PDB Chemical Component LYT

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for LYT

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 N 1.471 1.468
C1 C2 1.522 1.529
C1 H11 1.115 1.089
C1 H12 1.114 1.090
N HN1 1.019 1.008
N HN2 1.020 1.008
C2 C3 1.527 1.529
C2 H21 1.115 1.089
C2 H22 1.116 1.090
C3 C4 1.512 1.529
C3 H31 1.115 1.090
C3 H32 1.115 1.090
C4 H41 1.115 1.089
C4 H42 1.114 1.090
C4 H43 1.115 1.090

Bond Angles for LYT

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N C1 C2 108.4 109.5
N C1 H11 112.6 109.5
N C1 H12 112.6 109.4
C1 N HN1 108.4 106.8
C1 N HN2 112.6 106.8
C2 C1 H11 112.6 109.6
C2 C1 H12 112.6 109.4
C1 C2 C3 117.3 109.5
C1 C2 H21 109.4 109.5
C1 C2 H22 109.4 109.4
H11 C1 H12 97.9 109.5
HN1 N HN2 112.6 106.7
C3 C2 H21 109.4 109.5
C3 C2 H22 109.4 109.4
C2 C3 C4 113.2 109.6
C2 C3 H31 110.9 109.5
C2 C3 H32 110.9 109.5
H21 C2 H22 100.7 109.4
C4 C3 H31 110.9 109.5
C4 C3 H32 110.9 109.4
C3 C4 H41 113.1 109.6
C3 C4 H42 110.9 109.5
C3 C4 H43 110.9 109.5
H31 C3 H32 99.4 109.4
H41 C4 H42 110.8 109.4
H41 C4 H43 110.8 109.5
H42 C4 H43 99.5 109.4

Torsion Angles for LYT

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 C1 N H11 234.8 120.1
C2 C1 N H12 125.2 240.1
N C1 C2 C3 163.5 180.0
N C1 C2 H21 288.7 59.8
N C1 C2 H22 38.2 299.9
H11 C1 N H12 250.4 120.0
HN1 N C1 HN2 125.3 246.1
N C1 C2 H11 125.2 239.9
N C1 C2 H12 234.7 119.9
C2 C1 N HN1 180.0 180.1
C2 C1 N HN2 54.7 293.9
H11 C1 C2 H12 109.5 240.0
C3 C2 C1 H21 234.7 120.1
C3 C2 C1 H22 125.3 240.1
C1 C2 C3 C4 61.1 180.0
C1 C2 C3 H31 186.3 59.9
C1 C2 C3 H32 295.7 299.9
H21 C2 C1 H22 250.5 119.9
N C1 H11 C2 237.1 120.1
N C1 H11 H12 118.6 240.1
H11 C1 N HN1 305.2 59.9
H11 C1 N HN2 179.9 173.8
C2 C1 H11 H12 241.5 120.0
H11 C1 C2 C3 38.2 300.1
H11 C1 C2 H21 163.5 179.9
H11 C1 C2 H22 272.9 60.0
N C1 H12 C2 122.9 240.0
N C1 H12 H11 241.4 120.0
H12 C1 N HN1 54.8 300.0
H12 C1 N HN2 289.5 53.8
C2 C1 H12 H11 118.5 239.9
H12 C1 C2 C3 288.7 60.1
H12 C1 C2 H21 54.0 299.9
H12 C1 C2 H22 163.4 180.0
HN1 N C1 C2 180.0 180.1
HN1 N C1 H11 305.2 59.9
HN1 N C1 H12 54.8 300.0
C1 N HN1 HN2 234.7 113.9
HN2 N C1 C2 54.7 293.9
HN2 N C1 H11 179.9 173.8
HN2 N C1 H12 289.5 53.8
C1 N HN2 HN1 122.9 246.1
C3 C2 C1 H11 38.2 300.1
C3 C2 C1 H12 288.7 60.1
C1 C2 C3 H21 125.3 239.9
C1 C2 C3 H22 234.7 119.9
H21 C2 C3 H22 109.4 240.1
C4 C3 C2 H31 234.7 120.1
C4 C3 C2 H32 125.3 240.0
C2 C3 C4 H41 180.0 180.0
C2 C3 C4 H42 305.2 300.0
C2 C3 C4 H43 54.8 59.9
H31 C3 C2 H32 250.6 120.0
H21 C2 C1 H11 163.5 179.9
H21 C2 C1 H12 54.0 299.9
C1 C2 H21 C3 230.3 120.1
C1 C2 H21 H22 115.2 240.1
C3 C2 H21 H22 244.9 119.9
H21 C2 C3 C4 295.7 300.1
H21 C2 C3 H31 61.0 180.0
H21 C2 C3 H32 170.4 60.1
H22 C2 C1 H11 272.9 60.0
H22 C2 C1 H12 163.4 180.0
C1 C2 H22 C3 129.7 240.0
C1 C2 H22 H21 244.8 120.0
C3 C2 H22 H21 115.1 240.0
H22 C2 C3 C4 186.3 60.0
H22 C2 C3 H31 311.6 300.0
H22 C2 C3 H32 61.0 180.0
C4 C3 C2 H21 295.7 300.1
C4 C3 C2 H22 186.3 60.0
C2 C3 C4 H31 125.3 239.9
C2 C3 C4 H32 234.7 120.0
H31 C3 C4 H32 109.4 240.1
H41 C4 C3 H42 234.8 240.0
H41 C4 C3 H43 125.2 120.1
H42 C4 C3 H43 250.4 240.1
H31 C3 C2 H21 61.0 180.0
H31 C3 C2 H22 311.6 300.0
C2 C3 H31 C4 233.4 120.1
C2 C3 H31 H32 116.7 240.0
C4 C3 H31 H32 243.3 119.9
H31 C3 C4 H41 54.7 300.1
H31 C3 C4 H42 180.0 60.1
H31 C3 C4 H43 289.5 180.0
H32 C3 C2 H21 170.4 60.1
H32 C3 C2 H22 61.0 180.0
C2 C3 H32 C4 126.6 239.9
C2 C3 H32 H31 243.3 120.0
C4 C3 H32 H31 116.7 240.1
H32 C3 C4 H41 305.3 60.0
H32 C3 C4 H42 70.5 180.0
H32 C3 C4 H43 180.1 299.9
H41 C4 C3 H31 54.7 300.1
H41 C4 C3 H32 305.3 60.0
C3 C4 H41 H42 125.2 120.0
C3 C4 H41 H43 234.8 239.9
H42 C4 H41 H43 109.5 119.9
H42 C4 C3 H31 180.0 60.1
H42 C4 C3 H32 70.5 180.0
C3 C4 H42 H41 233.5 239.9
C3 C4 H42 H43 116.8 119.9
H41 C4 H42 H43 243.3 240.0
H43 C4 C3 H31 289.5 180.0
H43 C4 C3 H32 180.1 299.9
C3 C4 H43 H41 126.5 120.2
C3 C4 H43 H42 243.2 240.1
H41 C4 H43 H42 116.7 119.9