PDB Chemical Component LVN

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for LVN

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C O 1.222 1.209
C CA 1.520 1.506
C OXT 1.543 1.342
N CA 1.461 1.469
CA CB 1.520 1.530
CB CG1 1.530 1.507
CB CG2 1.527 1.530
CG1 OG1 1.231 1.207
N H 1.000 1.009
N H2 1.000 1.008
CA HA 1.100 1.089
CB HB 1.100 1.090
CG1 HG11 1.080 1.080
CG2 HG21 1.100 1.090
CG2 HG22 1.100 1.090
CG2 HG23 1.100 1.090
OXT HXT 0.950 0.967

Bond Angles for LVN

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O C CA 123.5 120.0
O C OXT 127.9 119.9
CA C OXT 107.4 120.1
C CA N 105.4 109.5
C CA CB 110.7 109.5
C CA HA 111.5 109.5
C OXT HXT 109.5 117.1
N CA CB 109.9 109.4
CA N H 109.5 111.0
CA N H2 109.5 111.0
N CA HA 112.2 109.5
CA CB CG1 110.5 109.5
CA CB CG2 109.6 109.5
CB CA HA 107.1 109.5
CA CB HB 108.9 109.5
CG1 CB CG2 110.2 109.5
CB CG1 OG1 121.3 120.0
CG1 CB HB 108.3 109.4
CB CG1 HG11 119.3 120.0
CG2 CB HB 109.3 109.4
CB CG2 HG21 109.5 109.5
CB CG2 HG22 109.5 109.4
CB CG2 HG23 109.5 109.5
OG1 CG1 HG11 119.3 120.0
H N H2 109.5 111.0
HG21 CG2 HG22 109.5 109.5
HG21 CG2 HG23 109.5 109.5
HG22 CG2 HG23 109.5 109.5

Torsion Angles for LVN

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
CA C O OXT 165.3 180.3
O C CA N 304.2 340.0
O C CA CB 63.0 99.9
O C CA HA 182.2 220.0
O C OXT HXT 0.0 0.1
O C CA OXT 192.1 179.7
CA C OXT HXT 192.8 179.8
N CA C CB 241.2 240.0
C CA N H 180.0 296.0
C CA N H2 300.0 60.0
N CA C HA 122.0 120.0
C CA CB CG1 61.3 180.0
C CA CB CG2 182.9 300.0
CB CA C HA 240.8 240.0
C CA CB HB 302.4 60.0
O C OXT CA 167.2 180.3
OXT C CA N 112.1 160.3
OXT C CA CB 230.9 280.3
OXT C CA HA 350.1 40.3
N CA C OXT 112.1 160.3
C CA N CB 119.3 120.0
C CA N HA 238.4 240.0
N CA CB CG1 177.3 300.0
N CA CB CG2 298.9 60.0
CB CA N HA 119.1 120.0
N CA CB HB 58.4 180.0
H N CA H2 240.0 236.0
CB CA C OXT 230.9 280.3
C CA CB N 244.0 240.0
C CA CB HA 121.8 120.0
CB CA N H 60.7 176.0
CB CA N H2 180.7 300.0
N CA CB HA 237.8 240.0
CG1 CB CA CG2 238.4 240.0
CA CB CG1 OG1 45.2 240.0
CG1 CB CA HB 118.9 120.0
CA CB CG1 HG11 225.2 60.0
CG2 CB CA HB 240.5 240.0
CA CB CG2 HG21 180.0 180.0
CA CB CG2 HG22 300.0 300.0
CA CB CG2 HG23 60.0 60.0
CA CB CG1 CG2 121.3 120.1
CG1 CB CA HA 299.5 60.0
CA CB CG1 HB 240.8 240.0
CG2 CB CG1 HB 119.4 120.0
CG1 CB CG2 HG21 301.9 300.0
CG1 CB CG2 HG22 61.9 60.0
CG1 CB CG2 HG23 181.9 180.0
OG1 CG1 CB HG11 180.0 180.0
CA CB CG2 CG1 238.1 240.0
CG2 CB CA HA 61.1 180.0
CA CB CG2 HB 119.3 120.0
CG2 CB CG1 OG1 283.9 120.0
CG1 CB CG2 HB 241.1 240.0
CG2 CB CG1 HG11 103.9 300.0
HG21 CG2 CB HG22 240.0 240.0
HG21 CG2 CB HG23 120.0 120.0
HG22 CG2 CB HG23 240.0 240.0
OG1 CG1 CB CG2 283.9 120.0
OG1 CG1 CB HB 164.5 0.0
CB CG1 OG1 HG11 180.0 180.0
H N CA CB 60.7 176.0
CA N H H2 120.0 124.0
H N CA HA 301.6 56.0
H2 N CA CB 180.7 300.0
CA N H2 H 240.0 236.0
H2 N CA HA 61.6 180.0
HA CA C OXT 350.1 40.3
C CA HA N 118.0 120.0
C CA HA CB 238.8 240.0
N CA HA CB 120.8 120.0
HA CA N H 301.6 56.0
HA CA N H2 61.6 180.0
HA CA CB CG1 299.5 60.0
HA CA CB CG2 61.1 180.0
HA CA CB HB 180.6 300.0
CA CB HB CG1 120.3 120.0
CA CB HB CG2 240.3 240.0
HB CB CA HA 180.6 300.0
CG1 CB HB CG2 120.0 120.0
HB CB CG1 OG1 164.5 0.0
HB CB CG1 HG11 344.5 180.0
HB CB CG2 HG21 60.7 60.0
HB CB CG2 HG22 180.8 180.0
HB CB CG2 HG23 300.7 300.0
HG11 CG1 CB CG2 103.9 300.0
CB CG1 HG11 OG1 180.0 180.0
HG11 CG1 CB HB 344.5 180.0
HG21 CG2 CB HB 60.7 60.0
CB CG2 HG21 HG22 120.0 120.0
CB CG2 HG21 HG23 240.0 240.0
HG22 CG2 HG21 HG23 120.0 120.0
HG22 CG2 CB HB 180.8 180.0
CB CG2 HG22 HG21 240.0 240.0
CB CG2 HG22 HG23 120.0 120.0
HG21 CG2 HG22 HG23 240.0 240.0
HG23 CG2 CB HB 300.7 300.0
CB CG2 HG23 HG21 120.0 120.0
CB CG2 HG23 HG22 240.0 240.0
HG21 CG2 HG23 HG22 120.0 120.0