21 |
H20 |
240.0 |
240.0 |
| S13 |
C20 |
C21 |
H20A |
118.8 |
120.0 |
| H20 |
C20 |
C21 |
H20A |
238.8 |
240.0 |
| H21 |
C21 |
N29 |
HN29 |
150.4 |
215.0 |
| C22 |
C21 |
H21 |
C20 |
238.9 |
240.0 |
| H21 |
C21 |
C20 |
H20 |
314.8 |
180.0 |
| H21 |
C21 |
C20 |
H20A |
76.0 |
300.0 |
| N23 |
C22 |
C21 |
C20 |
288.0 |
300.0 |
| N23 |
C22 |
C21 |
H21 |
44.3 |
60.0 |
| O28 |
C22 |
C21 |
C20 |
109.0 |
120.0 |
| O28 |
C22 |
C21 |
H21 |
225.4 |
240.0 |
| C25 |
C24 |
N23 |
HN23 |
295.2 |
360.0 |
| H24 |
C24 |
C25 |
H24A |
121.6 |
120.0 |
| H24 |
C24 |
N23 |
HN23 |
55.2 |
120.0 |
| C25 |
C24 |
H24 |
H24A |
241.5 |
240.0 |
| H24A |
C24 |
N23 |
HN23 |
176.7 |
240.0 |
| C25 |
C24 |
H24A |
H24 |
119.0 |
120.1 |
| O26 |
C25 |
C24 |
H24 |
48.6 |
240.0 |
| O26 |
C25 |
C24 |
H24A |
287.0 |
120.0 |
| O26 |
C25 |
O27 |
HO27 |
360.0 |
0.0 |
| O27 |
C25 |
C24 |
H24 |
228.3 |
60.0 |
| O27 |
C25 |
C24 |
H24A |
106.7 |
299.9 |
| S13 |
C20 |
C21 |
H21 |
194.8 |
60.0 |
| C21 |
C20 |
S13 |
H20 |
120.0 |
119.9 |
| C21 |
C20 |
S13 |
H20A |
241.2 |
240.0 |
| H20 |
C20 |
S13 |
H20A |
121.2 |
120.1 |
| H20 |
C20 |
C21 |
H21 |
314.8 |
180.0 |
| C21 |
C20 |
H20 |
H20A |
118.9 |
119.9 |
| S13 |
C20 |
H20 |
H20A |
241.1 |
239.9 |
| H20A |
C20 |
C21 |
H21 |
76.0 |
300.0 |
| C21 |
C20 |
H20A |
H20 |
240.8 |
240.1 |
| S13 |
C20 |
H20A |
H20 |
119.2 |
120.1 |
| C12 |
S13 |
C20 |
H20 |
53.7 |
60.1 |
| C12 |
S13 |
C20 |
H20A |
292.5 |
300.0 |
| C11 |
C12 |
S13 |
H12 |
240.0 |
240.0 |
| C11 |
C12 |
S13 |
H12A |
118.7 |
120.0 |
| H12 |
C12 |
S13 |
H12A |
238.7 |
240.0 |
| S13 |
C12 |
C11 |
H12 |
120.0 |
120.0 |
| S13 |
C12 |
C11 |
H12A |
241.3 |
240.0 |
| H12 |
C12 |
C11 |
H12A |
121.3 |
120.0 |
| S13 |
C12 |
H12 |
H12A |
118.8 |
120.0 |
| C11 |
C12 |
H12 |
H12A |
241.3 |
240.0 |
| S13 |
C12 |
H12A |
H12 |
240.8 |
240.0 |
| C11 |
C12 |
H12A |
H12 |
119.1 |
120.0 |
| N7 |
C11 |
C12 |
H12 |
170.2 |
60.0 |
| N7 |
C11 |
C12 |
H12A |
48.9 |
300.0 |
| H11 |
C11 |
N7 |
H11A |
119.7 |
120.0 |
| H11 |
C11 |
C12 |
H12 |
290.2 |
180.0 |
| H11 |
C11 |
C12 |
H12A |
168.9 |
59.9 |
| N7 |
C11 |
H11 |
H11A |
239.7 |
240.0 |
| H11A |
C11 |
C12 |
H12 |
49.9 |
300.0 |
| H11A |
C11 |
C12 |
H12A |
288.6 |
180.0 |
| N7 |
C11 |
H11A |
H11 |
120.2 |
119.9 |
| C8 |
N7 |
C11 |
H11 |
340.9 |
330.0 |
| C8 |
N7 |
C11 |
H11A |
221.1 |
210.1 |
| C1 |
N7 |
C11 |
H11 |
161.6 |
150.0 |
| C1 |
N7 |
C11 |
H11A |
41.9 |
30.1 |
| H8 |
C8 |
C9 |
H8A |
120.0 |
119.9 |
| C9 |
C8 |
H8 |
H8A |
240.0 |
240.1 |
| C9 |
C8 |
H8A |
H8 |
120.0 |
120.0 |
| CL10 |
C9 |
C8 |
H8 |
27.0 |
59.9 |
| CL10 |
C9 |
C8 |
H8A |
267.0 |
300.0 |
| H9 |
C9 |
CL10 |
H9A |
119.7 |
120.0 |
| H9 |
C9 |
C8 |
H8 |
147.0 |
180.0 |
| H9 |
C9 |
C8 |
H8A |
27.0 |
60.1 |
| CL10 |
C9 |
H9 |
H9A |
239.7 |
240.0 |
| H9A |
C9 |
C8 |
H8 |
266.7 |
299.9 |
| H9A |
C9 |
C8 |
H8A |
146.7 |
180.0 |
| CL10 |
C9 |
H9A |
H9 |
120.2 |
120.0 |
| C6 |
C1 |
C2 |
C3 |
0.1 |
359.5 |
| C6 |
C1 |
C2 |
H2 |
180.1 |
179.7 |
| C4 |
C3 |
C2 |
C1 |
0.4 |
0.5 |
| C1 |
C2 |
C3 |
H3 |
180.4 |
180.3 |
| C3 |
C2 |
C1 |
H2 |
180.0 |
179.9 |
| C5 |
C6 |
C1 |
C2 |
359.8 |
0.2 |
| H6 |
C6 |
C1 |
C2 |
179.8 |
180.1 |
| C4 |
C5 |
C6 |
H6 |
179.8 |
180.1 |
| C5 |
C4 |
C3 |
C2 |
359.2 |
359.8 |
| C5 |
C4 |
C3 |
H3 |
179.2 |
180.0 |
| H5 |
C5 |
C6 |
H6 |
359.8 |
0.1 |
| H5 |
C5 |
C4 |
C3 |
180.7 |
180.0 |
| C14 |
C4 |
C5 |
H5 |
359.8 |
0.0 |
| C14 |
C4 |
C3 |
H3 |
0.1 |
360.0 |
| C1 |
C2 |
C3 |
C4 |
0.4 |
0.5 |
| C3 |
C4 |
C5 |
H5 |
180.7 |
180.0 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
179.8 |
| C4 |
C3 |
C2 |
H2 |
180.4 |
180.3 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
180.1 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
180.2 |
| C4 |
C3 |
H3 |
C2 |
180.0 |
179.8 |
| H3 |
C3 |
C2 |
H2 |
0.4 |
0.1 |
| C1 |
C2 |
H2 |
C3 |
180.0 |
179.9 |
| H2 |
C2 |
C3 |
H3 |
0.4 |
0.1 |
| H14 |
C14 |
C15 |
H14A |
121.2 |
120.0 |
| C16 |
C15 |
C14 |
H15 |
240.0 |
240.0 |
| C16 |
C15 |
C14 |
H15A |
118.8 |
120.0 |
| H15 |
C15 |
C14 |
H15A |
238.8 |
240.0 |
| C15 |
C14 |
H14 |
H14A |
241.2 |
240.0 |
| H14 |
C14 |
C15 |
H15 |
236.6 |
180.0 |
| H14 |
C14 |
C15 |
H15A |
357.8 |
300.0 |
| C15 |
C14 |
H14A |
H14 |
119.2 |
120.0 |
| H14A |
C14 |
C15 |
H15 |
115.4 |
60.0 |
| H14A |
C14 |
C15 |
H15A |
236.6 |
180.1 |
| C16 |
C15 |
C14 |
H14 |
116.6 |
60.0 |
| C16 |
C15 |
C14 |
H14A |
355.4 |
300.0 |
| C14 |
C15 |
C16 |
H15 |
120.0 |
120.0 |
| C14 |
C15 |
C16 |
H15A |
241.2 |
240.0 |
| H15 |
C15 |
C16 |
H15A |
121.2 |
120.0 |
| H15 |
C15 |
C14 |
H14 |
236.6 |
180.0 |
| H15 |
C15 |
C14 |
H14A |
115.4 |
60.0 |
| C14 |
C15 |
H15 |
H15A |
118.9 |
120.0 |
| C16 |
C15 |
H15 |
H15A |
241.2 |
240.0 |
| H15A |
C15 |
C14 |
H14 |
357.8 |
300.0 |
| H15A |
C15 |
C14 |
H14A |
236.6 |
180.1 |
| C14 |
C15 |
H15A |
H15 |
240.8 |
240.0 |
| C16 |
C15 |
H15A |
H15 |
119.2 |
120.0 |
| C17 |
C16 |
C15 |
H15 |
70.0 |
60.0 |
| C17 |
C16 |
C15 |
H15A |
308.8 |
300.0 |
| H16 |
C16 |
C17 |
H16A |
119.7 |
120.0 |
| O18 |
C17 |
C16 |
O19 |
180.1 |
180.0 |
| C16 |
C17 |
O19 |
HO19 |
180.2 |
180.0 |
| H16 |
C16 |
C15 |
H15 |
190.0 |
180.0 |
| H16 |
C16 |
C15 |
H15A |
68.8 |
60.0 |
| C17 |
C16 |
H16 |
H16A |
239.8 |
239.9 |
| H16 |
C16 |
C17 |
O19 |
154.5 |
60.0 |
| H16A |
C16 |
C15 |
H15 |
309.7 |
300.0 |
| H16A |
C16 |
C15 |
H15A |
188.6 |
179.9 |
| C17 |
C16 |
H16A |
H16 |
120.1 |
120.0 |
| H16A |
C16 |
C17 |
O19 |
34.8 |
300.0 |
| O18 |
C17 |
C16 |
H16 |
334.6 |
240.0 |
| O18 |
C17 |
C16 |
H16A |
214.9 |
120.0 |
| C16 |
C17 |
O18 |
O19 |
179.9 |
180.0 |
| O18 |
C17 |
O19 |
HO19 |
0.0 |
0.0 |
| O19 |
C17 |
C16 |
H16 |
154.5 |
60.0 |
| O19 |
C17 |
C16 |
H16A |
34.8 |
300.0 |