PDB Chemical Component LYR

Ideal Model

Chemical Description

Name N~6~-[(2Z,4E,6E,8E)-3,7-DIMETHYL-9-(2,6,6-TRIMETHYLCYCLOHEX-1-EN-1-YL)NONA-2,4,6,8-TETRAENYL]LYSINE
Formula C26 H42 N2 O2
Formal charge 0
Molecular weight 414.624 g/mol
Component type L-PEPTIDE LINKING
Nonstandard Parent Id LYS

Chemical features

Atom count 72
Chiral atom count 1
Chiral atoms CA
Observed leaving atoms OXT H2 HXT
Bond count 72
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) N~6~-[(2E,4Z,6E,8E)-3,7-dimethyl-9-(2,6,6-trimethylcyclohex-1-en-1-yl)nona-2,4,6,8-tetraen-1-yl]-L-lysine
Systematic name (OpenEye OEToolkits) (2S)-2-amino-6-[[(2E,4Z,6E)-3,7-dimethyl-9-(2,6,6-trimethyl-1-cyclohexenyl)nona-2,4,6,8-tetraenyl]amino]hexanoic acid

Chemical Descriptors

Stereo SMILES (CACTVS) CC1=C(\C=C\C(C)=C\C=C/C(C)=C/CNCCCC[C@H](N)C(O)=O)C(C)(C)CCC1
SMILES (CACTVS) CC1=C(C=CC(C)=CC=CC(C)=CCNCCCC[CH](N)C(O)=O)C(C)(C)CCC1
Stereo SMILES (OpenEye) CC1=C(C(CCC1)(C)C)C=C/C(=C/C=C\C(=C\CNCCCC[C@@H](C(=O)O)N)\C)/C
InChI descriptor InChI=1S/C26H42N2O2/c1-20(14-15-23-22(3)12-9-17-26(23,4)5)10-8-11-21(2)16-19-28-18-7-6-13-24(27)25(29)30/h8,10-11,14-16,24,28H,6-7,9,12-13,17-19,27H2,1-5H3,(H,29,30)/b11-8-,15-14+,20-10+,21-16+/t24-/m0/s1
InChIKey descriptor FSIGCSBKSBDRLV-GGOCYBHBSA-N

Status Information

Last modified 2011-06-04
Created 2005-03-17
Release status REL
Processing site RCSB