Atom Nomenclature for LU8

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for LU8

Atom Name (V3) Atom Name (V2)
C10 C1
C13 C2
C15 C3
C17 C4
C20 C5
C21 C6
C22 C7
C24 C8
C26 C9
C01 C10
C03 C11
C04 C12
C05 C13
C06 C14
C07 C15
C09 C16
C11 C17
C12 C18
C14 C19
C16 C20
C19 C21
C23 C22
C25 C23
C27 C24
C29 C25
C30 C26
C32 C27
N08 N1
N18 N2
O02 O1
O28 O2
O31 O3
H131 H1
H151 H2
H171 H3
H172 H4
H201 H5
H202 H6
H212 H7
H211 H8
H221 H9
H261 H10
H011 H11
H012 H12
H013 H13
H041 H14
H071 H15
H091 H16
H121 H17
H162 H18
H161 H19
H191 H20
H192 H21
H193 H22
H231 H23
H251 H24
H252 H25
H253 H26
H291 H27
H292 H28
H293 H29
H323 H30
H321 H31
H322 H32