PDB Chemical Component LVN
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for LVN
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C |
O |
1.222 |
1.209 |
| C |
CA |
1.520 |
1.506 |
| C |
OXT |
1.543 |
1.342 |
| N |
CA |
1.461 |
1.469 |
| CA |
CB |
1.520 |
1.530 |
| CB |
CG1 |
1.530 |
1.507 |
| CB |
CG2 |
1.527 |
1.530 |
| CG1 |
OG1 |
1.231 |
1.207 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.008 |
| CA |
HA |
1.100 |
1.089 |
| CB |
HB |
1.100 |
1.090 |
| CG1 |
HG11 |
1.080 |
1.080 |
| CG2 |
HG21 |
1.100 |
1.090 |
| CG2 |
HG22 |
1.100 |
1.090 |
| CG2 |
HG23 |
1.100 |
1.090 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for LVN
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
CA |
123.5 |
120.0 |
| O |
C |
OXT |
127.9 |
119.9 |
| CA |
C |
OXT |
107.4 |
120.1 |
| C |
CA |
N |
105.4 |
109.5 |
| C |
CA |
CB |
110.7 |
109.5 |
| C |
CA |
HA |
111.5 |
109.5 |
| C |
OXT |
HXT |
109.5 |
117.1 |
| N |
CA |
CB |
109.9 |
109.4 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.0 |
| N |
CA |
HA |
112.2 |
109.5 |
| CA |
CB |
CG1 |
110.5 |
109.5 |
| CA |
CB |
CG2 |
109.6 |
109.5 |
| CB |
CA |
HA |
107.1 |
109.5 |
| CA |
CB |
HB |
108.9 |
109.5 |
| CG1 |
CB |
CG2 |
110.2 |
109.5 |
| CB |
CG1 |
OG1 |
121.3 |
120.0 |
| CG1 |
CB |
HB |
108.3 |
109.4 |
| CB |
CG1 |
HG11 |
119.3 |
120.0 |
| CG2 |
CB |
HB |
109.3 |
109.4 |
| CB |
CG2 |
HG21 |
109.5 |
109.5 |
| CB |
CG2 |
HG22 |
109.5 |
109.4 |
| CB |
CG2 |
HG23 |
109.5 |
109.5 |
| OG1 |
CG1 |
HG11 |
119.3 |
120.0 |
| H |
N |
H2 |
109.5 |
111.0 |
| HG21 |
CG2 |
HG22 |
109.5 |
109.5 |
| HG21 |
CG2 |
HG23 |
109.5 |
109.5 |
| HG22 |
CG2 |
HG23 |
109.5 |
109.5 |
Torsion Angles for LVN
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
C |
O |
OXT |
165.3 |
180.3 |
| O |
C |
CA |
N |
304.2 |
340.0 |
| O |
C |
CA |
CB |
63.0 |
99.9 |
| O |
C |
CA |
HA |
182.2 |
220.0 |
| O |
C |
OXT |
HXT |
0.0 |
0.1 |
| O |
C |
CA |
OXT |
192.1 |
179.7 |
| CA |
C |
OXT |
HXT |
192.8 |
179.8 |
| N |
CA |
C |
CB |
241.2 |
240.0 |
| C |
CA |
N |
H |
180.0 |
296.0 |
| C |
CA |
N |
H2 |
300.0 |
60.0 |
| N |
CA |
C |
HA |
122.0 |
120.0 |
| C |
CA |
CB |
CG1 |
61.3 |
180.0 |
| C |
CA |
CB |
CG2 |
182.9 |
300.0 |
| CB |
CA |
C |
HA |
240.8 |
240.0 |
| C |
CA |
CB |
HB |
302.4 |
60.0 |
| O |
C |
OXT |
CA |
167.2 |
180.3 |
| OXT |
C |
CA |
N |
112.1 |
160.3 |
| OXT |
C |
CA |
CB |
230.9 |
280.3 |
| OXT |
C |
CA |
HA |
350.1 |
40.3 |
| N |
CA |
C |
OXT |
112.1 |
160.3 |
| C |
CA |
N |
CB |
119.3 |
120.0 |
| C |
CA |
N |
HA |
238.4 |
240.0 |
| N |
CA |
CB |
CG1 |
177.3 |
300.0 |
| N |
CA |
CB |
CG2 |
298.9 |
60.0 |
| CB |
CA |
N |
HA |
119.1 |
120.0 |
| N |
CA |
CB |
HB |
58.4 |
180.0 |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| CB |
CA |
C |
OXT |
230.9 |
280.3 |
| C |
CA |
CB |
N |
244.0 |
240.0 |
| C |
CA |
CB |
HA |
121.8 |
120.0 |
| CB |
CA |
N |
H |
60.7 |
176.0 |
| CB |
CA |
N |
H2 |
180.7 |
300.0 |
| N |
CA |
CB |
HA |
237.8 |
240.0 |
| CG1 |
CB |
CA |
CG2 |
238.4 |
240.0 |
| CA |
CB |
CG1 |
OG1 |
45.2 |
240.0 |
| CG1 |
CB |
CA |
HB |
118.9 |
120.0 |
| CA |
CB |
CG1 |
HG11 |
225.2 |
60.0 |
| CG2 |
CB |
CA |
HB |
240.5 |
240.0 |
| CA |
CB |
CG2 |
HG21 |
180.0 |
180.0 |
| CA |
CB |
CG2 |
HG22 |
300.0 |
300.0 |
| CA |
CB |
CG2 |
HG23 |
60.0 |
60.0 |
| CA |
CB |
CG1 |
CG2 |
121.3 |
120.1 |
| CG1 |
CB |
CA |
HA |
299.5 |
60.0 |
| CA |
CB |
CG1 |
HB |
240.8 |
240.0 |
| CG2 |
CB |
CG1 |
HB |
119.4 |
120.0 |
| CG1 |
CB |
CG2 |
HG21 |
301.9 |
300.0 |
| CG1 |
CB |
CG2 |
HG22 |
61.9 |
60.0 |
| CG1 |
CB |
CG2 |
HG23 |
181.9 |
180.0 |
| OG1 |
CG1 |
CB |
HG11 |
180.0 |
180.0 |
| CA |
CB |
CG2 |
CG1 |
238.1 |
240.0 |
| CG2 |
CB |
CA |
HA |
61.1 |
180.0 |
| CA |
CB |
CG2 |
HB |
119.3 |
120.0 |
| CG2 |
CB |
CG1 |
OG1 |
283.9 |
120.0 |
| CG1 |
CB |
CG2 |
HB |
241.1 |
240.0 |
| CG2 |
CB |
CG1 |
HG11 |
103.9 |
300.0 |
| HG21 |
CG2 |
CB |
HG22 |
240.0 |
240.0 |
| HG21 |
CG2 |
CB |
HG23 |
120.0 |
120.0 |
| HG22 |
CG2 |
CB |
HG23 |
240.0 |
240.0 |
| OG1 |
CG1 |
CB |
CG2 |
283.9 |
120.0 |
| OG1 |
CG1 |
CB |
HB |
164.5 |
0.0 |
| CB |
CG1 |
OG1 |
HG11 |
180.0 |
180.0 |
| H |
N |
CA |
CB |
60.7 |
176.0 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| H |
N |
CA |
HA |
301.6 |
56.0 |
| H2 |
N |
CA |
CB |
180.7 |
300.0 |
| CA |
N |
H2 |
H |
240.0 |
236.0 |
| H2 |
N |
CA |
HA |
61.6 |
180.0 |
| HA |
CA |
C |
OXT |
350.1 |
40.3 |
| C |
CA |
HA |
N |
118.0 |
120.0 |
| C |
CA |
HA |
CB |
238.8 |
240.0 |
| N |
CA |
HA |
CB |
120.8 |
120.0 |
| HA |
CA |
N |
H |
301.6 |
56.0 |
| HA |
CA |
N |
H2 |
61.6 |
180.0 |
| HA |
CA |
CB |
CG1 |
299.5 |
60.0 |
| HA |
CA |
CB |
CG2 |
61.1 |
180.0 |
| HA |
CA |
CB |
HB |
180.6 |
300.0 |
| CA |
CB |
HB |
CG1 |
120.3 |
120.0 |
| CA |
CB |
HB |
CG2 |
240.3 |
240.0 |
| HB |
CB |
CA |
HA |
180.6 |
300.0 |
| CG1 |
CB |
HB |
CG2 |
120.0 |
120.0 |
| HB |
CB |
CG1 |
OG1 |
164.5 |
0.0 |
| HB |
CB |
CG1 |
HG11 |
344.5 |
180.0 |
| HB |
CB |
CG2 |
HG21 |
60.7 |
60.0 |
| HB |
CB |
CG2 |
HG22 |
180.8 |
180.0 |
| HB |
CB |
CG2 |
HG23 |
300.7 |
300.0 |
| HG11 |
CG1 |
CB |
CG2 |
103.9 |
300.0 |
| CB |
CG1 |
HG11 |
OG1 |
180.0 |
180.0 |
| HG11 |
CG1 |
CB |
HB |
344.5 |
180.0 |
| HG21 |
CG2 |
CB |
HB |
60.7 |
60.0 |
| CB |
CG2 |
HG21 |
HG22 |
120.0 |
120.0 |
| CB |
CG2 |
HG21 |
HG23 |
240.0 |
240.0 |
| HG22 |
CG2 |
HG21 |
HG23 |
120.0 |
120.0 |
| HG22 |
CG2 |
CB |
HB |
180.8 |
180.0 |
| CB |
CG2 |
HG22 |
HG21 |
240.0 |
240.0 |
| CB |
CG2 |
HG22 |
HG23 |
120.0 |
120.0 |
| HG21 |
CG2 |
HG22 |
HG23 |
240.0 |
240.0 |
| HG23 |
CG2 |
CB |
HB |
300.7 |
300.0 |
| CB |
CG2 |
HG23 |
HG21 |
120.0 |
120.0 |
| CB |
CG2 |
HG23 |
HG22 |
240.0 |
240.0 |
| HG21 |
CG2 |
HG23 |
HG22 |
120.0 |
120.0 |