PDB Chemical Component LYT
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for LYT
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
N |
1.471 |
1.468 |
C1 |
C2 |
1.522 |
1.529 |
C1 |
H11 |
1.115 |
1.089 |
C1 |
H12 |
1.114 |
1.090 |
N |
HN1 |
1.019 |
1.008 |
N |
HN2 |
1.020 |
1.008 |
C2 |
C3 |
1.527 |
1.529 |
C2 |
H21 |
1.115 |
1.089 |
C2 |
H22 |
1.116 |
1.090 |
C3 |
C4 |
1.512 |
1.529 |
C3 |
H31 |
1.115 |
1.090 |
C3 |
H32 |
1.115 |
1.090 |
C4 |
H41 |
1.115 |
1.089 |
C4 |
H42 |
1.114 |
1.090 |
C4 |
H43 |
1.115 |
1.090 |
Bond Angles for LYT
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N |
C1 |
C2 |
108.4 |
109.5 |
N |
C1 |
H11 |
112.6 |
109.5 |
N |
C1 |
H12 |
112.6 |
109.4 |
C1 |
N |
HN1 |
108.4 |
106.8 |
C1 |
N |
HN2 |
112.6 |
106.8 |
C2 |
C1 |
H11 |
112.6 |
109.6 |
C2 |
C1 |
H12 |
112.6 |
109.4 |
C1 |
C2 |
C3 |
117.3 |
109.5 |
C1 |
C2 |
H21 |
109.4 |
109.5 |
C1 |
C2 |
H22 |
109.4 |
109.4 |
H11 |
C1 |
H12 |
97.9 |
109.5 |
HN1 |
N |
HN2 |
112.6 |
106.7 |
C3 |
C2 |
H21 |
109.4 |
109.5 |
C3 |
C2 |
H22 |
109.4 |
109.4 |
C2 |
C3 |
C4 |
113.2 |
109.6 |
C2 |
C3 |
H31 |
110.9 |
109.5 |
C2 |
C3 |
H32 |
110.9 |
109.5 |
H21 |
C2 |
H22 |
100.7 |
109.4 |
C4 |
C3 |
H31 |
110.9 |
109.5 |
C4 |
C3 |
H32 |
110.9 |
109.4 |
C3 |
C4 |
H41 |
113.1 |
109.6 |
C3 |
C4 |
H42 |
110.9 |
109.5 |
C3 |
C4 |
H43 |
110.9 |
109.5 |
H31 |
C3 |
H32 |
99.4 |
109.4 |
H41 |
C4 |
H42 |
110.8 |
109.4 |
H41 |
C4 |
H43 |
110.8 |
109.5 |
H42 |
C4 |
H43 |
99.5 |
109.4 |
Torsion Angles for LYT
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
N |
H11 |
234.8 |
120.1 |
C2 |
C1 |
N |
H12 |
125.2 |
240.1 |
N |
C1 |
C2 |
C3 |
163.5 |
180.0 |
N |
C1 |
C2 |
H21 |
288.7 |
59.8 |
N |
C1 |
C2 |
H22 |
38.2 |
299.9 |
H11 |
C1 |
N |
H12 |
250.4 |
120.0 |
HN1 |
N |
C1 |
HN2 |
125.3 |
246.1 |
N |
C1 |
C2 |
H11 |
125.2 |
239.9 |
N |
C1 |
C2 |
H12 |
234.7 |
119.9 |
C2 |
C1 |
N |
HN1 |
180.0 |
180.1 |
C2 |
C1 |
N |
HN2 |
54.7 |
293.9 |
H11 |
C1 |
C2 |
H12 |
109.5 |
240.0 |
C3 |
C2 |
C1 |
H21 |
234.7 |
120.1 |
C3 |
C2 |
C1 |
H22 |
125.3 |
240.1 |
C1 |
C2 |
C3 |
C4 |
61.1 |
180.0 |
C1 |
C2 |
C3 |
H31 |
186.3 |
59.9 |
C1 |
C2 |
C3 |
H32 |
295.7 |
299.9 |
H21 |
C2 |
C1 |
H22 |
250.5 |
119.9 |
N |
C1 |
H11 |
C2 |
237.1 |
120.1 |
N |
C1 |
H11 |
H12 |
118.6 |
240.1 |
H11 |
C1 |
N |
HN1 |
305.2 |
59.9 |
H11 |
C1 |
N |
HN2 |
179.9 |
173.8 |
C2 |
C1 |
H11 |
H12 |
241.5 |
120.0 |
H11 |
C1 |
C2 |
C3 |
38.2 |
300.1 |
H11 |
C1 |
C2 |
H21 |
163.5 |
179.9 |
H11 |
C1 |
C2 |
H22 |
272.9 |
60.0 |
N |
C1 |
H12 |
C2 |
122.9 |
240.0 |
N |
C1 |
H12 |
H11 |
241.4 |
120.0 |
H12 |
C1 |
N |
HN1 |
54.8 |
300.0 |
H12 |
C1 |
N |
HN2 |
289.5 |
53.8 |
C2 |
C1 |
H12 |
H11 |
118.5 |
239.9 |
H12 |
C1 |
C2 |
C3 |
288.7 |
60.1 |
H12 |
C1 |
C2 |
H21 |
54.0 |
299.9 |
H12 |
C1 |
C2 |
H22 |
163.4 |
180.0 |
HN1 |
N |
C1 |
C2 |
180.0 |
180.1 |
HN1 |
N |
C1 |
H11 |
305.2 |
59.9 |
HN1 |
N |
C1 |
H12 |
54.8 |
300.0 |
C1 |
N |
HN1 |
HN2 |
234.7 |
113.9 |
HN2 |
N |
C1 |
C2 |
54.7 |
293.9 |
HN2 |
N |
C1 |
H11 |
179.9 |
173.8 |
HN2 |
N |
C1 |
H12 |
289.5 |
53.8 |
C1 |
N |
HN2 |
HN1 |
122.9 |
246.1 |
C3 |
C2 |
C1 |
H11 |
38.2 |
300.1 |
C3 |
C2 |
C1 |
H12 |
288.7 |
60.1 |
C1 |
C2 |
C3 |
H21 |
125.3 |
239.9 |
C1 |
C2 |
C3 |
H22 |
234.7 |
119.9 |
H21 |
C2 |
C3 |
H22 |
109.4 |
240.1 |
C4 |
C3 |
C2 |
H31 |
234.7 |
120.1 |
C4 |
C3 |
C2 |
H32 |
125.3 |
240.0 |
C2 |
C3 |
C4 |
H41 |
180.0 |
180.0 |
C2 |
C3 |
C4 |
H42 |
305.2 |
300.0 |
C2 |
C3 |
C4 |
H43 |
54.8 |
59.9 |
H31 |
C3 |
C2 |
H32 |
250.6 |
120.0 |
H21 |
C2 |
C1 |
H11 |
163.5 |
179.9 |
H21 |
C2 |
C1 |
H12 |
54.0 |
299.9 |
C1 |
C2 |
H21 |
C3 |
230.3 |
120.1 |
C1 |
C2 |
H21 |
H22 |
115.2 |
240.1 |
C3 |
C2 |
H21 |
H22 |
244.9 |
119.9 |
H21 |
C2 |
C3 |
C4 |
295.7 |
300.1 |
H21 |
C2 |
C3 |
H31 |
61.0 |
180.0 |
H21 |
C2 |
C3 |
H32 |
170.4 |
60.1 |
H22 |
C2 |
C1 |
H11 |
272.9 |
60.0 |
H22 |
C2 |
C1 |
H12 |
163.4 |
180.0 |
C1 |
C2 |
H22 |
C3 |
129.7 |
240.0 |
C1 |
C2 |
H22 |
H21 |
244.8 |
120.0 |
C3 |
C2 |
H22 |
H21 |
115.1 |
240.0 |
H22 |
C2 |
C3 |
C4 |
186.3 |
60.0 |
H22 |
C2 |
C3 |
H31 |
311.6 |
300.0 |
H22 |
C2 |
C3 |
H32 |
61.0 |
180.0 |
C4 |
C3 |
C2 |
H21 |
295.7 |
300.1 |
C4 |
C3 |
C2 |
H22 |
186.3 |
60.0 |
C2 |
C3 |
C4 |
H31 |
125.3 |
239.9 |
C2 |
C3 |
C4 |
H32 |
234.7 |
120.0 |
H31 |
C3 |
C4 |
H32 |
109.4 |
240.1 |
H41 |
C4 |
C3 |
H42 |
234.8 |
240.0 |
H41 |
C4 |
C3 |
H43 |
125.2 |
120.1 |
H42 |
C4 |
C3 |
H43 |
250.4 |
240.1 |
H31 |
C3 |
C2 |
H21 |
61.0 |
180.0 |
H31 |
C3 |
C2 |
H22 |
311.6 |
300.0 |
C2 |
C3 |
H31 |
C4 |
233.4 |
120.1 |
C2 |
C3 |
H31 |
H32 |
116.7 |
240.0 |
C4 |
C3 |
H31 |
H32 |
243.3 |
119.9 |
H31 |
C3 |
C4 |
H41 |
54.7 |
300.1 |
H31 |
C3 |
C4 |
H42 |
180.0 |
60.1 |
H31 |
C3 |
C4 |
H43 |
289.5 |
180.0 |
H32 |
C3 |
C2 |
H21 |
170.4 |
60.1 |
H32 |
C3 |
C2 |
H22 |
61.0 |
180.0 |
C2 |
C3 |
H32 |
C4 |
126.6 |
239.9 |
C2 |
C3 |
H32 |
H31 |
243.3 |
120.0 |
C4 |
C3 |
H32 |
H31 |
116.7 |
240.1 |
H32 |
C3 |
C4 |
H41 |
305.3 |
60.0 |
H32 |
C3 |
C4 |
H42 |
70.5 |
180.0 |
H32 |
C3 |
C4 |
H43 |
180.1 |
299.9 |
H41 |
C4 |
C3 |
H31 |
54.7 |
300.1 |
H41 |
C4 |
C3 |
H32 |
305.3 |
60.0 |
C3 |
C4 |
H41 |
H42 |
125.2 |
120.0 |
C3 |
C4 |
H41 |
H43 |
234.8 |
239.9 |
H42 |
C4 |
H41 |
H43 |
109.5 |
119.9 |
H42 |
C4 |
C3 |
H31 |
180.0 |
60.1 |
H42 |
C4 |
C3 |
H32 |
70.5 |
180.0 |
C3 |
C4 |
H42 |
H41 |
233.5 |
239.9 |
C3 |
C4 |
H42 |
H43 |
116.8 |
119.9 |
H41 |
C4 |
H42 |
H43 |
243.3 |
240.0 |
H43 |
C4 |
C3 |
H31 |
289.5 |
180.0 |
H43 |
C4 |
C3 |
H32 |
180.1 |
299.9 |
C3 |
C4 |
H43 |
H41 |
126.5 |
120.2 |
C3 |
C4 |
H43 |
H42 |
243.2 |
240.1 |
H41 |
C4 |
H43 |
H42 |
116.7 |
119.9 |