PDB Chemical Component LYZ

Ideal Model

Chemical Description

Name 5-HYDROXYLYSINE
Formula C6 H14 N2 O3
Formal charge 0
Molecular weight 162.187 g/mol
Component type L-PEPTIDE LINKING
Nonstandard Parent Id LYS

Chemical features

Atom count 25
Chiral atom count 2
Chiral atoms CA CD
Observed leaving atoms OXT H2 HXT
Bond count 24
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) (5R)-5-hydroxy-L-lysine
Systematic name (OpenEye OEToolkits) (2S,5R)-2,6-diamino-5-hydroxy-hexanoic acid

Chemical Descriptors

Stereo SMILES (CACTVS) NC[C@H](O)CC[C@H](N)C(O)=O
SMILES (CACTVS) NC[CH](O)CC[CH](N)C(O)=O
Stereo SMILES (OpenEye) C(C[C@@H](C(=O)O)N)[C@H](CN)O
InChI descriptor InChI=1S/C6H14N2O3/c7-3-4(9)1-2-5(8)6(10)11/h4-5,9H,1-3,7-8H2,(H,10,11)/t4-,5+/m1/s1
InChIKey descriptor YSMODUONRAFBET-UHNVWZDZSA-N

Status Information

Last modified 2023-11-03
Created 1999-07-08
Release status REL
Model PDB code 1QGW
Processing site RCSB