PDB Chemical Component LYK
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for LYK
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CA |
C |
1.524 |
1.530 |
| C |
O |
1.233 |
1.429 |
| C |
OXT |
1.547 |
1.428 |
| CA |
N |
1.451 |
1.469 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| O |
HO |
0.950 |
0.967 |
| CB |
CA |
1.528 |
1.530 |
| CA |
HA |
1.100 |
1.090 |
| CG |
CB |
1.522 |
1.530 |
| CB |
HB |
1.100 |
1.090 |
| CB |
HBA |
1.100 |
1.090 |
| CE |
CD |
1.524 |
1.530 |
| CD |
CG |
1.528 |
1.530 |
| CD |
HD |
1.100 |
1.090 |
| CD |
HDA |
1.100 |
1.089 |
| NZ |
CE |
1.493 |
1.470 |
| CE |
HE |
1.101 |
1.089 |
| CE |
HEA |
1.100 |
1.090 |
| CG |
HG |
1.100 |
1.090 |
| CG |
HGA |
1.100 |
1.090 |
| NZ |
HNZ |
1.000 |
1.009 |
| NZ |
HNZA |
0.999 |
1.008 |
| OXT |
HXT |
0.950 |
0.967 |
| C |
H1 |
1.099 |
1.090 |
Bond Angles for LYK
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
C |
OXT |
124.4 |
109.5 |
| CA |
C |
H1 |
86.3 |
109.5 |
| O |
C |
OXT |
93.4 |
109.5 |
| C |
O |
HO |
109.5 |
114.0 |
| O |
C |
H1 |
120.9 |
109.4 |
| C |
OXT |
HXT |
109.5 |
114.1 |
| OXT |
C |
H1 |
115.4 |
109.5 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.4 |
111.0 |
| H |
N |
H2 |
109.5 |
111.0 |
| CB |
CA |
HA |
109.0 |
109.5 |
| CG |
CB |
HB |
108.2 |
109.5 |
| CG |
CB |
HBA |
108.2 |
109.5 |
| HB |
CB |
HBA |
110.7 |
109.4 |
| CE |
CD |
CG |
111.0 |
109.4 |
| CE |
CD |
HD |
108.9 |
109.4 |
| CE |
CD |
HDA |
108.9 |
109.5 |
| CG |
CD |
HD |
109.0 |
109.5 |
| CG |
CD |
HDA |
109.0 |
109.5 |
| CD |
CG |
HG |
108.7 |
109.5 |
| CD |
CG |
HGA |
108.7 |
109.4 |
| HD |
CD |
HDA |
110.0 |
109.5 |
| NZ |
CE |
HE |
108.4 |
109.5 |
| NZ |
CE |
HEA |
108.4 |
109.4 |
| HE |
CE |
HEA |
110.5 |
109.5 |
| HG |
CG |
HGA |
110.2 |
109.5 |
| HNZ |
NZ |
HNZA |
109.4 |
111.0 |
Torsion Angles for LYK
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
CA |
OXT |
117.9 |
120.0 |
| CA |
C |
O |
HO |
180.0 |
180.0 |
| O |
C |
CA |
H1 |
236.3 |
240.1 |
| CA |
C |
OXT |
HXT |
180.0 |
60.0 |
| OXT |
C |
CA |
H1 |
118.5 |
120.1 |
| CA |
C |
O |
OXT |
226.9 |
240.0 |
| CA |
C |
O |
H1 |
104.6 |
120.0 |
| O |
C |
OXT |
HXT |
50.5 |
300.0 |
| OXT |
C |
O |
H1 |
237.7 |
240.0 |
| CA |
C |
OXT |
H1 |
256.2 |
240.0 |
| OXT |
C |
O |
HO |
313.1 |
300.0 |
| O |
C |
OXT |
H1 |
126.7 |
120.0 |
| N |
CA |
C |
OXT |
27.5 |
305.0 |
| N |
CA |
C |
H1 |
269.1 |
185.0 |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| CA |
N |
H2 |
H |
240.0 |
236.0 |
| HO |
O |
C |
OXT |
313.1 |
300.0 |
| HO |
O |
C |
H1 |
75.4 |
60.0 |
| CB |
CA |
C |
OXT |
149.8 |
65.1 |
| CB |
CA |
C |
H1 |
31.4 |
305.0 |
| CB |
CA |
N |
H |
57.6 |
176.0 |
| CB |
CA |
N |
H2 |
177.6 |
300.0 |
| HA |
CA |
C |
OXT |
268.9 |
185.1 |
| HA |
CA |
C |
H1 |
150.5 |
65.0 |
| HA |
CA |
N |
H |
298.5 |
56.1 |
| HA |
CA |
N |
H2 |
58.5 |
180.0 |
| CG |
CB |
CA |
HA |
55.4 |
55.0 |
| HB |
CB |
CG |
HBA |
120.0 |
119.9 |
| HB |
CB |
CA |
HA |
175.4 |
175.0 |
| CG |
CB |
HB |
HBA |
241.6 |
240.0 |
| HBA |
CB |
CA |
HA |
295.4 |
294.9 |
| CG |
CB |
HBA |
HB |
118.4 |
120.0 |
| CG |
CD |
CE |
HD |
240.0 |
240.0 |
| CG |
CD |
CE |
HDA |
120.0 |
120.0 |
| CE |
CD |
CG |
HG |
61.6 |
60.0 |
| CE |
CD |
CG |
HGA |
301.6 |
300.0 |
| HD |
CD |
CE |
HDA |
240.0 |
240.0 |
| CD |
CG |
CB |
HB |
50.7 |
60.0 |
| CD |
CG |
CB |
HBA |
290.7 |
300.1 |
| CE |
CD |
CG |
HD |
120.0 |
119.9 |
| CE |
CD |
CG |
HDA |
240.0 |
240.0 |
| HD |
CD |
CG |
HDA |
120.0 |
120.0 |
| HG |
CG |
CD |
HGA |
120.0 |
120.0 |
| CE |
CD |
HD |
CG |
238.8 |
240.1 |
| CE |
CD |
HD |
HDA |
119.3 |
120.0 |
| CG |
CD |
HD |
HDA |
240.6 |
240.0 |
| HD |
CD |
CG |
HG |
301.6 |
300.1 |
| HD |
CD |
CG |
HGA |
181.6 |
180.0 |
| CE |
CD |
HDA |
CG |
121.2 |
120.0 |
| CE |
CD |
HDA |
HD |
240.7 |
240.0 |
| CG |
CD |
HDA |
HD |
119.4 |
120.0 |
| HDA |
CD |
CG |
HG |
181.6 |
180.0 |
| HDA |
CD |
CG |
HGA |
61.6 |
60.0 |
| NZ |
CE |
CD |
HD |
304.5 |
300.0 |
| NZ |
CE |
CD |
HDA |
64.5 |
60.0 |
| HE |
CE |
NZ |
HEA |
120.0 |
120.0 |
| HE |
CE |
CD |
CG |
304.5 |
300.0 |
| HE |
CE |
CD |
HD |
64.5 |
60.0 |
| HE |
CE |
CD |
HDA |
184.5 |
180.0 |
| NZ |
CE |
HE |
HEA |
241.3 |
240.0 |
| HEA |
CE |
CD |
CG |
64.5 |
60.1 |
| HEA |
CE |
CD |
HD |
184.5 |
180.0 |
| HEA |
CE |
CD |
HDA |
304.5 |
300.0 |
| NZ |
CE |
HEA |
HE |
118.7 |
120.0 |
| HG |
CG |
CB |
HB |
170.7 |
180.0 |
| HG |
CG |
CB |
HBA |
50.7 |
60.0 |
| HG |
CG |
CD |
HD |
301.6 |
300.1 |
| HG |
CG |
CD |
HDA |
181.6 |
180.0 |
| CD |
CG |
HG |
HGA |
241.0 |
240.0 |
| HGA |
CG |
CB |
HB |
290.6 |
300.0 |
| HGA |
CG |
CB |
HBA |
170.7 |
180.1 |
| HGA |
CG |
CD |
HD |
181.6 |
180.0 |
| HGA |
CG |
CD |
HDA |
61.6 |
60.0 |
| CD |
CG |
HGA |
HG |
119.0 |
120.0 |
| HNZ |
NZ |
CE |
HE |
60.0 |
296.0 |
| HNZ |
NZ |
CE |
HEA |
300.0 |
176.0 |
| HNZA |
NZ |
CE |
HE |
180.0 |
60.0 |
| HNZA |
NZ |
CE |
HEA |
60.0 |
300.0 |
| HXT |
OXT |
C |
H1 |
283.9 |
180.0 |
| CA |
C |
H1 |
OXT |
126.6 |
120.0 |
| O |
C |
H1 |
OXT |
248.9 |
240.0 |
| H1 |
C |
O |
HO |
75.4 |
60.0 |
| H1 |
C |
OXT |
HXT |
283.9 |
180.0 |