PDB Chemical Component LYN
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for LYN
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.490 |
1.470 |
| N |
H |
0.979 |
1.009 |
| N |
H2 |
1.021 |
1.009 |
| CA |
CB |
1.530 |
1.530 |
| CA |
C |
1.530 |
1.507 |
| CA |
HA |
1.080 |
1.090 |
| CB |
CG |
1.530 |
1.530 |
| CB |
HB2 |
1.080 |
1.090 |
| CB |
HB3 |
1.081 |
1.090 |
| CG |
CD |
1.530 |
1.529 |
| CG |
HG2 |
1.080 |
1.089 |
| CG |
HG3 |
1.080 |
1.089 |
| CD |
CE |
1.530 |
1.530 |
| CD |
HD2 |
1.079 |
1.089 |
| CD |
HD3 |
1.081 |
1.090 |
| CE |
NZ |
1.490 |
1.469 |
| CE |
HE2 |
1.079 |
1.090 |
| CE |
HE3 |
1.080 |
1.090 |
| NZ |
HZ1 |
1.039 |
1.009 |
| NZ |
HZ2 |
1.041 |
1.010 |
| NZ |
HZ3 |
1.039 |
1.008 |
| C |
O |
1.215 |
1.213 |
| C |
NT |
1.305 |
1.348 |
| NT |
HNT1 |
0.980 |
0.970 |
| NT |
HNT2 |
0.980 |
0.970 |
Bond Angles for LYN
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
119.9 |
106.7 |
| CA |
N |
H2 |
112.2 |
106.7 |
| N |
CA |
CB |
109.4 |
109.4 |
| N |
CA |
C |
109.4 |
109.5 |
| N |
CA |
HA |
109.4 |
109.5 |
| H |
N |
H2 |
117.1 |
106.7 |
| CB |
CA |
C |
109.5 |
109.5 |
| CB |
CA |
HA |
109.5 |
109.5 |
| CA |
CB |
CG |
109.5 |
109.5 |
| CA |
CB |
HB2 |
109.5 |
109.5 |
| CA |
CB |
HB3 |
109.5 |
109.4 |
| C |
CA |
HA |
109.5 |
109.5 |
| CA |
C |
O |
120.9 |
120.0 |
| CA |
C |
NT |
119.2 |
120.0 |
| CG |
CB |
HB2 |
109.4 |
109.5 |
| CG |
CB |
HB3 |
109.5 |
109.5 |
| CB |
CG |
CD |
109.5 |
109.4 |
| CB |
CG |
HG2 |
109.5 |
109.4 |
| CB |
CG |
HG3 |
109.4 |
109.4 |
| HB2 |
CB |
HB3 |
109.5 |
109.5 |
| CD |
CG |
HG2 |
109.4 |
109.5 |
| CD |
CG |
HG3 |
109.6 |
109.5 |
| CG |
CD |
CE |
109.5 |
109.4 |
| CG |
CD |
HD2 |
109.5 |
109.5 |
| CG |
CD |
HD3 |
109.4 |
109.5 |
| HG2 |
CG |
HG3 |
109.5 |
109.5 |
| CE |
CD |
HD2 |
109.3 |
109.5 |
| CE |
CD |
HD3 |
109.5 |
109.4 |
| CD |
CE |
NZ |
109.5 |
109.5 |
| CD |
CE |
HE2 |
109.5 |
109.5 |
| CD |
CE |
HE3 |
109.4 |
109.4 |
| HD2 |
CD |
HD3 |
109.5 |
109.5 |
| NZ |
CE |
HE2 |
109.5 |
109.5 |
| NZ |
CE |
HE3 |
109.5 |
109.5 |
| CE |
NZ |
HZ1 |
109.5 |
109.5 |
| CE |
NZ |
HZ2 |
109.4 |
109.4 |
| CE |
NZ |
HZ3 |
109.5 |
109.5 |
| HE2 |
CE |
HE3 |
109.5 |
109.5 |
| HZ1 |
NZ |
HZ2 |
109.6 |
109.4 |
| HZ1 |
NZ |
HZ3 |
109.3 |
109.5 |
| HZ2 |
NZ |
HZ3 |
109.5 |
109.5 |
| O |
C |
NT |
119.9 |
120.0 |
| C |
NT |
HNT1 |
120.0 |
120.0 |
| C |
NT |
HNT2 |
120.0 |
120.0 |
| HNT1 |
NT |
HNT2 |
120.0 |
120.0 |
Torsion Angles for LYN
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
216.7 |
246.3 |
| CB |
CA |
N |
C |
240.0 |
240.0 |
| CB |
CA |
N |
HA |
120.0 |
120.0 |
| N |
CA |
CB |
CG |
296.9 |
295.0 |
| N |
CA |
CB |
HB2 |
177.0 |
55.0 |
| N |
CA |
CB |
HB3 |
57.1 |
175.0 |
| C |
CA |
N |
HA |
240.0 |
240.0 |
| N |
CA |
C |
O |
206.4 |
340.0 |
| N |
CA |
C |
NT |
26.5 |
160.0 |
| CA |
N |
H |
H2 |
141.6 |
113.8 |
| H |
N |
CA |
CB |
271.5 |
300.0 |
| H |
N |
CA |
C |
31.5 |
60.0 |
| H |
N |
CA |
HA |
151.5 |
180.0 |
| CA |
N |
H2 |
H |
215.6 |
246.2 |
| H2 |
N |
CA |
CB |
54.8 |
53.8 |
| H2 |
N |
CA |
C |
174.8 |
173.8 |
| H2 |
N |
CA |
HA |
294.8 |
293.8 |
| CB |
CA |
N |
H |
271.5 |
300.0 |
| CB |
CA |
N |
H2 |
54.8 |
53.8 |
| N |
CA |
CB |
C |
120.0 |
120.0 |
| N |
CA |
CB |
HA |
240.1 |
240.0 |
| C |
CA |
CB |
HA |
120.1 |
120.0 |
| CB |
CA |
C |
O |
326.3 |
99.9 |
| CB |
CA |
C |
NT |
146.4 |
280.0 |
| CG |
CB |
CA |
HB2 |
119.9 |
240.0 |
| CG |
CB |
CA |
HB3 |
239.9 |
120.0 |
| CA |
CB |
CG |
CD |
204.9 |
180.0 |
| CA |
CB |
CG |
HG2 |
85.0 |
300.0 |
| CA |
CB |
CG |
HG3 |
325.0 |
60.0 |
| HB2 |
CB |
CA |
HB3 |
120.0 |
240.0 |
| C |
CA |
N |
H |
31.5 |
60.0 |
| C |
CA |
N |
H2 |
174.8 |
173.8 |
| N |
CA |
C |
CB |
240.0 |
240.0 |
| N |
CA |
C |
HA |
119.9 |
120.0 |
| CB |
CA |
C |
HA |
239.9 |
240.0 |
| C |
CA |
CB |
CG |
177.0 |
175.0 |
| C |
CA |
CB |
HB2 |
57.1 |
295.0 |
| C |
CA |
CB |
HB3 |
297.1 |
55.0 |
| O |
C |
CA |
NT |
179.9 |
179.9 |
| CA |
C |
NT |
HNT1 |
359.9 |
360.0 |
| CA |
C |
NT |
HNT2 |
179.9 |
180.0 |
| HA |
CA |
N |
H |
151.5 |
180.0 |
| HA |
CA |
N |
H2 |
294.8 |
293.8 |
| N |
CA |
HA |
CB |
119.9 |
120.0 |
| N |
CA |
HA |
C |
240.1 |
240.0 |
| CB |
CA |
HA |
C |
120.1 |
120.0 |
| HA |
CA |
CB |
CG |
56.9 |
55.0 |
| HA |
CA |
CB |
HB2 |
297.0 |
175.0 |
| HA |
CA |
CB |
HB3 |
177.0 |
295.0 |
| HA |
CA |
C |
O |
86.4 |
220.0 |
| HA |
CA |
C |
NT |
266.5 |
40.0 |
| CG |
CB |
CA |
C |
177.0 |
175.0 |
| CG |
CB |
CA |
HA |
56.9 |
55.0 |
| CA |
CB |
CG |
HB2 |
240.0 |
120.0 |
| CA |
CB |
CG |
HB3 |
120.1 |
240.1 |
| HB2 |
CB |
CG |
HB3 |
240.0 |
120.0 |
| CD |
CG |
CB |
HG2 |
119.9 |
240.0 |
| CD |
CG |
CB |
HG3 |
239.9 |
120.0 |
| CB |
CG |
CD |
CE |
93.4 |
180.0 |
| CB |
CG |
CD |
HD2 |
333.5 |
300.0 |
| CB |
CG |
CD |
HD3 |
213.4 |
60.0 |
| HG2 |
CG |
CB |
HG3 |
119.9 |
240.0 |
| HB2 |
CB |
CA |
C |
57.1 |
295.0 |
| HB2 |
CB |
CA |
HA |
297.0 |
175.0 |
| CA |
CB |
HB2 |
CG |
120.0 |
240.0 |
| CA |
CB |
HB2 |
HB3 |
240.0 |
119.9 |
| CG |
CB |
HB2 |
HB3 |
120.0 |
240.0 |
| HB2 |
CB |
CG |
CD |
324.9 |
60.0 |
| HB2 |
CB |
CG |
HG2 |
204.9 |
180.0 |
| HB2 |
CB |
CG |
HG3 |
85.0 |
300.0 |
| HB3 |
CB |
CA |
C |
297.1 |
55.0 |
| HB3 |
CB |
CA |
HA |
177.0 |
295.0 |
| CA |
CB |
HB3 |
CG |
239.9 |
120.0 |
| CA |
CB |
HB3 |
HB2 |
120.0 |
240.0 |
| CG |
CB |
HB3 |
HB2 |
240.1 |
120.0 |
| HB3 |
CB |
CG |
CD |
84.8 |
300.0 |
| HB3 |
CB |
CG |
HG2 |
324.9 |
60.0 |
| HB3 |
CB |
CG |
HG3 |
205.0 |
180.0 |
| CD |
CG |
CB |
HB2 |
324.9 |
60.0 |
| CD |
CG |
CB |
HB3 |
84.8 |
300.0 |
| CB |
CG |
CD |
HG2 |
240.0 |
120.0 |
| CB |
CG |
CD |
HG3 |
120.0 |
240.0 |
| HG2 |
CG |
CD |
HG3 |
240.0 |
120.1 |
| CE |
CD |
CG |
HD2 |
119.9 |
240.0 |
| CE |
CD |
CG |
HD3 |
240.0 |
120.0 |
| CG |
CD |
CE |
NZ |
204.6 |
180.0 |
| CG |
CD |
CE |
HE2 |
84.5 |
300.0 |
| CG |
CD |
CE |
HE3 |
324.5 |
60.0 |
| HD2 |
CD |
CG |
HD3 |
120.1 |
240.0 |
| HG2 |
CG |
CB |
HB2 |
204.9 |
180.0 |
| HG2 |
CG |
CB |
HB3 |
324.9 |
60.0 |
| CB |
CG |
HG2 |
CD |
120.0 |
240.0 |
| CB |
CG |
HG2 |
HG3 |
240.1 |
120.0 |
| CD |
CG |
HG2 |
HG3 |
120.1 |
239.9 |
| HG2 |
CG |
CD |
CE |
213.4 |
60.0 |
| HG2 |
CG |
CD |
HD2 |
93.5 |
180.0 |
| HG2 |
CG |
CD |
HD3 |
333.4 |
300.1 |
| HG3 |
CG |
CB |
HB2 |
85.0 |
300.0 |
| HG3 |
CG |
CB |
HB3 |
205.0 |
180.0 |
| CB |
CG |
HG3 |
CD |
239.9 |
120.0 |
| CB |
CG |
HG3 |
HG2 |
119.9 |
240.1 |
| CD |
CG |
HG3 |
HG2 |
240.1 |
120.1 |
| HG3 |
CG |
CD |
CE |
333.4 |
300.0 |
| HG3 |
CG |
CD |
HD2 |
213.5 |
59.9 |
| HG3 |
CG |
CD |
HD3 |
93.4 |
180.0 |
| CE |
CD |
CG |
HG2 |
213.4 |
60.0 |
| CE |
CD |
CG |
HG3 |
333.4 |
300.0 |
| CG |
CD |
CE |
HD2 |
240.0 |
120.0 |
| CG |
CD |
CE |
HD3 |
120.0 |
240.0 |
| HD2 |
CD |
CE |
HD3 |
240.0 |
120.0 |
| NZ |
CE |
CD |
HE2 |
120.0 |
240.0 |
| NZ |
CE |
CD |
HE3 |
240.0 |
120.0 |
| CD |
CE |
NZ |
HZ1 |
185.7 |
300.0 |
| CD |
CE |
NZ |
HZ2 |
65.6 |
60.0 |
| CD |
CE |
NZ |
HZ3 |
305.6 |
180.0 |
| HE2 |
CE |
CD |
HE3 |
120.0 |
240.0 |
| HD2 |
CD |
CG |
HG2 |
93.5 |
180.0 |
| HD2 |
CD |
CG |
HG3 |
213.5 |
59.9 |
| CG |
CD |
HD2 |
CE |
120.0 |
240.0 |
| CG |
CD |
HD2 |
HD3 |
240.0 |
120.1 |
| CE |
CD |
HD2 |
HD3 |
120.0 |
240.0 |
| HD2 |
CD |
CE |
NZ |
324.6 |
60.0 |
| HD2 |
CD |
CE |
HE2 |
204.5 |
180.0 |
| HD2 |
CD |
CE |
HE3 |
84.5 |
300.0 |
| HD3 |
CD |
CG |
HG2 |
333.4 |
300.1 |
| HD3 |
CD |
CG |
HG3 |
93.4 |
180.0 |
| CG |
CD |
HD3 |
CE |
240.0 |
120.0 |
| CG |
CD |
HD3 |
HD2 |
120.1 |
240.0 |
| CE |
CD |
HD3 |
HD2 |
240.1 |
120.0 |
| HD3 |
CD |
CE |
NZ |
84.6 |
300.0 |
| HD3 |
CD |
CE |
HE2 |
324.5 |
60.0 |
| HD3 |
CD |
CE |
HE3 |
204.5 |
180.0 |
| NZ |
CE |
CD |
HD2 |
324.6 |
60.0 |
| NZ |
CE |
CD |
HD3 |
84.6 |
300.0 |
| CD |
CE |
NZ |
HE2 |
239.9 |
120.0 |
| CD |
CE |
NZ |
HE3 |
119.9 |
240.0 |
| HE2 |
CE |
NZ |
HE3 |
240.0 |
120.0 |
| HZ1 |
NZ |
CE |
HZ2 |
120.1 |
240.0 |
| HZ1 |
NZ |
CE |
HZ3 |
240.2 |
120.1 |
| HZ2 |
NZ |
CE |
HZ3 |
120.1 |
240.0 |
| HE2 |
CE |
CD |
HD2 |
204.5 |
180.0 |
| HE2 |
CE |
CD |
HD3 |
324.5 |
60.0 |
| CD |
CE |
HE2 |
NZ |
120.0 |
240.0 |
| CD |
CE |
HE2 |
HE3 |
240.0 |
120.0 |
| NZ |
CE |
HE2 |
HE3 |
120.0 |
240.0 |
| HE2 |
CE |
NZ |
HZ1 |
305.8 |
180.0 |
| HE2 |
CE |
NZ |
HZ2 |
185.7 |
300.0 |
| HE2 |
CE |
NZ |
HZ3 |
65.6 |
60.0 |
| HE3 |
CE |
CD |
HD2 |
84.5 |
300.0 |
| HE3 |
CE |
CD |
HD3 |
204.5 |
180.0 |
| CD |
CE |
HE3 |
NZ |
240.0 |
120.0 |
| CD |
CE |
HE3 |
HE2 |
120.0 |
240.0 |
| NZ |
CE |
HE3 |
HE2 |
240.0 |
120.0 |
| HE3 |
CE |
NZ |
HZ1 |
65.8 |
60.0 |
| HE3 |
CE |
NZ |
HZ2 |
305.7 |
180.0 |
| HE3 |
CE |
NZ |
HZ3 |
185.6 |
299.9 |
| HZ1 |
NZ |
CE |
HE2 |
305.8 |
180.0 |
| HZ1 |
NZ |
CE |
HE3 |
65.8 |
60.0 |
| CE |
NZ |
HZ1 |
HZ2 |
240.0 |
120.0 |
| CE |
NZ |
HZ1 |
HZ3 |
120.0 |
239.9 |
| HZ2 |
NZ |
HZ1 |
HZ3 |
240.0 |
120.0 |
| HZ2 |
NZ |
CE |
HE2 |
185.7 |
300.0 |
| HZ2 |
NZ |
CE |
HE3 |
305.7 |
180.0 |
| CE |
NZ |
HZ2 |
HZ1 |
120.1 |
240.0 |
| CE |
NZ |
HZ2 |
HZ3 |
239.9 |
120.0 |
| HZ1 |
NZ |
HZ2 |
HZ3 |
119.9 |
240.0 |
| HZ3 |
NZ |
CE |
HE2 |
65.6 |
60.0 |
| HZ3 |
NZ |
CE |
HE3 |
185.6 |
299.9 |
| CE |
NZ |
HZ3 |
HZ1 |
240.0 |
120.1 |
| CE |
NZ |
HZ3 |
HZ2 |
120.0 |
240.0 |
| HZ1 |
NZ |
HZ3 |
HZ2 |
240.0 |
120.0 |
| O |
C |
CA |
HA |
86.4 |
220.0 |
| CA |
C |
O |
NT |
180.1 |
180.1 |
| O |
C |
NT |
HNT1 |
180.0 |
180.0 |
| O |
C |
NT |
HNT2 |
0.0 |
0.0 |
| NT |
C |
CA |
HA |
266.5 |
40.0 |
| CA |
C |
NT |
O |
179.9 |
179.9 |
| HNT1 |
NT |
C |
HNT2 |
180.0 |
180.0 |
| C |
NT |
HNT1 |
HNT2 |
180.0 |
180.0 |
| C |
NT |
HNT2 |
HNT1 |
180.0 |
180.0 |