PDB Chemical Component LYS_LFZW

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for LYS_LFZW

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N	CA	1.456	1.470
CA	C	1.535	1.508
CA	CB	1.525	1.530
CA	HA	1.101	1.090
C	O	1.254	1.219
C	OXT	1.264	1.219
CB	CG	1.515	1.530
CB	HB2	1.100	1.091
CB	HB3	1.100	1.091
CG	CD	1.531	1.530
CG	HG2	1.100	1.090
CG	HG3	1.100	1.091
CD	CE	1.538	1.530
CD	HD2	1.100	1.091
CD	HD3	1.100	1.091
CE	NZ	1.480	1.468
CE	HE2	1.100	1.091
CE	HE3	1.100	1.090
NZ	HZ1	0.999	1.009
NZ	HZ2	1.000	1.010
NZ	HZ3	1.000	1.009
H1	N	1.000	1.009
H2	N	1.000	1.009
H3	N	1.000	1.009

Bond Angles for LYS_LFZW

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N	CA	C	112.0	109.5
N	CA	CB	111.4	109.5
N	CA	HA	106.7	109.4
C	CA	CB	110.4	109.5
C	CA	HA	107.8	109.5
CA	C	O	120.4	119.9
CA	C	OXT	115.5	120.0
CB	CA	HA	108.3	109.5
CA	CB	CG	114.8	109.5
CA	CB	HB2	107.7	109.5
CA	CB	HB3	106.5	109.5
O	C	OXT	121.5	120.1
CG	CB	HB2	107.7	109.5
CG	CB	HB3	106.5	109.5
CB	CG	CD	110.7	109.5
CB	CG	HG2	109.1	109.4
CB	CG	HG3	108.8	109.5
HB2	CB	HB3	113.8	109.5
CD	CG	HG2	109.0	109.5
CD	CG	HG3	108.8	109.5
CG	CD	CE	110.2	109.5
CG	CD	HD2	109.3	109.5
CG	CD	HD3	109.1	109.5
HG2	CG	HG3	110.4	109.5
CE	CD	HD2	109.2	109.5
CE	CD	HD3	109.1	109.5
CD	CE	NZ	106.5	109.5
CD	CE	HE2	110.5	109.4
CD	CE	HE3	111.1	109.5
HD2	CD	HD3	110.0	109.5
NZ	CE	HE2	110.5	109.5
NZ	CE	HE3	111.1	109.5
CE	NZ	HZ1	109.5	109.5
CE	NZ	HZ2	109.5	109.5
CE	NZ	HZ3	109.4	109.5
HE2	CE	HE3	107.2	109.5
HZ1	NZ	HZ2	109.4	109.4
HZ1	NZ	HZ3	109.5	109.5
HZ2	NZ	HZ3	109.5	109.5

Torsion Angles for LYS_LFZW

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C	CA	N	CB	124.3	120.0
C	CA	N	HA	242.3	240.0
N	CA	C	O	359.5	170.0
N	CA	C	OXT	161.3	350.0
CB	CA	N	HA	118.1	120.0
N	CA	CB	CG	62.5	295.0
N	CA	CB	HB2	182.5	55.0
N	CA	CB	HB3	305.0	175.0
N	CA	C	CB	235.2	240.0
N	CA	C	HA	117.0	120.0
CB	CA	C	HA	241.8	240.0
C	CA	CB	CG	297.4	175.0
C	CA	CB	HB2	57.4	295.0
C	CA	CB	HB3	179.8	55.0
O	C	CA	OXT	198.2	179.9
N	CA	CB	C	125.1	120.0
N	CA	CB	HA	242.9	240.0
C	CA	CB	HA	117.8	120.0
CB	CA	C	O	124.3	290.0
CB	CA	C	OXT	286.1	110.0
CG	CB	CA	HB2	240.0	240.0
CG	CB	CA	HB3	117.6	120.0
CA	CB	CG	CD	127.4	180.0
CA	CB	CG	HG2	247.4	300.0
CA	CB	CG	HG3	7.9	60.0
HB2	CB	CA	HB3	237.6	240.0
N	CA	HA	C	239.6	240.0
N	CA	HA	CB	120.1	120.0
C	CA	HA	CB	240.5	240.0
HA	CA	C	O	242.4	50.0
HA	CA	C	OXT	44.2	230.1
HA	CA	CB	CG	179.6	55.0
HA	CA	CB	HB2	299.6	175.0
HA	CA	CB	HB3	62.0	295.0
O	C	CA	CB	124.3	290.0
O	C	CA	HA	242.4	50.0
CA	C	O	OXT	160.7	180.1
OXT	C	CA	CB	286.1	110.0
OXT	C	CA	HA	44.2	230.1
CA	C	OXT	O	198.4	179.9
CG	CB	CA	HA	179.6	55.0
CA	CB	CG	HB2	120.0	120.0
CA	CB	CG	HB3	242.4	240.0
HB2	CB	CG	HB3	122.4	120.0
CD	CG	CB	HG2	240.0	240.0
CD	CG	CB	HG3	119.5	120.0
CB	CG	CD	CE	200.8	180.0
CB	CG	CD	HD2	320.7	300.0
CB	CG	CD	HD3	81.0	60.0
HG2	CG	CB	HG3	239.5	240.0
HB2	CB	CA	HA	299.6	175.0
CA	CB	HB2	CG	235.6	240.0
CA	CB	HB2	HB3	117.8	120.0
CG	CB	HB2	HB3	242.2	240.0
HB2	CB	CG	CD	7.4	60.0
HB2	CB	CG	HG2	127.4	180.0
HB2	CB	CG	HG3	247.9	300.0
HB3	CB	CA	HA	62.0	295.0
CA	CB	HB3	CG	123.0	120.0
CA	CB	HB3	HB2	241.5	240.0
CG	CB	HB3	HB2	118.5	120.0
HB3	CB	CG	CD	245.0	300.0
HB3	CB	CG	HG2	5.0	60.0
HB3	CB	CG	HG3	125.5	180.0
CD	CG	CB	HB2	7.4	60.0
CD	CG	CB	HB3	245.0	300.0
CB	CG	CD	HG2	120.0	120.0
CB	CG	CD	HG3	240.5	240.0
HG2	CG	CD	HG3	120.5	120.0
CE	CD	CG	HD2	240.0	240.0
CE	CD	CG	HD3	119.7	120.0
CG	CD	CE	NZ	324.2	180.0
CG	CD	CE	HE2	84.2	300.0
CG	CD	CE	HE3	203.0	60.0
HD2	CD	CG	HD3	239.7	240.0
HG2	CG	CB	HB2	127.4	180.0
HG2	CG	CB	HB3	5.0	60.0
CB	CG	HG2	CD	238.9	240.0
CB	CG	HG2	HG3	119.5	120.0
CD	CG	HG2	HG3	240.5	240.0
HG2	CG	CD	CE	80.7	60.0
HG2	CG	CD	HD2	200.7	180.0
HG2	CG	CD	HD3	321.0	300.0
HG3	CG	CB	HB2	247.9	300.0
HG3	CG	CB	HB3	125.5	180.0
CB	CG	HG3	CD	120.7	120.0
CB	CG	HG3	HG2	240.3	240.0
CD	CG	HG3	HG2	119.6	120.0
HG3	CG	CD	CE	320.2	300.0
HG3	CG	CD	HD2	80.2	60.0
HG3	CG	CD	HD3	200.5	180.0
CE	CD	CG	HG2	80.7	60.0
CE	CD	CG	HG3	320.2	300.0
CG	CD	CE	HD2	120.0	120.0
CG	CD	CE	HD3	240.3	240.0
HD2	CD	CE	HD3	120.3	120.0
NZ	CE	CD	HE2	240.0	240.0
NZ	CE	CD	HE3	121.1	120.0
CD	CE	NZ	HZ1	282.7	180.0
CD	CE	NZ	HZ2	42.7	300.0
CD	CE	NZ	HZ3	162.7	60.0
HE2	CE	CD	HE3	241.1	240.0
HD2	CD	CG	HG2	200.7	180.0
HD2	CD	CG	HG3	80.2	60.0
CG	CD	HD2	CE	239.4	240.0
CG	CD	HD2	HD3	119.7	120.0
CE	CD	HD2	HD3	240.3	240.0
HD2	CD	CE	NZ	204.2	60.0
HD2	CD	CE	HE2	324.2	180.0
HD2	CD	CE	HE3	83.0	300.0
HD3	CD	CG	HG2	321.0	300.0
HD3	CD	CG	HG3	200.5	180.0
CG	CD	HD3	CE	120.4	120.0
CG	CD	HD3	HD2	240.2	240.0
CE	CD	HD3	HD2	119.8	120.0
HD3	CD	CE	NZ	83.9	300.0
HD3	CD	CE	HE2	203.9	60.0
HD3	CD	CE	HE3	322.7	180.0
NZ	CE	CD	HD2	204.2	60.0
NZ	CE	CD	HD3	83.9	300.0
CD	CE	NZ	HE2	120.0	120.0
CD	CE	NZ	HE3	238.9	240.0
HE2	CE	NZ	HE3	118.9	120.0
HZ1	NZ	CE	HZ2	240.0	240.0
HZ1	NZ	CE	HZ3	120.0	120.1
HZ2	NZ	CE	HZ3	240.0	240.0
HE2	CE	CD	HD2	324.2	180.0
HE2	CE	CD	HD3	203.9	60.0
CD	CE	HE2	NZ	242.4	240.0
CD	CE	HE2	HE3	121.2	120.0
NZ	CE	HE2	HE3	238.8	240.0
HE2	CE	NZ	HZ1	162.7	60.1
HE2	CE	NZ	HZ2	282.7	180.0
HE2	CE	NZ	HZ3	42.7	300.0
HE3	CE	CD	HD2	83.0	300.0
HE3	CE	CD	HD3	322.7	180.0
CD	CE	HE3	NZ	118.4	120.0
CD	CE	HE3	HE2	239.2	240.0
NZ	CE	HE3	HE2	120.8	120.0
HE3	CE	NZ	HZ1	43.8	300.0
HE3	CE	NZ	HZ2	163.8	60.0
HE3	CE	NZ	HZ3	283.8	180.0
HZ1	NZ	CE	HE2	162.7	60.1
HZ1	NZ	CE	HE3	43.8	300.0
CE	NZ	HZ1	HZ2	120.0	120.0
CE	NZ	HZ1	HZ3	240.0	240.0
HZ2	NZ	HZ1	HZ3	120.0	120.0
HZ2	NZ	CE	HE2	282.7	180.0
HZ2	NZ	CE	HE3	163.8	60.0
CE	NZ	HZ2	HZ1	240.0	240.0
CE	NZ	HZ2	HZ3	120.0	120.0
HZ1	NZ	HZ2	HZ3	240.0	240.0
HZ3	NZ	CE	HE2	42.7	300.0
HZ3	NZ	CE	HE3	283.8	180.0
CE	NZ	HZ3	HZ1	120.0	120.1
CE	NZ	HZ3	HZ2	240.0	240.0
HZ1	NZ	HZ3	HZ2	120.0	120.0