Atom Nomenclature for LWH

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for LWH

Atom Name (V3) Atom Name (V2)
C01 C01
C02 C02
C03 C03
C04 C04
C05 C05
C06 C06
C07 C07
C08 C08
N09 N09
N10 N10
C11 C11
C12 C12
C13 C13
C14 C14
N15 N15
N16 N16
C17 C17
C18 C18
C19 C19
C20 C20
C21 C21
C22 C22
C23 C23
C24 C24
C25 C25
N26 N26
N27 N27
O28 O28
H01 H01
H02 H02
H03 H03
H04 H04
H15 H15
H11 H11
H121 H121
H122 H122
H141 H141
H142 H142
H16 H16
H131 H131
H132 H132
H22 H22
H19 H19
H28 H28
H20 H20
H24 H24
H26 H26
H25 H25