PDB Chemical Component LY0

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for LY0

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C2	P	1.827	1.823
O31	P	1.510	1.480
P	O32	1.565	1.609
P	C4	1.837	1.823
C1	C2	1.513	1.531
C1	H1	1.100	1.090
C1	H1A	1.100	1.090
C1	H1B	1.100	1.090
N1	C2	1.453	1.468
N1	HN1	1.000	1.009
N1	HN1A	1.000	1.009
C2	H2	1.100	1.090
C4	C5	1.502	1.531
C4	H4	1.100	1.090
C4	H4A	1.099	1.090
C5	C6	1.503	1.507
C5	C7	1.508	1.529
C5	H5	1.100	1.090
O62	C6	1.244	1.208
C6	O61	1.356	1.342
C7	H7	1.100	1.090
C7	H7A	1.100	1.090
C7	H7B	1.100	1.090
O32	HO32	0.950	0.967
O61	HO61	0.950	0.967

Bond Angles for LY0

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	P	O32	108.9	109.4
C2	P	C4	110.3	109.5
O31	P	O32	108.5	109.5
C4	P	O32	111.4	109.5
P	O32	HO32	109.5	114.1
P	C4	C5	115.4	109.4
P	C4	H4	107.5	109.5
P	C4	H4A	107.5	109.5
C2	C1	H1	109.5	109.4
C2	C1	H1A	109.4	109.5
C2	C1	H1B	109.4	109.4
C1	C2	N1	113.3	109.5
C1	C2	H2	104.1	109.4
H1	C1	H1A	109.5	109.5
H1	C1	H1B	109.5	109.5
H1A	C1	H1B	109.5	109.5
C2	N1	HN1	109.5	111.0
C2	N1	HN1A	109.5	111.0
N1	C2	H2	108.3	109.5
HN1	N1	HN1A	109.5	111.0
C5	C4	H4	107.5	109.4
C5	C4	H4A	107.5	109.5
C4	C5	C6	113.2	109.4
C4	C5	C7	114.6	109.5
C4	C5	H5	104.8	109.5
H4	C4	H4A	111.3	109.5
C6	C5	C7	114.5	109.5
C6	C5	H5	105.0	109.5
C5	C6	O61	119.1	120.0
C7	C5	H5	103.2	109.5
C5	C7	H7	109.5	109.5
C5	C7	H7A	109.5	109.5
C5	C7	H7B	109.5	109.5
C6	O61	HO61	109.5	117.1
H7	C7	H7A	109.5	109.4
H7	C7	H7B	109.5	109.5
H7A	C7	H7B	109.5	109.4

Torsion Angles for LY0

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O31	P	C2	O32	116.3	120.0
C4	P	C2	O32	237.5	240.0
C2	P	O32	HO32	114.3	300.0
C2	P	C4	C5	132.0	185.0
C2	P	C4	H4	252.1	305.0
C2	P	C4	H4A	12.0	65.0
C2	P	O31	O32	243.4	240.0
C4	P	O31	O32	123.4	120.0
O31	P	O32	HO32	0.0	180.0
O31	P	C4	H4	9.2	65.0
O31	P	C4	H4A	129.2	185.0
C2	P	O32	C4	238.2	240.0
O32	P	C4	C5	11.0	65.0
O32	P	C4	H4	131.1	185.0
O32	P	C4	H4A	251.0	305.1
C2	P	C4	O32	121.0	120.0
O31	P	C4	O32	238.2	240.0
C4	P	O32	HO32	236.1	60.0
C5	C4	P	H4	240.0	240.0
C5	C4	P	H4A	120.0	120.0
P	C4	C5	C6	46.7	165.0
P	C4	C5	C7	180.5	285.0
P	C4	C5	H5	292.8	45.0
H4	C4	P	H4A	240.0	239.9
C1	C2	P	O32	56.3	60.0
C1	C2	P	C4	293.8	300.0
H1	C1	C2	H1A	240.0	240.0
H1	C1	C2	H1B	120.0	120.0
H1A	C1	C2	H1B	240.0	240.0
C1	C2	N1	HN1	53.0	296.0
C1	C2	N1	HN1A	173.0	59.9
N1	C2	C1	H2	242.5	240.0
C2	C1	H1	H1A	120.0	120.0
C2	C1	H1	H1B	240.0	240.0
H1	C1	C2	N1	304.9	60.0
H1	C1	C2	H2	62.4	180.0
H1A	C1	H1	H1B	120.1	120.0
C2	C1	H1A	H1	240.0	240.0
C2	C1	H1A	H1B	120.0	120.0
H1A	C1	C2	N1	64.9	180.0
H1A	C1	C2	H2	182.4	300.0
H1	C1	H1A	H1B	240.0	240.0
C2	C1	H1B	H1	120.0	120.0
C2	C1	H1B	H1A	240.0	240.0
H1B	C1	C2	N1	184.9	300.0
H1B	C1	C2	H2	302.4	60.0
H1	C1	H1B	H1A	120.0	120.0
N1	C2	P	O32	289.2	300.0
N1	C2	P	C4	166.7	180.0
N1	C2	C1	H1	304.9	60.0
N1	C2	C1	H1A	64.9	180.0
N1	C2	C1	H1B	184.9	300.0
C1	C2	N1	H2	114.9	120.0
HN1	N1	C2	HN1A	240.0	236.1
C2	N1	HN1	HN1A	120.0	124.0
HN1	N1	C2	H2	298.1	176.0
C2	N1	HN1A	HN1	240.0	236.1
HN1A	N1	C2	H2	58.1	300.0
H2	C2	P	O32	171.3	180.0
H2	C2	P	C4	48.8	60.0
H2	C2	C1	H1	62.4	180.0
H2	C2	C1	H1A	182.4	300.0
H2	C2	C1	H1B	302.4	60.0
C1	C2	H2	N1	239.2	240.0
H2	C2	N1	HN1	298.1	176.0
H2	C2	N1	HN1A	58.1	300.0
C5	C4	P	O32	11.0	65.0
P	C4	C5	H4	120.0	120.0
P	C4	C5	H4A	240.0	240.0
H4	C4	C5	H4A	120.0	120.0
C6	C5	C4	C7	226.2	240.0
C6	C5	C4	H5	113.8	120.0
C4	C5	C6	O61	194.1	180.0
C7	C5	C4	H5	247.6	240.0
C4	C5	C7	H7	180.0	180.0
C4	C5	C7	H7A	300.0	300.0
C4	C5	C7	H7B	60.0	60.0
H4	C4	P	O32	131.1	185.0
P	C4	H4	C5	235.1	240.0
P	C4	H4	H4A	117.5	120.0
C5	C4	H4	H4A	242.4	240.0
H4	C4	C5	C6	286.7	45.0
H4	C4	C5	C7	60.5	165.0
H4	C4	C5	H5	172.8	285.0
H4A	C4	P	O32	251.0	305.1
P	C4	H4A	C5	124.9	120.0
P	C4	H4A	H4	242.5	239.9
C5	C4	H4A	H4	117.6	120.0
H4A	C4	C5	C6	166.7	285.0
H4A	C4	C5	C7	300.5	45.0
H4A	C4	C5	H5	52.8	165.0
C6	C5	C4	H4	286.7	45.0
C6	C5	C4	H4A	166.7	285.0
C4	C5	C6	C7	133.9	120.0
C4	C5	C6	H5	246.3	240.0
C7	C5	C6	H5	112.4	120.0
C6	C5	C7	H7	313.2	300.0
C6	C5	C7	H7A	73.2	60.0
C6	C5	C7	H7B	193.2	180.0
C5	C6	O61	HO61	179.0	180.0
C7	C5	C4	H4	60.5	165.0
C7	C5	C4	H4A	300.5	45.0
C4	C5	C7	C6	226.8	240.0
C4	C5	C7	H5	113.3	120.0
C6	C5	C7	H5	246.5	240.0
C7	C5	C6	O61	60.3	60.0
H7	C7	C5	H7A	240.0	240.0
H7	C7	C5	H7B	120.0	120.0
H7A	C7	C5	H7B	240.0	240.0
H5	C5	C4	H4	172.8	285.0
H5	C5	C4	H4A	52.8	165.0
C4	C5	H5	C6	119.5	120.0
C4	C5	H5	C7	239.7	240.0
C6	C5	H5	C7	120.2	120.0
H5	C5	C6	O61	307.9	300.0
H5	C5	C7	H7	66.7	60.0
H5	C5	C7	H7A	186.7	180.0
H5	C5	C7	H7B	306.7	300.0
O62	C6	C5	H5	126.8	120.0
O62	C6	O61	HO61	360.0	360.0
O61	C6	C5	C7	60.3	60.0
O61	C6	C5	H5	307.9	300.0
H7	C7	C5	H5	66.7	60.0
C5	C7	H7	H7A	120.0	120.0
C5	C7	H7	H7B	240.0	240.0
H7A	C7	H7	H7B	120.0	120.0
H7A	C7	C5	H5	186.7	180.0
C5	C7	H7A	H7	240.0	240.0
C5	C7	H7A	H7B	120.0	120.0
H7	C7	H7A	H7B	240.0	240.0
H7B	C7	C5	H5	306.7	300.0
C5	C7	H7B	H7	120.0	120.0
C5	C7	H7B	H7A	240.0	240.0
H7	C7	H7B	H7A	120.0	120.0