PDB Chemical Component LXC
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for LXC
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C5 |
O5 |
1.450 |
1.425 |
C5 |
C4 |
1.451 |
1.530 |
C5 |
H51 |
1.114 |
1.090 |
C5 |
H52 |
1.115 |
1.091 |
O5 |
C1 |
1.527 |
1.426 |
C1 |
O1 |
1.441 |
1.428 |
C1 |
C2 |
1.548 |
1.530 |
C1 |
H1 |
1.115 |
1.089 |
O1 |
HO1 |
0.950 |
0.966 |
C2 |
O2 |
1.463 |
1.428 |
C2 |
C3 |
1.533 |
1.532 |
C2 |
H2 |
1.115 |
1.090 |
O2 |
HO2 |
0.950 |
0.968 |
C3 |
O3 |
1.470 |
1.428 |
C3 |
C4 |
1.561 |
1.533 |
C3 |
H3 |
1.115 |
1.091 |
O3 |
HO3 |
0.950 |
0.967 |
C4 |
O4 |
1.436 |
1.429 |
C4 |
H4 |
1.115 |
1.090 |
O4 |
HO4 |
0.950 |
0.966 |
Bond Angles for LXC
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O5 |
C5 |
C4 |
110.6 |
109.8 |
O5 |
C5 |
H51 |
111.8 |
109.5 |
O5 |
C5 |
H52 |
111.8 |
109.4 |
C5 |
O5 |
C1 |
110.7 |
107.7 |
C4 |
C5 |
H51 |
111.8 |
109.4 |
C4 |
C5 |
H52 |
111.8 |
109.3 |
C5 |
C4 |
C3 |
110.1 |
109.1 |
C5 |
C4 |
O4 |
111.1 |
109.6 |
C5 |
C4 |
H4 |
108.8 |
109.5 |
H51 |
C5 |
H52 |
98.6 |
109.3 |
O5 |
C1 |
O1 |
109.9 |
109.4 |
O5 |
C1 |
C2 |
107.7 |
109.8 |
O5 |
C1 |
H1 |
110.0 |
109.4 |
O1 |
C1 |
C2 |
109.4 |
109.4 |
O1 |
C1 |
H1 |
109.9 |
109.4 |
C1 |
O1 |
HO1 |
109.8 |
106.9 |
C2 |
C1 |
H1 |
109.9 |
109.4 |
C1 |
C2 |
O2 |
112.3 |
109.6 |
C1 |
C2 |
C3 |
109.4 |
109.1 |
C1 |
C2 |
H2 |
108.6 |
109.5 |
O2 |
C2 |
C3 |
109.4 |
109.7 |
O2 |
C2 |
H2 |
108.6 |
109.5 |
C2 |
O2 |
HO2 |
112.2 |
106.8 |
C3 |
C2 |
H2 |
108.6 |
109.4 |
C2 |
C3 |
O3 |
110.6 |
109.7 |
C2 |
C3 |
C4 |
109.6 |
108.7 |
C2 |
C3 |
H3 |
108.4 |
109.5 |
O3 |
C3 |
C4 |
111.4 |
109.9 |
O3 |
C3 |
H3 |
108.4 |
109.6 |
C3 |
O3 |
HO3 |
111.4 |
106.9 |
C4 |
C3 |
H3 |
108.4 |
109.4 |
C3 |
C4 |
O4 |
109.4 |
109.6 |
C3 |
C4 |
H4 |
108.7 |
109.5 |
O4 |
C4 |
H4 |
108.7 |
109.5 |
C4 |
O4 |
HO4 |
111.1 |
106.8 |
Torsion Angles for LXC
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C4 |
C5 |
O5 |
H51 |
125.3 |
120.2 |
C4 |
C5 |
O5 |
H52 |
234.7 |
240.0 |
O5 |
C5 |
C4 |
C3 |
60.9 |
61.1 |
O5 |
C5 |
C4 |
O4 |
182.2 |
181.1 |
O5 |
C5 |
C4 |
H4 |
301.9 |
301.3 |
H51 |
C5 |
O5 |
H52 |
109.5 |
119.8 |
C5 |
O5 |
C1 |
O1 |
180.6 |
187.7 |
C5 |
O5 |
C1 |
C2 |
61.6 |
67.6 |
C5 |
O5 |
C1 |
H1 |
301.8 |
307.5 |
O5 |
C5 |
C4 |
H51 |
234.7 |
239.8 |
O5 |
C5 |
C4 |
H52 |
125.3 |
120.1 |
C4 |
C5 |
O5 |
C1 |
295.5 |
292.4 |
H51 |
C5 |
C4 |
H52 |
250.5 |
240.3 |
C2 |
C3 |
C4 |
C5 |
303.3 |
306.5 |
O3 |
C3 |
C4 |
C5 |
180.5 |
186.5 |
C5 |
C4 |
C3 |
H3 |
61.3 |
66.1 |
C3 |
C4 |
C5 |
O4 |
238.7 |
240.0 |
C3 |
C4 |
C5 |
H4 |
119.0 |
119.8 |
O4 |
C4 |
C5 |
H4 |
240.4 |
239.8 |
C5 |
C4 |
O4 |
HO4 |
180.0 |
60.1 |
O5 |
C5 |
H51 |
C4 |
124.6 |
120.4 |
O5 |
C5 |
H51 |
H52 |
242.3 |
240.1 |
H51 |
C5 |
O5 |
C1 |
170.2 |
172.3 |
C4 |
C5 |
H51 |
H52 |
117.7 |
119.7 |
H51 |
C5 |
C4 |
C3 |
186.2 |
181.3 |
H51 |
C5 |
C4 |
O4 |
307.5 |
301.3 |
H51 |
C5 |
C4 |
H4 |
67.1 |
61.5 |
O5 |
C5 |
H52 |
C4 |
235.4 |
239.7 |
O5 |
C5 |
H52 |
H51 |
117.7 |
119.9 |
H52 |
C5 |
O5 |
C1 |
60.7 |
52.5 |
C4 |
C5 |
H52 |
H51 |
242.3 |
240.2 |
H52 |
C5 |
C4 |
C3 |
295.6 |
301.0 |
H52 |
C5 |
C4 |
O4 |
57.0 |
61.0 |
H52 |
C5 |
C4 |
H4 |
176.6 |
181.2 |
C1 |
O5 |
C5 |
C4 |
295.5 |
292.4 |
C1 |
O5 |
C5 |
H51 |
170.2 |
172.3 |
C1 |
O5 |
C5 |
H52 |
60.7 |
52.5 |
O1 |
C1 |
O5 |
C2 |
119.0 |
120.1 |
O1 |
C1 |
O5 |
H1 |
238.8 |
240.2 |
O5 |
C1 |
O1 |
HO1 |
180.0 |
59.9 |
C2 |
C1 |
O5 |
H1 |
119.8 |
120.0 |
O5 |
C1 |
C2 |
O2 |
181.1 |
178.8 |
O5 |
C1 |
C2 |
C3 |
302.7 |
298.9 |
O5 |
C1 |
C2 |
H2 |
61.0 |
58.6 |
O5 |
C1 |
O1 |
C2 |
242.0 |
239.7 |
O5 |
C1 |
O1 |
H1 |
121.2 |
119.9 |
C2 |
C1 |
O1 |
H1 |
239.2 |
240.2 |
O1 |
C1 |
C2 |
O2 |
61.7 |
58.7 |
O1 |
C1 |
C2 |
C3 |
183.3 |
178.8 |
O1 |
C1 |
C2 |
H2 |
301.7 |
298.5 |
O5 |
C1 |
C2 |
O1 |
119.4 |
120.1 |
O5 |
C1 |
C2 |
H1 |
240.2 |
239.9 |
O1 |
C1 |
C2 |
H1 |
120.8 |
119.8 |
C2 |
C1 |
O1 |
HO1 |
298.0 |
180.3 |
O2 |
C2 |
C1 |
C3 |
238.4 |
239.9 |
O2 |
C2 |
C1 |
H2 |
120.0 |
120.2 |
C1 |
C2 |
O2 |
HO2 |
180.0 |
300.0 |
C3 |
C2 |
C1 |
H2 |
241.7 |
240.3 |
C1 |
C2 |
C3 |
O3 |
178.6 |
173.7 |
C1 |
C2 |
C3 |
C4 |
55.4 |
53.5 |
C1 |
C2 |
C3 |
H3 |
297.3 |
294.0 |
O5 |
C1 |
H1 |
O1 |
238.9 |
240.1 |
O5 |
C1 |
H1 |
C2 |
118.4 |
120.3 |
O1 |
C1 |
H1 |
C2 |
239.6 |
240.2 |
H1 |
C1 |
O1 |
HO1 |
58.8 |
300.1 |
H1 |
C1 |
C2 |
O2 |
300.9 |
298.8 |
H1 |
C1 |
C2 |
C3 |
62.5 |
58.9 |
H1 |
C1 |
C2 |
H2 |
180.9 |
178.7 |
HO1 |
O1 |
C1 |
C2 |
298.0 |
180.3 |
HO1 |
O1 |
C1 |
H1 |
58.8 |
300.1 |
O2 |
C2 |
C1 |
H1 |
300.9 |
298.8 |
C1 |
C2 |
O2 |
C3 |
121.7 |
119.8 |
C1 |
C2 |
O2 |
H2 |
240.0 |
239.8 |
C3 |
C2 |
O2 |
H2 |
118.3 |
120.1 |
O2 |
C2 |
C3 |
O3 |
302.0 |
293.7 |
O2 |
C2 |
C3 |
C4 |
178.7 |
173.5 |
O2 |
C2 |
C3 |
H3 |
60.6 |
54.0 |
C5 |
C4 |
C3 |
C2 |
303.3 |
306.5 |
C3 |
C2 |
C1 |
H1 |
62.5 |
58.9 |
C1 |
C2 |
C3 |
O2 |
236.6 |
240.0 |
C1 |
C2 |
C3 |
H2 |
118.3 |
119.8 |
O2 |
C2 |
C3 |
H2 |
241.7 |
239.8 |
C3 |
C2 |
O2 |
HO2 |
58.3 |
180.3 |
O3 |
C3 |
C2 |
C4 |
123.3 |
120.2 |
O3 |
C3 |
C2 |
H3 |
241.3 |
239.7 |
C2 |
C3 |
O3 |
HO3 |
57.8 |
180.0 |
C4 |
C3 |
C2 |
H3 |
118.1 |
119.5 |
C2 |
C3 |
C4 |
O4 |
180.9 |
186.5 |
C2 |
C3 |
C4 |
H4 |
62.3 |
66.4 |
H2 |
C2 |
C1 |
H1 |
180.9 |
178.7 |
C1 |
C2 |
H2 |
O2 |
122.3 |
120.2 |
C1 |
C2 |
H2 |
C3 |
241.1 |
240.4 |
O2 |
C2 |
H2 |
C3 |
118.8 |
120.2 |
H2 |
C2 |
O2 |
HO2 |
300.0 |
60.2 |
H2 |
C2 |
C3 |
O3 |
60.3 |
53.8 |
H2 |
C2 |
C3 |
C4 |
297.0 |
293.7 |
H2 |
C2 |
C3 |
H3 |
179.0 |
174.1 |
HO2 |
O2 |
C2 |
C3 |
58.3 |
180.3 |
HO2 |
O2 |
C2 |
H2 |
300.0 |
60.2 |
C5 |
C4 |
C3 |
O3 |
180.5 |
186.5 |
O3 |
C3 |
C2 |
H2 |
60.3 |
53.8 |
C2 |
C3 |
O3 |
C4 |
237.8 |
240.6 |
C2 |
C3 |
O3 |
H3 |
118.7 |
120.3 |
C4 |
C3 |
O3 |
H3 |
240.9 |
239.7 |
O3 |
C3 |
C4 |
O4 |
58.1 |
66.5 |
O3 |
C3 |
C4 |
H4 |
299.5 |
306.4 |
C3 |
C4 |
C5 |
H51 |
186.2 |
181.3 |
C3 |
C4 |
C5 |
H52 |
295.6 |
301.0 |
C5 |
C4 |
C3 |
O4 |
122.3 |
120.0 |
C5 |
C4 |
C3 |
H4 |
241.0 |
240.1 |
C4 |
C3 |
C2 |
H2 |
297.0 |
293.7 |
C2 |
C3 |
C4 |
O3 |
122.8 |
120.0 |
C2 |
C3 |
C4 |
H3 |
241.9 |
240.4 |
O3 |
C3 |
C4 |
H3 |
119.1 |
120.4 |
C4 |
C3 |
O3 |
HO3 |
180.0 |
299.4 |
O4 |
C4 |
C3 |
H4 |
118.6 |
120.1 |
C3 |
C4 |
O4 |
HO4 |
301.7 |
179.8 |
H3 |
C3 |
C2 |
H2 |
179.0 |
174.1 |
C2 |
C3 |
H3 |
O3 |
239.9 |
239.7 |
C2 |
C3 |
H3 |
C4 |
118.9 |
119.1 |
O3 |
C3 |
H3 |
C4 |
238.9 |
239.4 |
H3 |
C3 |
O3 |
HO3 |
299.1 |
59.7 |
H3 |
C3 |
C4 |
O4 |
299.0 |
306.1 |
H3 |
C3 |
C4 |
H4 |
180.4 |
186.0 |
HO3 |
O3 |
C3 |
C4 |
180.0 |
299.4 |
HO3 |
O3 |
C3 |
H3 |
299.1 |
59.7 |
O4 |
C4 |
C5 |
H51 |
307.5 |
301.3 |
O4 |
C4 |
C5 |
H52 |
57.0 |
61.0 |
C5 |
C4 |
O4 |
C3 |
238.3 |
240.3 |
C5 |
C4 |
O4 |
H4 |
119.7 |
120.2 |
O4 |
C4 |
C3 |
H3 |
299.0 |
306.1 |
C3 |
C4 |
O4 |
H4 |
241.4 |
239.9 |
H4 |
C4 |
C5 |
H51 |
67.1 |
61.5 |
H4 |
C4 |
C5 |
H52 |
176.6 |
181.2 |
C5 |
C4 |
H4 |
C3 |
119.9 |
119.6 |
C5 |
C4 |
H4 |
O4 |
238.9 |
239.8 |
H4 |
C4 |
C3 |
H3 |
180.4 |
186.0 |
C3 |
C4 |
H4 |
O4 |
119.0 |
120.2 |
H4 |
C4 |
O4 |
HO4 |
60.4 |
299.9 |
HO4 |
O4 |
C4 |
H4 |
60.4 |
299.9 |