PDB Chemical Component LY5

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for LY5

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
F1	C15	1.297	1.399
C15	F2	1.334	1.399
C15	C16	1.538	1.544
C15	C14	1.535	1.552
C16	N2	1.478	1.475
C14	C12	1.525	1.548
N2	C12	1.478	1.479
N2	C11	1.462	1.469
C5	C2	1.526	1.532
C5	C6	1.539	1.531
C5	C4	1.532	1.531
C2	C1	1.540	1.531
C7	C6	1.542	1.529
C7	C11	1.525	1.530
C7	C8	1.530	1.530
C12	C13	1.532	1.507
C9	C4	1.552	1.529
C9	C8	1.541	1.529
C4	C3	1.519	1.530
O1	C10	1.278	1.208
O4	C13	1.232	1.208
C13	O3	1.227	1.343
C1	C10	1.500	1.507
C1	N1	1.497	1.469
C10	O2	1.238	1.342
C3	N1	1.502	1.468
C14	H141	1.101	1.090
C14	H142	1.100	1.089
C12	H12	1.100	1.090
O3	HO3	0.950	0.966
C16	H161	1.100	1.091
C16	H162	1.100	1.090
C11	H111	1.101	1.090
C11	H112	1.100	1.090
C7	H7	1.100	1.090
C6	H61	1.100	1.090
C6	H62	1.100	1.090
C8	H81	1.100	1.091
C8	H82	1.100	1.090
C9	H91	1.099	1.090
C9	H92	1.100	1.090
C4	H4	1.100	1.090
C5	H5	1.100	1.090
C3	H31	1.100	1.090
C3	H32	1.100	1.090
N1	HN1	1.000	1.009
C1	H1	1.100	1.090
C2	H21	1.100	1.090
C2	H22	1.100	1.090
O2	HO2	0.950	0.967

Bond Angles for LY5

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
F1	C15	C16	111.6	110.7
F1	C15	C14	113.8	110.9
C14	C15	C16	104.6	103.0
C15	C16	N2	106.2	107.2
C15	C16	H161	110.3	109.9
C15	C16	H162	110.3	109.9
C15	C14	C12	100.7	101.7
C15	C14	H141	111.6	110.9
C15	C14	H142	111.6	111.0
C16	N2	C11	113.9	111.0
N2	C16	H161	110.3	109.9
N2	C16	H162	110.3	109.9
C14	C12	C13	117.6	110.4
C12	C14	H141	111.6	111.0
C12	C14	H142	111.6	111.1
C14	C12	H12	107.6	110.4
N2	C12	H12	108.2	110.5
N2	C11	H111	108.9	109.5
N2	C11	H112	108.9	109.5
C5	C2	C1	114.4	109.2
C2	C5	H5	108.6	109.6
C5	C2	H21	108.2	109.6
C5	C2	H22	108.2	109.6
C5	C6	H61	108.8	109.4
C5	C6	H62	108.8	109.5
C5	C4	C3	112.8	109.3
C5	C4	H4	106.5	109.2
C2	C1	C10	110.9	109.5
C2	C1	H1	108.8	109.4
C6	C7	C8	108.7	109.4
C6	C7	H7	110.1	109.5
C7	C6	H61	108.8	109.5
C7	C6	H62	108.8	109.5
C7	C11	H111	108.9	109.5
C7	C11	H112	108.9	109.4
C8	C7	H7	110.2	109.5
C7	C8	H81	109.6	109.5
C7	C8	H82	109.6	109.5
C12	C13	O3	120.0	120.0
C13	C12	H12	107.5	110.3
C9	C4	C3	113.2	109.8
C4	C9	H91	109.1	109.5
C4	C9	H92	109.1	109.4
C9	C4	H4	106.2	109.4
C9	C8	H81	109.6	109.5
C9	C8	H82	109.6	109.5
C4	C3	N1	109.4	109.5
C3	C4	H4	106.6	109.4
C4	C3	H31	109.5	109.5
C4	C3	H32	109.5	109.5
O1	C10	O2	122.2	120.1
O4	C13	O3	117.4	120.0
C13	O3	HO3	109.5	117.0
C1	C10	O2	120.5	120.0
C10	C1	H1	109.3	109.5
C1	N1	HN1	108.7	111.0
C10	O2	HO2	109.5	117.0
N1	C3	H31	109.5	109.5
N1	C3	H32	109.5	109.5
C3	N1	HN1	108.7	111.0
H141	C14	H142	109.5	110.9
H161	C16	H162	109.5	110.0
H111	C11	H112	109.5	109.5
H61	C6	H62	109.5	109.5
H81	C8	H82	109.5	109.4
H91	C9	H92	109.5	109.4
H31	C3	H32	109.5	109.4
H21	C2	H22	109.5	109.6

Torsion Angles for LY5

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C14	C15	F1	C16	241.8	246.3
F1	C15	C16	N2	223.0	219.1
F1	C15	C16	H161	342.5	338.6
F1	C15	C16	H162	103.5	99.8
F1	C15	C14	C12	155.9	154.1
F1	C15	C14	H141	274.5	272.2
F1	C15	C14	H142	37.4	35.9
F1	C15	C16	C14	236.5	241.4
C16	C15	C14	C12	33.8	35.7
C16	C15	C14	H141	152.4	153.7
C16	C15	C14	H142	275.3	277.5
C15	C16	N2	C11	228.7	236.7
N2	C16	C15	H161	240.5	240.6
N2	C16	C15	H162	119.5	119.4
H161	C16	C15	H162	239.0	238.8
F1	C15	C14	C16	122.1	118.4
C14	C15	C16	N2	346.5	337.7
C14	C15	C16	H161	106.0	97.1
C14	C15	C16	H162	227.0	218.3
C15	C14	C12	C13	193.5	204.1
C12	C14	C15	H141	241.4	241.9
C12	C14	C15	H142	118.6	118.2
C15	C14	C12	H12	72.0	81.9
H141	C14	C15	H142	237.1	236.2
C15	C16	N2	H161	119.5	119.4
C15	C16	N2	H162	240.5	240.6
C16	N2	C12	H12	281.3	265.2
C16	N2	C11	H111	59.3	44.5
C16	N2	C11	H112	178.6	164.5
H161	C16	N2	H162	121.0	121.2
C12	C14	C15	C16	33.8	35.7
C15	C14	C12	H141	118.6	118.0
C15	C14	C12	H142	241.4	241.9
N2	C12	C14	H12	245.5	241.0
C14	C12	C13	O3	254.2	298.6
C13	C12	C14	H12	121.5	122.2
H141	C14	C12	H142	122.9	123.9
C15	C16	N2	C12	346.7	359.0
N2	C12	C14	H141	199.0	204.9
N2	C12	C14	H142	76.1	81.0
C14	C12	N2	H12	114.1	118.9
C13	C12	N2	H12	241.8	237.8
C11	N2	C16	H161	109.2	117.3
C11	N2	C16	H162	348.2	356.2
C11	N2	C12	H12	43.6	27.4
C7	C11	N2	H111	239.6	239.9
C7	C11	N2	H112	120.4	119.9
H111	C11	N2	H112	240.7	240.0
C2	C5	C6	H61	301.9	58.8
C2	C5	C6	H62	61.1	298.8
C2	C5	C4	C3	307.3	301.8
C2	C5	C4	H4	64.0	61.5
C5	C2	C1	C10	191.5	180.7
C5	C2	C1	H1	71.4	60.7
H21	C2	C5	H22	241.4	239.8
C5	C6	C7	H7	59.5	59.8
C7	C6	C5	H61	239.6	120.0
C7	C6	C5	H62	120.4	240.0
H61	C6	C5	H62	240.8	120.0
C4	C5	C6	H61	179.8	299.6
C4	C5	C6	H62	299.0	179.7
C9	C4	C5	C3	231.8	239.6
C5	C4	C9	H91	178.9	299.6
C5	C4	C9	H92	298.5	179.7
C9	C4	C5	H4	115.2	119.9
C5	C4	C3	N1	58.1	59.4
C3	C4	C5	H4	243.4	240.4
C5	C4	C3	H31	178.1	179.4
C5	C4	C3	H32	298.1	299.4
C1	C2	C5	H5	166.7	178.5
C5	C2	C1	H21	120.7	119.9
C5	C2	C1	H22	239.3	240.1
C2	C1	C10	O2	115.4	280.2
C10	C1	C2	H1	120.1	120.0
C2	C1	N1	HN1	174.8	185.6
C5	C6	C7	H61	120.4	240.0
C5	C6	C7	H62	239.6	120.0
C6	C7	C11	H111	158.4	174.7
C6	C7	C11	H112	39.1	54.6
C8	C7	C6	H7	239.2	240.0
C6	C7	C8	H81	179.1	180.2
C6	C7	C8	H82	299.3	300.2
H61	C6	C7	H62	119.2	240.0
N2	C11	C7	H111	120.4	120.0
N2	C11	C7	H112	239.7	240.1
H111	C11	C7	H112	119.3	120.0
C6	C7	C8	H7	120.8	120.0
C8	C7	C6	H61	178.2	59.8
C8	C7	C6	H62	59.0	179.8
C8	C7	C11	H111	40.7	54.7
C8	C7	C11	H112	281.4	294.7
C9	C8	C7	H81	240.1	240.0
C9	C8	C7	H82	119.9	120.1
H81	C8	C7	H82	239.8	240.0
C13	C12	C14	H141	74.9	86.1
C13	C12	C14	H142	312.1	322.2
C14	C12	C13	H12	238.5	237.7
N2	C12	C13	H12	118.6	122.3
O4	C13	C12	O3	184.1	179.9
C12	C13	O3	HO3	183.9	180.0
C5	C4	C9	C3	128.0	120.1
C5	C4	C9	H4	244.7	240.2
C4	C9	C8	H81	181.2	180.1
C4	C9	C8	H82	61.0	60.1
C9	C4	C3	N1	185.1	179.8
C3	C4	C9	H4	116.7	120.1
C9	C4	C3	H31	305.1	299.8
C9	C4	C3	H32	65.1	59.8
H91	C9	C4	H92	240.4	119.9
C9	C8	C7	H7	298.4	300.2
C7	C8	C9	H81	119.9	120.0
C7	C8	C9	H82	240.1	240.0
H81	C8	C9	H82	120.2	120.0
C5	C4	C3	H4	116.6	119.5
C3	C4	C9	H91	50.9	179.4
C3	C4	C9	H92	170.5	59.5
C9	C4	C3	H4	243.5	239.9
N1	C3	C4	H31	240.0	240.0
N1	C3	C4	H32	120.0	120.0
C4	C3	N1	HN1	180.7	174.4
H31	C3	C4	H32	240.0	240.0
C1	C10	O1	O2	178.8	180.1
O1	C10	C1	H1	56.4	220.0
O1	C10	O2	HO2	360.0	0.1
C12	C13	O4	O3	176.0	180.1
O4	C13	C12	H12	199.8	240.8
O4	C13	O3	HO3	360.0	0.1
O3	C13	C12	H12	15.7	60.8
C2	C1	C10	H1	240.2	240.1
O1	C10	C1	O2	181.2	179.9
C10	C1	N1	HN1	296.2	305.7
C1	C10	O2	HO2	181.2	180.0
C5	C2	C1	N1	310.9	300.8
C1	N1	C3	H31	181.2	178.5
C1	N1	C3	H32	61.2	58.5
C3	N1	C1	HN1	239.5	235.9
O2	C10	C1	H1	235.2	40.1
N1	C3	C4	H4	301.6	299.9
C4	C3	N1	H31	120.0	120.0
C4	C3	N1	H32	240.0	240.0
C1	N1	C3	HN1	120.5	124.1
H31	C3	N1	H32	120.0	120.0
H141	C14	C15	C16	152.4	153.7
C15	C14	H141	C12	248.2	247.8
C15	C14	H141	H142	124.1	123.8
H141	C14	C12	C13	74.9	86.1
C12	C14	H141	H142	235.9	236.1
H141	C14	C12	H12	313.5	323.8
H142	C14	C15	C16	275.3	277.5
C15	C14	H142	C12	111.9	112.3
C15	C14	H142	H141	235.9	236.2
H142	C14	C12	C13	312.1	322.2
C12	C14	H142	H141	124.1	123.9
H142	C14	C12	H12	190.6	200.0
C14	C12	H12	C13	127.6	122.3
H12	C12	C14	H141	313.5	323.8
H12	C12	C14	H142	190.6	200.0
H12	C12	C13	O3	15.7	60.8
C15	C16	H161	N2	243.1	242.2
C15	C16	H161	H162	121.5	121.2
H161	C16	N2	C11	109.2	117.3
N2	C16	H161	H162	238.5	238.9
C15	C16	H162	N2	116.9	117.8
C15	C16	H162	H161	238.5	238.9
H162	C16	N2	C11	348.2	356.2
N2	C16	H162	H161	121.5	121.1
N2	C11	H111	H112	118.9	120.0
C7	C11	H111	H112	241.0	240.0
N2	C11	H112	H111	241.0	240.0
C7	C11	H112	H111	119.0	120.0
C6	C7	H7	C8	240.1	240.0
H7	C7	C6	H61	299.0	179.8
H7	C7	C6	H62	179.9	299.8
H7	C7	C11	H111	282.8	294.7
H7	C7	C11	H112	163.5	174.7
H7	C7	C8	H81	58.3	60.2
H7	C7	C8	H82	178.5	180.2
C5	C6	H61	H62	118.8	240.0
H61	C6	C7	C8	178.2	59.8
H61	C6	C7	H7	299.0	179.8
C7	C6	H61	H62	241.3	120.0
C5	C6	H62	H61	241.2	119.9
H62	C6	C7	C8	59.0	179.8
H62	C6	C7	H7	179.9	299.8
C7	C6	H62	H61	118.7	240.0
H81	C8	C7	H7	58.3	60.2
C7	C8	H81	H82	120.3	120.0
C9	C8	H81	H82	239.7	239.9
H82	C8	C7	H7	178.5	180.2
C7	C8	H82	H81	239.7	240.0
C9	C8	H82	H81	120.3	120.0
H91	C9	C4	C3	50.9	179.4
C4	C9	H91	H92	119.3	240.1
H91	C9	C4	H4	294.2	59.4
H91	C9	C8	H81	61.0	300.1
H91	C9	C8	H82	300.8	180.1
H92	C9	C4	C3	170.5	59.5
C4	C9	H92	H91	240.6	119.9
H92	C9	C4	H4	53.8	299.5
H92	C9	C8	H81	301.4	60.1
H92	C9	C8	H82	181.2	300.0
C5	C4	H4	C3	239.3	240.4
C9	C4	H4	C3	121.0	120.3
H4	C4	C9	H91	294.2	59.4
H4	C4	C9	H92	53.8	299.5
H4	C4	C3	N1	301.6	299.9
H4	C4	C3	H31	61.5	59.9
H4	C4	C3	H32	181.6	179.9
H5	C5	C2	C1	166.7	178.5
H5	C5	C2	H21	287.4	298.4
H5	C5	C2	H22	46.0	58.6
H5	C5	C6	H61	62.5	178.8
H5	C5	C6	H62	181.7	58.8
H5	C5	C4	C3	188.4	181.6
H5	C5	C4	H4	305.1	301.2
C4	C3	H31	N1	240.1	240.0
H31	C3	C4	H4	61.5	59.9
C4	C3	H31	H32	120.0	120.0
N1	C3	H31	H32	240.0	240.0
H31	C3	N1	HN1	60.7	54.3
C4	C3	H32	N1	119.9	120.0
H32	C3	C4	H4	181.6	179.9
C4	C3	H32	H31	240.0	240.0
N1	C3	H32	H31	120.0	120.0
H32	C3	N1	HN1	300.7	294.4
HN1	N1	C3	H31	60.7	54.3
HN1	N1	C3	H32	300.7	294.4
C2	C1	H1	C10	121.1	120.0
H1	C1	C10	O2	235.2	40.1
H1	C1	N1	HN1	54.6	65.7
C5	C2	H21	C1	235.5	240.3
H21	C2	C5	H5	287.4	298.4
C5	C2	H21	H22	117.8	120.2
H21	C2	C1	C10	70.8	60.8
H21	C2	C1	H1	310.7	300.8
C5	C2	H22	C1	124.5	119.7
H22	C2	C5	H5	46.0	58.6
C5	C2	H22	H21	242.2	239.8
H22	C2	C1	C10	312.2	300.6
H22	C2	C1	H1	192.1	180.6