PDB Chemical Component LYG
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for LYG
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C15 |
C1 |
1.533 |
1.543 |
| O1 |
C1 |
1.411 |
1.430 |
| C1 |
C2 |
1.543 |
1.543 |
| C1 |
H1 |
1.100 |
1.091 |
| C4 |
N1 |
1.457 |
1.469 |
| C15 |
N1 |
1.490 |
1.485 |
| N1 |
C3 |
1.514 |
1.486 |
| O1 |
HO1 |
0.950 |
0.967 |
| S1 |
C12 |
1.698 |
1.758 |
| S1 |
C13 |
1.719 |
1.755 |
| C9 |
CL1 |
1.726 |
1.735 |
| C3 |
C2 |
1.545 |
1.544 |
| C2 |
H2 |
1.100 |
1.090 |
| C2 |
H2A |
1.100 |
1.090 |
| C6 |
N2 |
1.395 |
1.361 |
| C5 |
N2 |
1.298 |
1.298 |
| O2 |
C14 |
1.217 |
1.219 |
| C3 |
H3 |
1.100 |
1.090 |
| C3 |
H3A |
1.100 |
1.091 |
| C14 |
N3 |
1.364 |
1.348 |
| N3 |
C5 |
1.365 |
1.357 |
| N3 |
HN3 |
1.000 |
0.971 |
| C5 |
C4 |
1.474 |
1.507 |
| C4 |
H4 |
1.100 |
1.090 |
| C4 |
H4A |
1.100 |
1.090 |
| C13 |
C6 |
1.362 |
1.378 |
| C7 |
C6 |
1.429 |
1.468 |
| C12 |
C7 |
1.394 |
1.391 |
| C7 |
C8 |
1.364 |
1.412 |
| C9 |
C8 |
1.383 |
1.373 |
| C8 |
H8 |
1.080 |
1.080 |
| C10 |
C9 |
1.370 |
1.389 |
| C11 |
C10 |
1.372 |
1.374 |
| C10 |
H10 |
1.080 |
1.080 |
| C11 |
C12 |
1.360 |
1.401 |
| C11 |
H11 |
1.080 |
1.080 |
| C14 |
C13 |
1.418 |
1.423 |
| C15 |
H15 |
1.100 |
1.091 |
| C15 |
H15A |
1.100 |
1.090 |
Bond Angles for LYG
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C15 |
C1 |
H1 |
112.0 |
110.3 |
| O1 |
C1 |
C2 |
101.5 |
110.3 |
| O1 |
C1 |
H1 |
118.8 |
110.3 |
| C2 |
C1 |
H1 |
112.3 |
110.3 |
| C1 |
C2 |
H2 |
112.7 |
110.3 |
| C1 |
C2 |
H2A |
112.7 |
110.3 |
| N1 |
C3 |
C2 |
90.2 |
104.6 |
| N1 |
C3 |
H3 |
116.5 |
110.5 |
| N1 |
C3 |
H3A |
116.5 |
110.4 |
| C12 |
S1 |
C13 |
95.3 |
92.8 |
| S1 |
C12 |
C7 |
108.9 |
110.5 |
| S1 |
C12 |
C11 |
122.5 |
129.8 |
| S1 |
C13 |
C6 |
108.8 |
111.0 |
| C3 |
C2 |
H2 |
112.7 |
110.3 |
| C3 |
C2 |
H2A |
112.7 |
110.4 |
| H2 |
C2 |
H2A |
106.1 |
110.3 |
| O2 |
C14 |
N3 |
122.8 |
120.7 |
| O2 |
C14 |
C13 |
125.7 |
120.6 |
| H3 |
C3 |
H3A |
101.7 |
110.4 |
| C14 |
N3 |
HN3 |
119.3 |
119.9 |
| C5 |
N3 |
HN3 |
119.3 |
120.0 |
| N3 |
C5 |
C4 |
111.7 |
119.1 |
| C5 |
C4 |
H4 |
104.8 |
109.5 |
| C5 |
C4 |
H4A |
104.8 |
109.5 |
| H4 |
C4 |
H4A |
113.7 |
109.4 |
| C7 |
C8 |
H8 |
122.8 |
119.8 |
| C9 |
C8 |
H8 |
122.9 |
119.9 |
| C11 |
C10 |
H10 |
120.3 |
119.9 |
| C12 |
C11 |
H11 |
123.5 |
119.8 |
| H15 |
C15 |
H15A |
103.7 |
110.5 |
Torsion Angles for LYG
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1 |
C1 |
C15 |
H1 |
128.0 |
122.2 |
| C2 |
C1 |
C15 |
H1 |
234.8 |
241.1 |
| C15 |
C1 |
C2 |
H2 |
86.1 |
118.8 |
| C15 |
C1 |
C2 |
H2A |
206.1 |
241.0 |
| C15 |
C1 |
O1 |
H1 |
236.4 |
237.8 |
| C2 |
C1 |
O1 |
H1 |
123.7 |
122.1 |
| O1 |
C1 |
C2 |
H2 |
193.1 |
237.9 |
| O1 |
C1 |
C2 |
H2A |
313.2 |
0.1 |
| C15 |
C1 |
C2 |
H1 |
125.0 |
118.9 |
| O1 |
C1 |
C2 |
H1 |
232.0 |
238.0 |
| N1 |
C3 |
C2 |
C1 |
49.7 |
23.9 |
| C3 |
C2 |
C1 |
H2 |
240.0 |
241.1 |
| C3 |
C2 |
C1 |
H2A |
120.0 |
119.0 |
| H2 |
C2 |
C1 |
H2A |
240.0 |
237.8 |
| O1 |
C1 |
H1 |
C2 |
118.1 |
122.1 |
| H1 |
C1 |
C2 |
H2 |
321.1 |
359.9 |
| H1 |
C1 |
C2 |
H2A |
81.1 |
122.1 |
| C4 |
N1 |
C3 |
H3 |
269.5 |
319.7 |
| C4 |
N1 |
C3 |
H3A |
29.5 |
82.1 |
| N1 |
C15 |
C1 |
H1 |
124.7 |
95.0 |
| C15 |
N1 |
C3 |
H3 |
61.8 |
79.3 |
| C15 |
N1 |
C3 |
H3A |
181.8 |
201.7 |
| N1 |
C3 |
C2 |
H2 |
289.7 |
265.0 |
| N1 |
C3 |
C2 |
H2A |
169.7 |
142.8 |
| H3 |
C3 |
N1 |
H3A |
240.0 |
237.6 |
| HO1 |
O1 |
C1 |
C2 |
67.2 |
61.4 |
| HO1 |
O1 |
C1 |
H1 |
303.6 |
299.3 |
| C12 |
S1 |
C13 |
C6 |
359.4 |
359.9 |
| S1 |
C12 |
C11 |
H11 |
0.1 |
0.1 |
| C13 |
S1 |
C12 |
C7 |
1.3 |
0.0 |
| C13 |
S1 |
C12 |
C11 |
180.1 |
180.0 |
| O2 |
C14 |
C13 |
S1 |
1.7 |
359.9 |
| C3 |
C2 |
C1 |
H1 |
201.1 |
241.1 |
| C1 |
C2 |
C3 |
H2 |
120.0 |
118.9 |
| C1 |
C2 |
C3 |
H2A |
240.0 |
241.1 |
| N1 |
C3 |
C2 |
H3 |
120.0 |
118.9 |
| N1 |
C3 |
C2 |
H3A |
240.0 |
241.2 |
| H2 |
C2 |
C3 |
H2A |
120.0 |
122.2 |
| H2 |
C2 |
C1 |
H1 |
321.1 |
359.9 |
| C1 |
C2 |
H2 |
H2A |
123.7 |
122.2 |
| C3 |
C2 |
H2 |
H2A |
236.2 |
237.7 |
| H2A |
C2 |
C1 |
H1 |
81.1 |
122.1 |
| C1 |
C2 |
H2A |
H2 |
236.2 |
237.8 |
| C3 |
C2 |
H2A |
H2 |
123.7 |
122.2 |
| S1 |
C13 |
C6 |
N2 |
180.9 |
180.0 |
| O2 |
C14 |
N3 |
HN3 |
357.5 |
0.0 |
| N1 |
C3 |
H3 |
C2 |
255.4 |
244.8 |
| N1 |
C3 |
H3 |
H3A |
127.7 |
122.4 |
| H3 |
C3 |
C2 |
H2 |
169.7 |
146.2 |
| H3 |
C3 |
C2 |
H2A |
49.7 |
23.9 |
| N1 |
C3 |
H3A |
C2 |
104.6 |
115.2 |
| N1 |
C3 |
H3A |
H3 |
232.3 |
237.5 |
| H3A |
C3 |
C2 |
H2 |
49.7 |
23.8 |
| H3A |
C3 |
C2 |
H2A |
289.7 |
261.6 |
| O2 |
C14 |
N3 |
C13 |
178.3 |
180.0 |
| C5 |
N3 |
C14 |
HN3 |
180.0 |
179.9 |
| O2 |
C14 |
N3 |
C5 |
177.5 |
180.0 |
| C14 |
N3 |
C5 |
HN3 |
180.0 |
180.1 |
| N3 |
C5 |
C4 |
H4 |
155.2 |
60.0 |
| N3 |
C5 |
C4 |
H4A |
35.2 |
300.0 |
| HN3 |
N3 |
C5 |
C4 |
4.4 |
360.0 |
| C4 |
C5 |
N3 |
HN3 |
4.4 |
360.0 |
| H4 |
C4 |
C5 |
H4A |
120.0 |
120.0 |
| C5 |
C4 |
H4 |
H4A |
246.1 |
240.0 |
| C5 |
C4 |
H4A |
H4 |
113.9 |
120.0 |
| O2 |
C14 |
C13 |
C6 |
180.9 |
180.1 |
| S1 |
C12 |
C7 |
C6 |
358.4 |
360.0 |
| S1 |
C13 |
C6 |
C7 |
359.7 |
0.1 |
| C7 |
C12 |
S1 |
C13 |
1.3 |
0.0 |
| S1 |
C12 |
C7 |
C11 |
178.7 |
180.0 |
| C12 |
C7 |
C8 |
H8 |
180.8 |
180.0 |
| S1 |
C12 |
C7 |
C8 |
178.7 |
180.0 |
| C9 |
C8 |
C7 |
H8 |
180.0 |
180.0 |
| C7 |
C8 |
C9 |
H8 |
180.0 |
180.0 |
| C10 |
C9 |
C8 |
H8 |
179.8 |
180.0 |
| S1 |
C12 |
C11 |
C10 |
180.1 |
180.0 |
| C11 |
C12 |
S1 |
C13 |
180.1 |
180.0 |
| S1 |
C12 |
C11 |
C7 |
181.4 |
180.0 |
| C12 |
C11 |
C10 |
H10 |
181.8 |
180.1 |
| H11 |
C11 |
C10 |
H10 |
1.8 |
359.9 |
| O2 |
C14 |
C13 |
N3 |
181.7 |
180.0 |
| C13 |
C14 |
N3 |
HN3 |
179.2 |
180.0 |
| H15 |
C15 |
C1 |
H1 |
244.7 |
213.8 |
| H15A |
C15 |
C1 |
H1 |
4.7 |
336.3 |