PDB Chemical Component LYH
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for LYH
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.457 |
1.468 |
| CA |
C |
1.511 |
1.507 |
| CA |
CB |
1.545 |
1.507 |
| C |
O |
1.233 |
1.208 |
| C |
OXT |
1.348 |
1.343 |
| CB |
CG |
1.352 |
1.310 |
| CG |
CD |
1.505 |
1.507 |
| CD |
CE |
1.571 |
1.531 |
| CE |
NZ |
1.475 |
1.469 |
| N |
H |
0.999 |
1.009 |
| N |
H2 |
0.999 |
1.008 |
| CA |
HA |
1.100 |
1.090 |
| CB |
HB |
1.080 |
1.080 |
| CG |
HG |
1.080 |
1.080 |
| CD |
HD1 |
1.100 |
1.090 |
| CD |
HD2 |
1.100 |
1.089 |
| CE |
HE1 |
1.100 |
1.089 |
| CE |
HE2 |
1.100 |
1.090 |
| NZ |
HZ1 |
1.000 |
1.008 |
| NZ |
HZ2 |
1.000 |
1.009 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for LYH
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
CA |
C |
114.1 |
109.5 |
| N |
CA |
CB |
112.6 |
109.5 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.1 |
| N |
CA |
HA |
102.0 |
109.5 |
| C |
CA |
CB |
102.4 |
109.4 |
| CA |
C |
O |
121.2 |
120.0 |
| CA |
C |
OXT |
113.2 |
120.0 |
| C |
CA |
HA |
112.3 |
109.4 |
| CA |
CB |
CG |
120.7 |
120.0 |
| CB |
CA |
HA |
113.9 |
109.5 |
| CA |
CB |
HB |
119.7 |
120.0 |
| O |
C |
OXT |
125.5 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| CB |
CG |
CD |
127.1 |
120.0 |
| CG |
CB |
HB |
119.7 |
120.0 |
| CB |
CG |
HG |
116.5 |
120.0 |
| CG |
CD |
CE |
109.5 |
109.5 |
| CD |
CG |
HG |
116.4 |
120.0 |
| CG |
CD |
HD1 |
109.5 |
109.5 |
| CG |
CD |
HD2 |
109.5 |
109.5 |
| CD |
CE |
NZ |
111.8 |
109.4 |
| CE |
CD |
HD1 |
109.4 |
109.5 |
| CE |
CD |
HD2 |
109.4 |
109.5 |
| CD |
CE |
HE1 |
108.7 |
109.5 |
| CD |
CE |
HE2 |
108.7 |
109.4 |
| NZ |
CE |
HE1 |
108.7 |
109.5 |
| NZ |
CE |
HE2 |
108.7 |
109.4 |
| CE |
NZ |
HZ1 |
109.5 |
111.0 |
| CE |
NZ |
HZ2 |
109.5 |
111.0 |
| H |
N |
H2 |
109.5 |
111.0 |
| HD1 |
CD |
HD2 |
109.5 |
109.5 |
| HE1 |
CE |
HE2 |
110.2 |
109.5 |
| HZ1 |
NZ |
HZ2 |
109.5 |
111.0 |
Torsion Angles for LYH
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C |
CA |
N |
CB |
116.2 |
120.0 |
| N |
CA |
C |
O |
359.6 |
340.0 |
| N |
CA |
C |
OXT |
178.4 |
160.0 |
| C |
CA |
N |
HA |
238.6 |
240.0 |
| N |
CA |
CB |
CG |
75.3 |
245.0 |
| CB |
CA |
N |
HA |
122.5 |
120.0 |
| N |
CA |
CB |
HB |
255.3 |
65.0 |
| H |
N |
CA |
H2 |
240.0 |
236.1 |
| N |
CA |
C |
CB |
238.1 |
240.0 |
| C |
CA |
N |
H |
180.0 |
296.0 |
| C |
CA |
N |
H2 |
300.0 |
60.0 |
| N |
CA |
C |
HA |
115.5 |
120.0 |
| C |
CA |
CB |
CG |
312.3 |
125.0 |
| CB |
CA |
C |
HA |
237.4 |
240.0 |
| C |
CA |
CB |
HB |
132.3 |
305.0 |
| O |
C |
CA |
OXT |
181.2 |
179.9 |
| CA |
C |
OXT |
HXT |
181.3 |
180.0 |
| N |
CA |
CB |
C |
123.0 |
120.0 |
| CB |
CA |
N |
H |
63.8 |
176.1 |
| CB |
CA |
N |
H2 |
183.9 |
300.0 |
| N |
CA |
CB |
HA |
244.5 |
239.9 |
| CB |
CA |
C |
O |
121.5 |
100.0 |
| CB |
CA |
C |
OXT |
300.3 |
280.0 |
| C |
CA |
CB |
HA |
121.5 |
119.9 |
| CA |
CB |
CG |
CD |
176.8 |
180.0 |
| CG |
CB |
CA |
HB |
180.0 |
180.1 |
| CA |
CB |
CG |
HG |
356.8 |
359.9 |
| O |
C |
CA |
CB |
121.5 |
100.0 |
| CA |
C |
O |
OXT |
178.6 |
180.1 |
| O |
C |
CA |
HA |
244.1 |
219.9 |
| O |
C |
OXT |
HXT |
0.0 |
0.0 |
| OXT |
C |
CA |
CB |
300.3 |
280.0 |
| CA |
C |
OXT |
O |
181.3 |
179.9 |
| OXT |
C |
CA |
HA |
62.9 |
40.0 |
| CG |
CB |
CA |
HA |
190.9 |
5.1 |
| CA |
CB |
CG |
HB |
180.0 |
179.9 |
| CB |
CG |
CD |
CE |
237.6 |
125.0 |
| CD |
CG |
CB |
HG |
180.0 |
180.0 |
| CB |
CG |
CD |
HD1 |
357.6 |
244.9 |
| CB |
CG |
CD |
HD2 |
117.6 |
5.0 |
| CD |
CG |
CB |
HB |
356.9 |
0.0 |
| CB |
CG |
CD |
HG |
180.0 |
180.0 |
| CG |
CD |
CE |
NZ |
83.6 |
180.0 |
| CE |
CD |
CG |
HD1 |
240.0 |
240.0 |
| CE |
CD |
CG |
HD2 |
120.0 |
120.0 |
| CG |
CD |
CE |
HE1 |
203.6 |
300.0 |
| CG |
CD |
CE |
HE2 |
323.6 |
60.1 |
| HD1 |
CD |
CG |
HD2 |
240.0 |
240.0 |
| CE |
CD |
CG |
HG |
57.6 |
305.0 |
| CG |
CD |
CE |
HD1 |
120.0 |
120.0 |
| CG |
CD |
CE |
HD2 |
240.0 |
240.0 |
| NZ |
CE |
CD |
HE1 |
240.0 |
240.0 |
| NZ |
CE |
CD |
HE2 |
120.0 |
119.9 |
| CD |
CE |
NZ |
HZ1 |
180.0 |
56.1 |
| CD |
CE |
NZ |
HZ2 |
300.0 |
180.0 |
| HD1 |
CD |
CE |
HD2 |
120.0 |
120.0 |
| HE1 |
CE |
CD |
HE2 |
240.0 |
240.0 |
| NZ |
CE |
CD |
HD1 |
323.6 |
60.0 |
| NZ |
CE |
CD |
HD2 |
203.6 |
300.0 |
| CD |
CE |
NZ |
HE1 |
120.0 |
120.0 |
| CD |
CE |
NZ |
HE2 |
240.0 |
240.1 |
| HE1 |
CE |
NZ |
HE2 |
120.0 |
120.1 |
| HZ1 |
NZ |
CE |
HZ2 |
240.0 |
236.1 |
| H |
N |
CA |
C |
180.0 |
296.0 |
| H |
N |
CA |
CB |
63.8 |
176.1 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| H |
N |
CA |
HA |
301.4 |
56.0 |
| H2 |
N |
CA |
C |
300.0 |
60.0 |
| H2 |
N |
CA |
CB |
183.9 |
300.0 |
| CA |
N |
H2 |
H |
240.0 |
236.1 |
| H2 |
N |
CA |
HA |
61.4 |
179.9 |
| N |
CA |
HA |
C |
237.4 |
240.0 |
| N |
CA |
HA |
CB |
121.6 |
120.1 |
| HA |
CA |
N |
H |
301.4 |
56.0 |
| HA |
CA |
N |
H2 |
61.4 |
179.9 |
| C |
CA |
HA |
CB |
244.2 |
240.1 |
| HA |
CA |
C |
O |
244.1 |
219.9 |
| HA |
CA |
C |
OXT |
62.9 |
40.0 |
| HA |
CA |
CB |
CG |
190.9 |
5.1 |
| HA |
CA |
CB |
HB |
10.9 |
185.0 |
| CA |
CB |
HB |
CG |
180.0 |
180.1 |
| HB |
CB |
CA |
HA |
10.9 |
185.0 |
| HB |
CB |
CG |
CD |
356.9 |
0.0 |
| HB |
CB |
CG |
HG |
176.8 |
180.0 |
| CB |
CG |
HG |
CD |
180.0 |
180.0 |
| HG |
CG |
CB |
HB |
176.8 |
180.0 |
| HG |
CG |
CD |
CE |
57.6 |
305.0 |
| HG |
CG |
CD |
HD1 |
177.6 |
65.0 |
| HG |
CG |
CD |
HD2 |
297.6 |
185.0 |
| CG |
CD |
HD1 |
CE |
239.9 |
240.0 |
| HD1 |
CD |
CG |
HG |
177.6 |
65.0 |
| CG |
CD |
HD1 |
HD2 |
120.0 |
120.0 |
| HD1 |
CD |
CE |
NZ |
323.6 |
60.0 |
| CE |
CD |
HD1 |
HD2 |
240.1 |
240.0 |
| HD1 |
CD |
CE |
HE1 |
83.6 |
180.0 |
| HD1 |
CD |
CE |
HE2 |
203.6 |
300.1 |
| CG |
CD |
HD2 |
CE |
120.0 |
120.0 |
| HD2 |
CD |
CG |
HG |
297.6 |
185.0 |
| CG |
CD |
HD2 |
HD1 |
240.0 |
240.0 |
| HD2 |
CD |
CE |
NZ |
203.6 |
300.0 |
| CE |
CD |
HD2 |
HD1 |
120.0 |
120.0 |
| HD2 |
CD |
CE |
HE1 |
323.6 |
60.0 |
| HD2 |
CD |
CE |
HE2 |
83.6 |
180.1 |
| CD |
CE |
HE1 |
NZ |
238.1 |
240.0 |
| HE1 |
CE |
CD |
HD1 |
83.6 |
180.0 |
| HE1 |
CE |
CD |
HD2 |
323.6 |
60.0 |
| CD |
CE |
HE1 |
HE2 |
119.0 |
120.0 |
| NZ |
CE |
HE1 |
HE2 |
241.0 |
240.0 |
| HE1 |
CE |
NZ |
HZ1 |
60.0 |
296.1 |
| HE1 |
CE |
NZ |
HZ2 |
180.0 |
60.0 |
| CD |
CE |
HE2 |
NZ |
121.9 |
119.9 |
| HE2 |
CE |
CD |
HD1 |
203.6 |
300.1 |
| HE2 |
CE |
CD |
HD2 |
83.6 |
180.1 |
| CD |
CE |
HE2 |
HE1 |
241.0 |
240.0 |
| NZ |
CE |
HE2 |
HE1 |
119.0 |
120.1 |
| HE2 |
CE |
NZ |
HZ1 |
300.0 |
176.0 |
| HE2 |
CE |
NZ |
HZ2 |
60.0 |
299.9 |
| HZ1 |
NZ |
CE |
HE1 |
60.0 |
296.1 |
| HZ1 |
NZ |
CE |
HE2 |
300.0 |
176.0 |
| CE |
NZ |
HZ1 |
HZ2 |
120.0 |
123.9 |
| HZ2 |
NZ |
CE |
HE1 |
180.0 |
60.0 |
| HZ2 |
NZ |
CE |
HE2 |
60.0 |
299.9 |
| CE |
NZ |
HZ2 |
HZ1 |
239.9 |
236.1 |