PDB Chemical Component LYL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for LYL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.391 |
1.386 |
| C1 |
C3 |
1.395 |
1.381 |
| C1 |
C4 |
1.510 |
1.507 |
| C2 |
C5 |
1.402 |
1.387 |
| C2 |
O6 |
1.379 |
1.359 |
| C3 |
C7 |
1.399 |
1.383 |
| C3 |
HC3 |
1.103 |
1.079 |
| C4 |
C13 |
1.513 |
1.506 |
| C4 |
HC41 |
1.115 |
1.090 |
| C4 |
HC42 |
1.115 |
1.090 |
| C5 |
C15 |
1.508 |
1.507 |
| C5 |
C8 |
1.392 |
1.381 |
| C15 |
H151 |
1.115 |
1.089 |
| C15 |
H152 |
1.115 |
1.090 |
| C15 |
H153 |
1.115 |
1.090 |
| O6 |
HO6 |
0.950 |
0.966 |
| C7 |
C8 |
1.393 |
1.383 |
| C7 |
HC7 |
1.103 |
1.080 |
| C8 |
HC8 |
1.103 |
1.080 |
| C13 |
C14 |
1.346 |
1.310 |
| C13 |
H13 |
1.103 |
1.080 |
| C14 |
H141 |
1.103 |
1.080 |
| C14 |
H142 |
1.103 |
1.079 |
Bond Angles for LYL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C3 |
120.8 |
120.0 |
| C2 |
C1 |
C4 |
118.6 |
120.0 |
| C1 |
C2 |
C5 |
119.2 |
119.9 |
| C1 |
C2 |
O6 |
115.7 |
120.1 |
| C3 |
C1 |
C4 |
120.6 |
120.0 |
| C1 |
C3 |
C7 |
119.7 |
120.0 |
| C1 |
C3 |
HC3 |
120.0 |
120.1 |
| C1 |
C4 |
C13 |
110.6 |
109.5 |
| C1 |
C4 |
HC41 |
111.8 |
109.5 |
| C1 |
C4 |
HC42 |
111.8 |
109.5 |
| C5 |
C2 |
O6 |
125.1 |
120.0 |
| C2 |
C5 |
C15 |
124.7 |
120.0 |
| C2 |
C5 |
C8 |
120.0 |
120.0 |
| C2 |
O6 |
HO6 |
115.7 |
106.8 |
| C7 |
C3 |
HC3 |
120.3 |
120.0 |
| C3 |
C7 |
C8 |
119.6 |
120.2 |
| C3 |
C7 |
HC7 |
120.4 |
119.9 |
| C13 |
C4 |
HC41 |
111.8 |
109.5 |
| C13 |
C4 |
HC42 |
111.8 |
109.5 |
| C4 |
C13 |
C14 |
119.6 |
120.0 |
| C4 |
C13 |
H13 |
125.9 |
120.0 |
| HC41 |
C4 |
HC42 |
98.6 |
109.4 |
| C15 |
C5 |
C8 |
115.2 |
120.0 |
| C5 |
C15 |
H151 |
106.8 |
109.5 |
| C5 |
C15 |
H152 |
124.7 |
109.5 |
| C5 |
C15 |
H153 |
106.8 |
109.5 |
| C5 |
C8 |
C7 |
120.5 |
120.0 |
| C5 |
C8 |
HC8 |
119.7 |
120.0 |
| H151 |
C15 |
H152 |
106.8 |
109.5 |
| H151 |
C15 |
H153 |
102.8 |
109.4 |
| H152 |
C15 |
H153 |
106.8 |
109.4 |
| C8 |
C7 |
HC7 |
120.0 |
119.9 |
| C7 |
C8 |
HC8 |
119.8 |
120.0 |
| C14 |
C13 |
H13 |
114.5 |
120.0 |
| C13 |
C14 |
H141 |
119.6 |
120.0 |
| C13 |
C14 |
H142 |
114.5 |
120.0 |
| H141 |
C14 |
H142 |
125.9 |
120.0 |
Torsion Angles for LYL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C3 |
C1 |
C2 |
C4 |
177.8 |
180.2 |
| C2 |
C1 |
C3 |
C7 |
359.6 |
359.8 |
| C2 |
C1 |
C3 |
HC3 |
179.6 |
179.8 |
| C2 |
C1 |
C4 |
C13 |
294.5 |
270.2 |
| C2 |
C1 |
C4 |
HC41 |
169.2 |
30.3 |
| C2 |
C1 |
C4 |
HC42 |
59.7 |
150.2 |
| C5 |
C2 |
C1 |
O6 |
180.9 |
180.5 |
| C1 |
C2 |
C5 |
C15 |
180.6 |
179.8 |
| C1 |
C2 |
C5 |
C8 |
358.8 |
359.5 |
| C1 |
C2 |
O6 |
HO6 |
180.0 |
89.9 |
| C2 |
C1 |
C3 |
C4 |
182.3 |
179.8 |
| C3 |
C1 |
C2 |
C5 |
0.4 |
0.5 |
| C3 |
C1 |
C2 |
O6 |
179.5 |
180.0 |
| C3 |
C1 |
C4 |
C13 |
116.7 |
90.0 |
| C3 |
C1 |
C4 |
HC41 |
351.4 |
210.1 |
| C3 |
C1 |
C4 |
HC42 |
242.0 |
330.0 |
| C7 |
C3 |
C1 |
HC3 |
180.0 |
180.0 |
| C1 |
C3 |
C7 |
C8 |
1.2 |
0.0 |
| C1 |
C3 |
C7 |
HC7 |
181.2 |
180.0 |
| C2 |
C1 |
C4 |
C3 |
177.8 |
180.2 |
| C4 |
C1 |
C2 |
C5 |
182.6 |
180.3 |
| C4 |
C1 |
C2 |
O6 |
1.7 |
359.8 |
| C4 |
C1 |
C3 |
C7 |
177.3 |
180.0 |
| C4 |
C1 |
C3 |
HC3 |
357.3 |
360.0 |
| C13 |
C4 |
C1 |
HC41 |
125.3 |
240.0 |
| C13 |
C4 |
C1 |
HC42 |
234.7 |
120.0 |
| C1 |
C4 |
C13 |
C14 |
176.3 |
120.0 |
| C1 |
C4 |
C13 |
H13 |
356.3 |
299.9 |
| HC41 |
C4 |
C1 |
HC42 |
109.5 |
240.1 |
| C5 |
C2 |
C1 |
C3 |
0.4 |
0.5 |
| C5 |
C2 |
C1 |
C4 |
182.6 |
180.3 |
| C1 |
C2 |
C5 |
O6 |
179.0 |
179.5 |
| C5 |
C2 |
O6 |
HO6 |
359.1 |
269.4 |
| C15 |
C5 |
C2 |
C8 |
181.9 |
180.3 |
| C2 |
C5 |
C15 |
H151 |
54.8 |
269.7 |
| C2 |
C5 |
C15 |
H152 |
180.0 |
29.7 |
| C2 |
C5 |
C15 |
H153 |
305.3 |
149.7 |
| C2 |
C5 |
C8 |
C7 |
2.1 |
0.3 |
| C2 |
C5 |
C8 |
HC8 |
182.1 |
180.3 |
| O6 |
C2 |
C1 |
C3 |
179.5 |
180.0 |
| O6 |
C2 |
C1 |
C4 |
1.7 |
359.8 |
| C1 |
C2 |
O6 |
C5 |
180.9 |
180.5 |
| O6 |
C2 |
C5 |
C15 |
1.6 |
0.3 |
| O6 |
C2 |
C5 |
C8 |
179.7 |
180.0 |
| C7 |
C3 |
C1 |
C4 |
177.3 |
180.0 |
| C1 |
C3 |
C7 |
HC3 |
180.0 |
180.0 |
| C5 |
C8 |
C7 |
C3 |
357.9 |
359.9 |
| C8 |
C7 |
C3 |
HC7 |
180.0 |
180.0 |
| C3 |
C7 |
C8 |
HC8 |
177.9 |
180.0 |
| HC3 |
C3 |
C1 |
C4 |
357.3 |
360.0 |
| C1 |
C3 |
HC3 |
C7 |
180.0 |
180.0 |
| HC3 |
C3 |
C7 |
C8 |
181.3 |
180.0 |
| HC3 |
C3 |
C7 |
HC7 |
1.3 |
0.0 |
| C1 |
C4 |
C13 |
HC41 |
234.7 |
120.0 |
| C1 |
C4 |
C13 |
HC42 |
125.3 |
240.0 |
| HC41 |
C4 |
C13 |
HC42 |
250.5 |
120.0 |
| C14 |
C13 |
C4 |
H13 |
180.0 |
180.1 |
| C4 |
C13 |
C14 |
H141 |
180.0 |
180.0 |
| C4 |
C13 |
C14 |
H142 |
0.0 |
360.0 |
| C1 |
C4 |
HC41 |
C13 |
124.6 |
240.0 |
| C1 |
C4 |
HC41 |
HC42 |
242.3 |
120.0 |
| C13 |
C4 |
HC41 |
HC42 |
117.7 |
240.0 |
| HC41 |
C4 |
C13 |
C14 |
301.5 |
0.0 |
| HC41 |
C4 |
C13 |
H13 |
121.6 |
179.9 |
| C1 |
C4 |
HC42 |
C13 |
235.4 |
120.0 |
| C1 |
C4 |
HC42 |
HC41 |
117.7 |
240.0 |
| C13 |
C4 |
HC42 |
HC41 |
242.3 |
120.0 |
| HC42 |
C4 |
C13 |
C14 |
51.0 |
240.0 |
| HC42 |
C4 |
C13 |
H13 |
231.0 |
60.0 |
| C15 |
C5 |
C2 |
O6 |
1.6 |
0.3 |
| C2 |
C5 |
C15 |
C8 |
178.2 |
179.7 |
| C15 |
C5 |
C8 |
C7 |
180.4 |
180.0 |
| C15 |
C5 |
C8 |
HC8 |
0.4 |
360.0 |
| H151 |
C15 |
C5 |
H152 |
234.8 |
239.9 |
| H151 |
C15 |
C5 |
H153 |
109.5 |
120.0 |
| H152 |
C15 |
C5 |
H153 |
234.7 |
240.1 |
| C8 |
C5 |
C2 |
O6 |
179.7 |
180.0 |
| C2 |
C5 |
C8 |
C15 |
181.7 |
180.3 |
| C3 |
C7 |
C8 |
C5 |
357.9 |
359.9 |
| C8 |
C5 |
C15 |
H151 |
236.5 |
90.0 |
| C8 |
C5 |
C15 |
H152 |
1.8 |
210.1 |
| C8 |
C5 |
C15 |
H153 |
127.1 |
330.0 |
| C5 |
C8 |
C7 |
HC7 |
177.9 |
179.9 |
| C7 |
C8 |
C5 |
HC8 |
180.0 |
180.0 |
| H151 |
C15 |
C5 |
C8 |
236.5 |
90.0 |
| C5 |
C15 |
H151 |
H152 |
135.5 |
120.0 |
| C5 |
C15 |
H151 |
H153 |
247.7 |
240.0 |
| H152 |
C15 |
H151 |
H153 |
112.2 |
120.0 |
| H152 |
C15 |
C5 |
C8 |
1.8 |
210.1 |
| C5 |
C15 |
H152 |
H151 |
234.7 |
239.9 |
| C5 |
C15 |
H152 |
H153 |
125.3 |
120.0 |
| H151 |
C15 |
H152 |
H153 |
250.6 |
240.0 |
| H153 |
C15 |
C5 |
C8 |
127.1 |
330.0 |
| C5 |
C15 |
H153 |
H151 |
112.3 |
120.0 |
| C5 |
C15 |
H153 |
H152 |
224.5 |
240.0 |
| H151 |
C15 |
H153 |
H152 |
112.2 |
120.0 |
| C8 |
C7 |
C3 |
HC3 |
181.3 |
180.0 |
| C3 |
C7 |
C8 |
HC7 |
180.0 |
180.0 |
| C5 |
C8 |
C7 |
HC8 |
180.0 |
180.0 |
| HC7 |
C7 |
C3 |
HC3 |
1.3 |
0.0 |
| C3 |
C7 |
HC7 |
C8 |
180.0 |
180.0 |
| HC7 |
C7 |
C8 |
HC8 |
357.9 |
360.0 |
| C5 |
C8 |
HC8 |
C7 |
180.0 |
180.0 |
| HC8 |
C8 |
C7 |
HC7 |
357.9 |
360.0 |
| C14 |
C13 |
C4 |
HC41 |
301.5 |
0.0 |
| C14 |
C13 |
C4 |
HC42 |
51.0 |
240.0 |
| C4 |
C13 |
C14 |
H13 |
180.0 |
179.9 |
| H141 |
C14 |
C13 |
H142 |
180.0 |
180.0 |
| H13 |
C13 |
C4 |
HC41 |
121.6 |
179.9 |
| H13 |
C13 |
C4 |
HC42 |
231.0 |
60.0 |
| C4 |
C13 |
H13 |
C14 |
180.0 |
180.1 |
| H13 |
C13 |
C14 |
H141 |
360.0 |
0.0 |
| H13 |
C13 |
C14 |
H142 |
180.0 |
180.0 |
| H141 |
C14 |
C13 |
H13 |
360.0 |
0.0 |
| C13 |
C14 |
H141 |
H142 |
180.0 |
180.0 |
| H142 |
C14 |
C13 |
H13 |
180.0 |
180.0 |
| C13 |
C14 |
H142 |
H141 |
180.0 |
180.0 |