PDB Chemical Component LVO

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for LVO

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C2 C3 1.483 1.324
C2 O6 1.342 1.355
C3 C4 1.550 1.505
C3 H3 1.080 1.081
C4 N4 1.448 1.465
C4 C5 1.541 1.533
C4 H4 1.100 1.090
C5 N5 1.412 1.465
C5 H5 1.100 1.090
C6 C5 1.548 1.534
C6 C7 1.495 1.529
C6 H6 1.100 1.091
O6 C6 1.383 1.431
C1 C2 1.492 1.473
O1B C1 1.340 1.347
O1A C1 1.150 1.215
C7 O7 1.373 1.430
C7 H7 1.100 1.090
C8 C7 1.489 1.531
C8 C9 1.516 1.530
C8 H8 1.100 1.090
C9 H91 1.100 1.090
C9 H92 1.100 1.090
O9 C9 1.391 1.452
CAN O9 1.282 1.343
CAN OAV 1.225 1.208
CAN C15 1.540 1.507
O7 C13 1.350 1.429
C13 H131 1.100 1.090
C13 H132 1.100 1.090
C13 H133 1.100 1.090
O8 C8 1.346 1.429
O8 HO8 0.949 0.967
N4 C12 1.410 1.375
N4 HN41 1.000 0.970
C12 N13 1.296 1.375
N13 HN13 1.000 0.970
N13 HN14 1.000 0.971
N12 C12 1.276 1.303
N12 HN12 1.000 0.970
C10 O10 1.133 1.213
C10 C11 1.484 1.508
C11 H111 1.100 1.090
C11 H112 1.100 1.090
C11 H113 1.100 1.090
N5 C10 1.404 1.347
N5 HN5 1.000 0.970
C15 C16 1.540 1.530
C16 C17 1.540 1.531
C17 C18 1.540 1.530
C18 C19 1.540 1.529
C19 C20 1.540 1.531
C20 C21 1.539 1.529
O1B HOB1 0.950 0.967
C15 H23 1.100 1.090
C15 H24 1.100 1.090
C16 H25 1.100 1.090
C16 H26 1.100 1.090
C17 H27 1.100 1.090
C17 H28 1.100 1.090
C18 H29 1.100 1.090
C18 H30 1.100 1.090
C19 H31 1.100 1.091
C19 H32 1.100 1.090
C20 H33 1.100 1.090
C20 H34 1.100 1.089
C21 H35 1.100 1.089
C21 H36 1.100 1.090
C21 H37 1.100 1.090

Bond Angles for LVO

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C3 C2 O6 122.2 123.0
C2 C3 C4 116.0 122.3
C2 C3 H3 122.0 118.9
C2 O6 C6 119.6 117.6
C4 C3 H3 122.0 118.8
C3 C4 N4 116.1 109.5
C3 C4 C5 113.5 109.4
C3 C4 H4 103.5 109.5
C5 C4 N4 115.1 109.5
N4 C4 H4 101.3 109.5
C4 N4 C12 125.5 120.0
C4 N4 HN41 117.2 120.0
C5 C4 H4 104.9 109.5
C4 C5 N5 114.1 109.7
C4 C5 H5 104.0 109.7
N5 C5 H5 105.3 109.7
C6 C5 N5 112.9 109.7
C5 N5 C10 121.3 120.0
C5 N5 HN5 119.3 120.0
C6 C5 H5 105.4 109.8
C7 C6 H6 109.0 109.7
O6 C6 C7 109.8 109.7
C6 C7 O7 109.1 109.5
C6 C7 H7 111.5 109.5
O6 C6 H6 107.9 109.7
O7 C7 H7 108.5 109.5
C8 C7 O7 110.2 109.5
C7 O7 C13 112.1 114.0
C8 C7 H7 110.5 109.4
C9 C8 H8 109.1 109.5
C8 C9 H91 107.5 109.4
C8 C9 H92 107.5 109.4
O8 C8 H8 104.4 109.5
H91 C9 H92 111.3 109.5
O9 C9 H91 107.6 109.5
O9 C9 H92 107.5 109.5
OAV CAN C15 118.1 120.0
CAN C15 C16 120.0 109.4
CAN C15 H23 106.1 109.5
CAN C15 H24 106.1 109.5
O7 C13 H131 109.5 109.5
O7 C13 H132 109.4 109.4
O7 C13 H133 109.5 109.5
H131 C13 H132 109.5 109.5
H131 C13 H133 109.4 109.5
H132 C13 H133 109.5 109.5
C12 N4 HN41 117.3 120.0
N4 C12 N13 116.7 120.0
C12 N13 HN13 120.0 120.0
C12 N13 HN14 120.0 120.0
HN13 N13 HN14 120.0 120.0
C11 C10 O10 122.5 120.0
C10 C11 H111 109.5 109.5
C10 C11 H112 109.5 109.4
C10 C11 H113 109.4 109.4
H111 C11 H112 109.4 109.5
H111 C11 H113 109.5 109.5
H112 C11 H113 109.5 109.5
C15 C16 C17 120.0 109.4
C16 C15 H23 106.1 109.5
C16 C15 H24 106.1 109.5
C15 C16 H25 106.1 109.5
C15 C16 H26 106.1 109.5
C16 C17 C18 120.0 109.4
C17 C16 H25 106.1 109.5
C17 C16 H26 106.1 109.4
C16 C17 H27 106.1 109.5
C16 C17 H28 106.1 109.4
C17 C18 C19 120.0 109.4
C18 C17 H27 106.1 109.5
C18 C17 H28 106.1 109.5
C17 C18 H29 106.1 109.5
C17 C18 H30 106.1 109.5
C18 C19 C20 120.0 109.5
C19 C18 H29 106.1 109.5
C19 C18 H30 106.1 109.5
C18 C19 H31 106.1 109.4
C18 C19 H32 106.1 109.5
C19 C20 C21 120.0 109.5
C20 C19 H31 106.1 109.4
C20 C19 H32 106.1 109.5
C19 C20 H33 106.1 109.4
C19 C20 H34 106.1 109.4
C21 C20 H33 106.1 109.5
C21 C20 H34 106.1 109.5
C20 C21 H35 109.5 109.5
C20 C21 H36 109.4 109.5
C20 C21 H37 109.5 109.5
H23 C15 H24 112.6 109.4
H25 C16 H26 112.6 109.5
H27 C17 H28 112.6 109.5
H29 C18 H30 112.6 109.5
H31 C19 H32 112.6 109.5
H33 C20 H34 112.6 109.5
H35 C21 H36 109.5 109.4
H35 C21 H37 109.4 109.5
H36 C21 H37 109.5 109.4

Torsion Angles for LVO

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C3 C2 O6 C6 35.0 16.6
C4 C3 C2 H3 180.0 180.0
C2 C3 C4 N4 156.4 137.5
C2 C3 C4 C5 19.6 17.5
C2 C3 C4 H4 266.5 257.6
O6 C2 C3 C4 341.2 359.6
O6 C2 C3 H3 161.2 179.7
C2 O6 C6 C7 186.8 192.4
C2 O6 C6 H6 68.1 71.9
C4 C3 C2 O6 341.2 359.6
C2 C3 C4 H3 180.0 180.0
C5 C4 C3 N4 223.2 240.0
N4 C4 C3 H4 249.9 240.0
C3 C4 N4 C12 143.2 85.0
C3 C4 N4 HN41 323.2 265.1
C5 C4 C3 H4 113.2 120.0
C3 C4 C5 N5 193.8 193.1
C3 C4 C5 H5 79.7 72.6
H3 C3 C2 O6 161.2 179.7
C2 C3 H3 C4 180.0 180.0
H3 C3 C4 N4 336.4 317.5
H3 C3 C4 C5 199.6 197.5
H3 C3 C4 H4 86.4 77.5
N4 C4 C3 H3 336.4 317.5
C3 C4 N4 C5 223.9 240.1
C3 C4 N4 H4 111.3 120.0
C5 C4 N4 H4 247.4 240.0
N4 C4 C5 N5 56.6 73.1
N4 C4 C5 H5 302.5 312.6
C12 N4 C4 HN41 180.0 179.9
C4 N4 C12 N13 170.7 180.0
C5 C4 C3 H3 199.6 197.5
C3 C4 C5 N4 137.2 120.0
C3 C4 C5 H4 247.7 240.0
N4 C4 C5 H4 110.5 120.0
C5 C4 N4 C12 279.2 204.9
C5 C4 N4 HN41 99.3 25.0
N5 C5 C4 H5 114.1 120.5
C6 C5 C4 N5 131.7 119.7
C4 C5 N5 C10 268.3 275.0
C4 C5 N5 HN5 88.4 95.0
C6 C5 C4 H5 245.8 240.2
H4 C4 C3 H3 86.4 77.5
C3 C4 H4 N4 239.3 240.0
C3 C4 H4 C5 119.2 119.9
C5 C4 H4 N4 120.1 120.0
H4 C4 N4 C12 31.8 325.0
H4 C4 N4 HN41 211.8 145.0
H4 C4 C5 N5 306.2 313.1
H4 C4 C5 H5 192.0 192.6
N5 C5 C4 N4 56.6 73.1
N5 C5 C4 H4 306.2 313.1
C4 C5 N5 H5 246.7 239.5
C6 C5 N5 H5 114.5 120.6
H5 C5 C4 N4 302.5 312.6
H5 C5 C4 H4 192.0 192.6
C4 C5 H5 N5 120.2 120.5
C6 C5 H5 N5 240.4 239.4
H5 C5 N5 C10 21.7 35.6
H5 C5 N5 HN5 201.7 215.6
C2 O6 C6 C5 311.2 312.2
C6 C5 C4 N4 188.3 192.8
C6 C5 C4 H4 77.8 72.8
C4 C5 C6 N5 227.8 240.3
C4 C5 C6 H5 113.3 119.7
N5 C5 C6 H5 245.6 239.4
C6 C5 N5 C10 136.2 156.2
C6 C5 N5 HN5 316.2 336.2
C7 C6 C5 N5 304.4 302.4
C7 C6 C5 H5 58.8 63.0
O6 C6 C7 H6 241.9 239.4
O7 C7 C6 H7 240.2 240.0
C8 C7 C6 O7 240.8 240.0
C6 C7 O7 C13 143.1 134.1
C8 C7 C6 H7 121.0 120.0
H6 C6 C5 N5 63.0 63.0
H6 C6 C5 H5 177.4 183.5
O6 C6 H6 C7 119.2 120.6
H6 C6 C7 O7 184.8 184.4
H6 C6 C7 H7 304.7 304.4
O6 C6 C5 N5 180.8 182.7
O6 C6 C5 H5 295.2 303.2
C7 C6 O6 H6 118.7 120.6
O6 C6 C7 O7 66.8 63.9
O6 C6 C7 H7 186.6 183.9
C1 C2 C3 H3 2.4 359.4
O7 C7 C6 H6 184.8 184.4
C6 C7 O7 H7 121.7 120.0
C8 C7 O7 H7 238.9 240.0
C7 O7 C13 H131 180.0 299.3
C7 O7 C13 H132 300.0 59.3
C7 O7 C13 H133 60.0 179.3
H7 C7 C6 H6 304.7 304.4
C6 C7 H7 O7 239.8 240.0
C8 C7 H7 O7 120.9 120.0
H7 C7 O7 C13 21.5 14.1
C8 C7 C6 H6 65.6 64.4
C6 C7 C8 O7 118.5 120.0
C6 C7 C8 H7 238.4 240.0
O7 C7 C8 H7 119.9 120.0
C8 C7 O7 C13 260.4 254.2
C9 C8 C7 O7 49.2 65.2
C9 C8 C7 H7 289.3 305.2
O8 C8 C9 H8 115.7 120.1
H91 C9 C8 H92 240.0 240.0
O9 C9 C8 H91 240.0 240.0
O9 C9 C8 H92 120.0 120.0
H8 C8 C7 O7 290.4 305.2
H8 C8 C7 H7 170.5 185.2
H8 C8 C9 H91 99.3 66.0
H8 C8 C9 H92 219.3 186.0
H91 C9 C8 H8 99.3 66.0
C8 C9 H91 H92 117.5 120.0
O9 C9 H91 H92 242.4 239.9
H92 C9 C8 H8 219.3 186.0
C8 C9 H92 H91 242.5 240.1
O9 C9 H92 H91 117.6 120.1
O9 C9 C8 H8 339.3 306.0
C8 C9 O9 H91 120.0 120.0
C8 C9 O9 H92 240.0 240.0
H91 C9 O9 H92 120.0 120.1
CAN O9 C9 H91 323.5 60.0
CAN O9 C9 H92 203.5 300.0
OAV CAN C15 C16 360.0 359.9
OAV CAN C15 H23 120.0 120.0
OAV CAN C15 H24 240.0 240.0
CAN C15 C16 C17 180.0 180.0
C16 C15 CAN H23 240.0 240.0
C16 C15 CAN H24 120.0 120.0
CAN C15 C16 H25 300.0 300.0
CAN C15 C16 H26 60.0 60.1
H23 C15 CAN H24 240.0 240.0
C13 O7 C7 H7 21.5 14.1
H131 C13 O7 H132 240.0 240.0
H131 C13 O7 H133 120.0 120.0
H132 C13 O7 H133 240.0 240.0
O7 C13 H131 H132 120.0 120.0
O7 C13 H131 H133 240.0 240.0
H132 C13 H131 H133 120.0 120.0
O7 C13 H132 H131 240.0 240.0
O7 C13 H132 H133 120.0 120.0
H131 C13 H132 H133 240.0 240.0
O7 C13 H133 H131 120.0 120.0
O7 C13 H133 H132 240.0 240.0
H131 C13 H133 H132 120.0 120.0
O8 C8 C7 H7 54.7 65.2
C9 C8 O8 H8 241.5 240.0
O8 C8 C9 H91 215.0 186.1
O8 C8 C9 H92 335.0 306.1
HO8 O8 C8 H8 61.1 180.0
C12 N4 C4 H4 31.8 325.0
C4 N4 C12 HN41 180.0 180.1
N4 C12 N13 HN13 170.9 360.0
N4 C12 N13 HN14 350.9 180.1
HN41 N4 C4 H4 211.8 145.0
C4 N4 HN41 C12 180.0 179.9
HN41 N4 C12 N13 350.7 359.9
N13 C12 N4 HN41 350.7 359.9
HN13 N13 C12 HN14 180.0 179.9
C12 N13 HN13 HN14 180.0 180.1
C12 N13 HN14 HN13 180.0 179.9
N12 C12 N4 HN41 161.8 180.0
N12 C12 N13 HN13 360.0 179.9
N12 C12 N13 HN14 180.0 360.0
C5 N5 C10 O10 345.7 359.9
O10 C10 C11 H111 0.0 0.0
O10 C10 C11 H112 120.0 120.1
O10 C10 C11 H113 240.0 240.0
C5 N5 C10 C11 169.8 180.0
H111 C11 C10 H112 240.0 240.0
H111 C11 C10 H113 120.0 120.0
H112 C11 C10 H113 240.0 240.0
H111 C11 C10 O10 0.0 0.0
C10 C11 H111 H112 120.0 120.0
C10 C11 H111 H113 240.0 240.0
H112 C11 H111 H113 120.0 120.0
H112 C11 C10 O10 120.0 120.1
C10 C11 H112 H111 240.0 240.0
C10 C11 H112 H113 120.0 119.9
H111 C11 H112 H113 240.0 240.0
H113 C11 C10 O10 240.0 240.0
C10 C11 H113 H111 120.0 120.0
C10 C11 H113 H112 240.0 240.0
H111 C11 H113 H112 120.0 120.0
C10 N5 C5 H5 21.7 35.6
C5 N5 C10 HN5 180.0 180.0
N5 C10 C11 H111 176.1 179.9
N5 C10 C11 H112 296.1 300.0
N5 C10 C11 H113 56.1 60.0
HN5 N5 C5 H5 201.7 215.6
C5 N5 HN5 C10 180.0 180.0
CAN C15 C16 H23 120.0 120.0
CAN C15 C16 H24 240.0 240.0
C15 C16 C17 C18 180.0 180.0
C17 C16 C15 H25 240.0 240.0
C17 C16 C15 H26 120.0 119.9
C15 C16 C17 H27 300.0 300.0
C15 C16 C17 H28 60.0 60.1
H23 C15 C16 H24 120.0 120.0
H25 C16 C15 H26 240.0 239.9
C17 C16 C15 H23 60.0 60.0
C17 C16 C15 H24 300.0 300.0
C15 C16 C17 H25 120.0 120.0
C15 C16 C17 H26 240.0 240.1
C16 C17 C18 C19 180.0 180.0
C18 C17 C16 H27 240.0 240.0
C18 C17 C16 H28 120.0 119.9
C16 C17 C18 H29 300.0 300.0
C16 C17 C18 H30 60.0 60.0
H25 C16 C17 H26 120.0 120.1
H27 C17 C16 H28 240.0 239.9
C18 C17 C16 H25 60.0 60.0
C18 C17 C16 H26 300.0 299.9
C16 C17 C18 H27 120.0 120.0
C16 C17 C18 H28 240.0 240.1
C17 C18 C19 C20 180.0 180.0
C19 C18 C17 H29 240.0 240.0
C19 C18 C17 H30 120.0 120.0
C17 C18 C19 H31 300.0 300.0
C17 C18 C19 H32 60.0 60.0
H27 C17 C18 H28 120.0 120.1
H29 C18 C17 H30 240.0 240.0
C19 C18 C17 H27 60.1 60.0
C19 C18 C17 H28 300.0 300.0
C17 C18 C19 H29 120.0 120.0
C17 C18 C19 H30 240.0 240.0
C18 C19 C20 C21 180.0 180.0
C20 C19 C18 H31 240.0 240.1
C20 C19 C18 H32 120.0 120.0
C18 C19 C20 H33 299.9 300.0
C18 C19 C20 H34 60.0 60.0
H29 C18 C19 H30 120.0 120.0
H31 C19 C18 H32 240.0 240.0
C20 C19 C18 H29 60.0 60.0
C20 C19 C18 H30 300.0 300.0
C18 C19 C20 H31 120.0 119.9
C18 C19 C20 H32 240.0 239.9
C21 C20 C19 H33 240.0 240.0
C21 C20 C19 H34 120.0 120.0
C19 C20 C21 H35 180.0 180.0
C19 C20 C21 H36 300.0 300.0
C19 C20 C21 H37 60.0 60.0
H31 C19 C20 H32 120.0 120.0
H33 C20 C19 H34 240.0 240.0
C21 C20 C19 H31 60.0 60.1
C21 C20 C19 H32 300.0 300.1
C19 C20 C21 H33 120.0 119.9
C19 C20 C21 H34 240.0 240.0
H33 C20 C21 H34 120.0 120.1
H35 C21 C20 H36 240.0 240.0
H35 C21 C20 H37 120.0 120.0
H36 C21 C20 H37 240.0 240.0
CAN C15 H23 C16 231.3 240.0
CAN C15 H23 H24 115.7 120.0
H23 C15 C16 C17 60.0 60.0
C16 C15 H23 H24 244.3 240.0
H23 C15 C16 H25 180.0 180.0
H23 C15 C16 H26 300.0 300.0
CAN C15 H24 C16 128.7 119.9
CAN C15 H24 H23 244.3 240.0
H24 C15 C16 C17 300.0 300.0
C16 C15 H24 H23 115.7 120.0
H24 C15 C16 H25 60.0 60.0
H24 C15 C16 H26 180.0 180.0
C15 C16 H25 C17 231.3 240.0
H25 C16 C15 H23 180.0 180.0
H25 C16 C15 H24 60.0 60.0
C15 C16 H25 H26 115.7 120.0
H25 C16 C17 C18 60.0 60.0
C17 C16 H25 H26 244.3 240.0
H25 C16 C17 H27 180.0 180.0
H25 C16 C17 H28 300.0 300.1
C15 C16 H26 C17 128.7 119.9
H26 C16 C15 H23 300.0 300.0
H26 C16 C15 H24 180.0 180.0
C15 C16 H26 H25 244.3 240.0
H26 C16 C17 C18 300.0 299.9
C17 C16 H26 H25 115.7 120.0
H26 C16 C17 H27 60.0 59.9
H26 C16 C17 H28 180.0 180.0
C16 C17 H27 C18 231.3 240.0
H27 C17 C16 H25 180.0 180.0
H27 C17 C16 H26 60.0 59.9
C16 C17 H27 H28 115.7 120.0
H27 C17 C18 C19 60.1 60.0
C18 C17 H27 H28 244.3 240.0
H27 C17 C18 H29 180.0 180.0
H27 C17 C18 H30 300.1 300.0
C16 C17 H28 C18 128.7 119.9
H28 C17 C16 H25 300.0 300.1
H28 C17 C16 H26 180.0 180.0
C16 C17 H28 H27 244.3 240.0
H28 C17 C18 C19 300.0 300.0
C18 C17 H28 H27 115.6 120.0
H28 C17 C18 H29 60.0 59.9
H28 C17 C18 H30 180.0 180.0
C17 C18 H29 C19 231.3 240.0
H29 C18 C17 H27 180.0 180.0
H29 C18 C17 H28 60.0 59.9
C17 C18 H29 H30 115.7 120.0
H29 C18 C19 C20 60.0 60.0
C19 C18 H29 H30 244.3 240.0
H29 C18 C19 H31 180.0 180.0
H29 C18 C19 H32 300.0 300.0
C17 C18 H30 C19 128.7 120.0
H30 C18 C17 H27 300.1 300.0
H30 C18 C17 H28 180.0 180.0
C17 C18 H30 H29 244.4 240.0
H30 C18 C19 C20 300.0 300.0
C19 C18 H30 H29 115.7 120.0
H30 C18 C19 H31 60.0 60.0
H30 C18 C19 H32 180.0 180.0
C18 C19 H31 C20 231.3 240.0
H31 C19 C18 H29 180.0 180.0
H31 C19 C18 H30 60.0 60.0
C18 C19 H31 H32 115.7 120.1
H31 C19 C20 C21 60.0 60.1
C20 C19 H31 H32 244.3 240.0
H31 C19 C20 H33 180.0 180.0
H31 C19 C20 H34 300.0 300.0
C18 C19 H32 C20 128.7 120.1
H32 C19 C18 H29 300.0 300.0
H32 C19 C18 H30 180.0 180.0
C18 C19 H32 H31 244.3 240.0
H32 C19 C20 C21 300.0 300.1
C20 C19 H32 H31 115.6 120.0
H32 C19 C20 H33 59.9 60.1
H32 C19 C20 H34 180.0 180.1
C19 C20 H33 C21 231.3 240.0
H33 C20 C19 H31 180.0 180.0
H33 C20 C19 H32 59.9 60.1
C19 C20 H33 H34 115.7 119.9
C21 C20 H33 H34 244.3 239.9
H33 C20 C21 H35 60.0 60.1
H33 C20 C21 H36 180.0 180.1
H33 C20 C21 H37 300.0 300.0
C19 C20 H34 C21 128.7 120.0
H34 C20 C19 H31 300.0 300.0
H34 C20 C19 H32 180.0 180.1
C19 C20 H34 H33 244.4 240.1
C21 C20 H34 H33 115.7 120.1
H34 C20 C21 H35 300.0 300.0
H34 C20 C21 H36 60.0 60.0
H34 C20 C21 H37 180.0 179.9
H35 C21 C20 H33 60.0 60.1
H35 C21 C20 H34 300.0 300.0
C20 C21 H35 H36 120.0 120.0
C20 C21 H35 H37 240.0 240.0
H36 C21 H35 H37 120.0 119.9
H36 C21 C20 H33 180.0 180.1
H36 C21 C20 H34 60.0 60.0
C20 C21 H36 H35 240.0 240.0
C20 C21 H36 H37 120.0 120.0
H35 C21 H36 H37 240.0 240.0
H37 C21 C20 H33 300.0 300.0
H37 C21 C20 H34 180.0 179.9
C20 C21 H37 H35 120.0 120.1
C20 C21 H37 H36 240.0 240.0
H35 C21 H37 H36 120.0 120.0