PDB Chemical Component LTD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for LTD

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O32 C21 1.246 1.209
C20 C19 1.515 1.530
C21 O31 1.246 1.342
C21 CA3 1.505 1.507
C19 C18 1.521 1.530
CA3 N3 1.454 1.465
C18 C17 1.525 1.529
C17 C16 1.526 1.530
N3 C22 1.332 1.347
C11 C12 1.338 1.333
C11 C10 1.465 1.464
O3 C5 1.431 1.429
O1 C1 1.252 1.208
C12 C13 1.512 1.507
O33 C22 1.220 1.212
C9 C10 1.336 1.349
C9 C8 1.467 1.465
C22 CA2 1.503 1.507
C16 C15 1.512 1.506
C7 C8 1.340 1.333
C7 C6 1.518 1.507
C1 C2 1.506 1.507
C1 O2 1.247 1.342
C5 C4 1.522 1.531
C5 C6 1.524 1.530
SG2 C6 1.808 1.814
SG2 CB2 1.801 1.814
C3 C4 1.526 1.530
C3 C2 1.525 1.530
C13 C14 1.518 1.507
C15 C14 1.336 1.310
CA2 N2 1.476 1.469
CA2 CB2 1.526 1.530
O2 H1 0.950 0.967
C2 H2 1.100 1.089
C2 H3 1.100 1.091
C3 H4 1.100 1.090
C3 H5 1.100 1.090
C4 H6 1.100 1.089
C4 H7 1.100 1.090
C5 H8 1.100 1.090
O3 H9 0.950 0.967
C6 H10 1.101 1.090
C7 H11 1.080 1.080
C8 H12 1.080 1.080
C9 H13 1.080 1.081
C10 H14 1.080 1.080
C11 H15 1.080 1.080
C12 H16 1.080 1.079
C13 H17 1.100 1.090
C13 H18 1.100 1.090
C14 H19 1.080 1.081
C15 H20 1.080 1.080
C16 H21 1.099 1.090
C16 H22 1.100 1.091
C17 H23 1.100 1.090
C17 H24 1.100 1.090
C18 H25 1.099 1.090
C18 H26 1.100 1.091
C19 H27 1.099 1.090
C19 H28 1.100 1.090
C20 H29 1.099 1.089
C20 H30 1.099 1.091
C20 H31 1.101 1.091
O31 H32 0.950 0.967
CA3 H33 1.100 1.090
CA3 H34 1.100 1.090
N3 H35 1.001 0.970
CA2 H36 1.100 1.090
CB2 H37 1.100 1.090
CB2 H38 1.100 1.091
N2 H39 1.000 1.009
N2 H40 1.000 1.009

Bond Angles for LTD

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O32 C21 O31 122.8 120.0
O32 C21 CA3 119.3 120.0
C20 C19 H27 109.2 109.4
C20 C19 H28 109.2 109.5
O31 C21 CA3 117.9 120.0
C21 O31 H32 109.5 117.0
C21 CA3 N3 111.0 109.5
C21 CA3 H33 109.1 109.5
C21 CA3 H34 109.1 109.4
C19 C18 H25 108.8 109.5
C19 C18 H26 108.8 109.5
CA3 N3 C22 119.5 120.0
N3 CA3 H33 109.1 109.5
N3 CA3 H34 109.1 109.4
CA3 N3 H35 120.3 119.9
C18 C17 H23 109.3 109.5
C18 C17 H24 109.3 109.5
C17 C16 H21 109.2 109.4
C17 C16 H22 109.2 109.4
N3 C22 CA2 119.1 120.0
C22 N3 H35 120.3 120.1
C11 C12 C13 125.1 120.0
C12 C11 H15 116.8 119.9
C11 C12 H16 117.4 120.0
C11 C10 H14 120.7 120.0
O3 C5 C6 109.5 109.5
O3 C5 H8 109.2 109.5
O1 C1 C2 119.3 120.0
C12 C13 C14 110.3 109.4
C13 C12 H16 117.4 120.0
C12 C13 H17 109.3 109.5
C12 C13 H18 109.3 109.5
O33 C22 CA2 119.2 120.0
C10 C9 H13 118.3 120.0
C9 C10 H14 120.7 120.0
C9 C8 H12 119.6 120.0
C22 CA2 N2 108.6 109.5
C22 CA2 CB2 112.2 109.5
C22 CA2 H36 108.6 109.5
C16 C15 H20 118.5 120.0
C8 C7 H11 119.1 120.0
C7 C8 H12 119.6 120.0
C7 C6 H10 110.3 109.5
C1 C2 H2 109.3 109.5
C1 C2 H3 109.2 109.4
C1 O2 H1 109.5 117.0
C5 C4 H6 109.3 109.5
C5 C4 H7 109.3 109.4
C6 C5 H8 108.0 109.5
C5 C6 H10 110.2 109.5
SG2 C6 H10 106.9 109.5
SG2 CB2 H37 109.2 109.5
SG2 CB2 H38 109.1 109.5
C4 C3 H4 109.0 109.5
C4 C3 H5 109.0 109.5
C3 C4 H6 109.3 109.5
C3 C4 H7 109.4 109.5
C3 C2 H2 109.3 109.5
C3 C2 H3 109.3 109.4
C14 C13 H17 109.3 109.5
C14 C13 H18 109.3 109.5
C13 C14 H19 117.9 120.0
C15 C14 H19 117.8 120.0
CB2 CA2 N2 110.1 109.4
N2 CA2 H36 109.0 109.4
CA2 N2 H39 109.5 111.0
CA2 N2 H40 109.5 111.0
CB2 CA2 H36 108.3 109.4
CA2 CB2 H37 109.1 109.5
CA2 CB2 H38 109.2 109.4
H2 C2 H3 109.5 109.5
H4 C3 H5 109.5 109.4
H6 C4 H7 109.5 109.5
H17 C13 H18 109.4 109.4
H21 C16 H22 109.5 109.4
H23 C17 H24 109.5 109.4
H25 C18 H26 109.5 109.4
H27 C19 H28 109.5 109.5
H29 C20 H30 109.5 109.5
H29 C20 H31 109.5 109.4
H30 C20 H31 109.5 109.4
H33 CA3 H34 109.4 109.5
H37 CB2 H38 109.5 109.5
H39 N2 H40 109.4 110.9

Torsion Angles for LTD

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O31 C21 O32 CA3 180.1 180.0
O32 C21 O31 H32 360.0 360.0
O32 C21 CA3 N3 176.7 360.0
O32 C21 CA3 H33 297.0 120.0
O32 C21 CA3 H34 56.5 240.0
C20 C19 C18 H25 301.4 60.0
C20 C19 C18 H26 60.6 300.0
H27 C19 C20 H28 240.3 120.0
O32 C21 O31 CA3 179.9 180.0
O31 C21 CA3 N3 356.7 180.0
O31 C21 CA3 H33 116.9 300.0
O31 C21 CA3 H34 236.4 60.0
O32 C21 CA3 O31 180.1 180.0
CA3 C21 O31 H32 180.0 180.0
C21 CA3 N3 C22 205.2 180.0
N3 CA3 C21 H33 239.7 239.9
N3 CA3 C21 H34 120.2 120.0
C21 CA3 N3 H35 25.2 0.0
H33 CA3 C21 H34 240.5 240.0
C19 C18 C17 H23 311.1 60.0
C19 C18 C17 H24 70.9 300.0
H25 C18 C19 H26 240.8 120.0
C21 CA3 N3 H33 120.3 120.0
C21 CA3 N3 H34 239.7 240.0
CA3 N3 C22 CA2 180.3 180.0
C22 N3 CA3 H35 180.0 180.0
H33 CA3 N3 H34 119.5 120.0
C18 C17 C16 H21 310.8 60.0
C18 C17 C16 H22 70.5 300.0
H23 C17 C18 H24 240.2 120.0
C17 C16 C15 H20 43.4 306.9
H21 C16 C17 H22 240.3 119.9
C22 N3 CA3 H33 85.0 60.0
C22 N3 CA3 H34 325.5 300.0
CA3 N3 C22 H35 180.0 180.0
O33 C22 N3 CA2 179.5 180.0
N3 C22 CA2 N2 236.4 160.0
N3 C22 CA2 CB2 358.3 280.0
N3 C22 CA2 H36 118.0 40.0
C12 C11 C10 H14 0.5 355.5
C11 C12 C13 C14 79.1 125.5
C13 C12 C11 H16 180.0 179.9
C11 C12 C13 H17 199.3 245.6
C11 C12 C13 H18 319.0 5.6
C11 C10 C9 H13 1.0 0.0
C9 C10 C11 H14 180.0 180.0
O3 C5 C4 H6 50.8 177.1
O3 C5 C4 H7 170.6 57.0
C6 C5 O3 H8 242.0 239.9
O3 C5 C6 H10 177.1 299.4
O1 C1 C2 H2 48.2 120.0
O1 C1 C2 H3 168.0 240.0
O1 C1 O2 H1 360.0 360.0
C13 C12 C11 H15 181.1 186.1
C11 C12 C13 H16 180.0 180.1
C14 C13 C12 H17 239.9 240.0
C14 C13 C12 H18 120.2 120.0
C12 C13 C14 H19 258.8 307.0
H17 C13 C12 H18 240.3 240.0
N3 C22 O33 CA2 180.5 180.0
O33 C22 N3 H35 179.8 180.0
O33 C22 CA2 N2 57.0 340.0
O33 C22 CA2 CB2 178.8 100.0
O33 C22 CA2 H36 298.6 220.0
C11 C10 C9 H14 180.0 180.0
C10 C9 C8 H12 352.0 360.0
C9 C8 C7 H11 1.0 0.0
C7 C8 C9 H12 180.0 180.0
CA2 C22 N3 H35 0.3 0.0
CB2 CA2 C22 N2 121.9 120.0
N2 CA2 C22 H36 118.4 120.0
C22 CA2 N2 H39 180.0 296.1
C22 CA2 N2 H40 300.0 59.9
CB2 CA2 C22 H36 240.3 240.0
C22 CA2 CB2 H37 159.8 300.0
C22 CA2 CB2 H38 40.1 60.0
C16 C15 C14 H19 180.4 187.1
C9 C8 C7 H12 180.0 180.0
C8 C7 C6 H10 6.2 360.0
C7 C6 C5 H8 181.5 299.3
C5 C6 C7 H10 236.9 240.0
SG2 C6 C7 H10 118.0 120.0
C2 C1 O2 H1 179.7 179.9
C3 C2 C1 H2 239.9 239.9
C3 C2 C1 H3 120.1 119.9
H2 C2 C1 H3 240.3 240.0
C5 C4 C3 H4 308.1 60.0
C5 C4 C3 H5 67.5 300.0
C3 C4 C5 H6 240.0 120.0
C3 C4 C5 H7 120.1 240.0
H6 C4 C5 H7 240.1 120.0
O3 C5 C6 H8 118.8 120.1
C7 C6 C5 H10 123.1 120.0
C6 C5 C4 H6 288.8 57.1
C6 C5 C4 H7 48.6 297.0
SG2 C6 C5 H10 244.2 240.0
C7 C6 SG2 H10 240.0 240.0
SG2 C6 C5 H8 302.5 59.3
C5 C6 SG2 H10 118.0 120.0
CB2 SG2 C6 H10 49.2 54.1
SG2 CB2 CA2 N2 41.0 300.0
SG2 CB2 CA2 H36 160.0 60.0
CA2 CB2 SG2 H37 239.8 120.0
CA2 CB2 SG2 H38 120.2 240.0
H37 CB2 SG2 H38 240.4 120.0
C5 C4 C3 H6 120.1 240.0
C5 C4 C3 H7 239.9 120.0
C4 C3 C2 H2 194.3 60.0
C4 C3 C2 H3 74.5 300.0
H4 C3 C4 H5 240.6 120.0
H6 C4 C3 H7 119.9 239.9
C1 C2 C3 H2 120.1 120.1
C1 C2 C3 H3 239.9 240.0
H2 C2 C3 H3 119.8 120.0
C14 C13 C12 H16 259.1 305.5
C12 C13 C14 H17 120.1 120.0
C12 C13 C14 H18 239.9 240.0
C15 C14 C13 H19 180.0 180.0
H17 C13 C14 H18 119.7 120.0
C15 C14 C13 H17 318.7 7.0
C15 C14 C13 H18 198.9 247.0
C13 C14 C15 H19 180.0 180.0
C22 CA2 N2 CB2 123.1 120.0
C22 CA2 N2 H36 241.8 239.9
CB2 CA2 N2 H36 118.7 119.9
N2 CA2 CB2 H37 280.8 60.1
N2 CA2 CB2 H38 161.2 180.0
H39 N2 CA2 H40 240.0 236.1
C22 CA2 CB2 N2 239.0 239.9
C22 CA2 CB2 H36 119.9 120.0
SG2 CB2 CA2 H37 120.2 240.0
SG2 CB2 CA2 H38 239.8 120.0
N2 CA2 CB2 H36 240.9 240.1
CB2 CA2 N2 H39 56.9 176.1
CB2 CA2 N2 H40 176.9 299.9
H37 CB2 CA2 H38 119.6 240.0
C1 C2 H2 H3 119.6 120.0
C3 C2 H2 H3 240.3 240.0
C1 C2 H3 H2 240.4 240.0
C3 C2 H3 H2 119.7 120.0
C4 C3 H4 H5 119.1 240.0
H4 C3 C4 H6 188.0 180.0
H4 C3 C4 H7 68.1 300.1
H4 C3 C2 H2 74.0 180.0
H4 C3 C2 H3 314.2 60.0
C4 C3 H5 H4 240.9 120.0
H5 C3 C4 H6 307.4 60.0
H5 C3 C4 H7 187.6 180.1
H5 C3 C2 H2 314.6 299.9
H5 C3 C2 H3 194.8 180.0
C5 C4 H6 H7 119.8 240.0
H6 C4 C3 H4 188.0 180.0
H6 C4 C3 H5 307.4 60.0
C3 C4 H6 H7 240.2 120.1
C5 C4 H7 H6 240.2 120.0
H7 C4 C3 H4 68.1 300.1
H7 C4 C3 H5 187.6 180.1
C3 C4 H7 H6 119.8 240.0
O3 C5 H8 C6 241.1 239.9
H8 C5 C4 H6 170.0 297.1
H8 C5 C4 H7 289.9 177.0
H8 C5 C6 H10 58.3 179.3
H9 O3 C5 C6 303.4 60.0
H9 O3 C5 H8 61.5 180.0
H10 C6 C5 H8 58.3 179.3
H11 C7 C8 H12 181.0 180.0
H11 C7 C6 H10 186.1 180.0
H12 C8 C7 H11 181.0 180.0
H13 C9 C10 H14 180.9 180.0
H13 C9 C8 H12 172.0 180.0
H14 C10 C9 H13 180.9 180.0
H15 C11 C12 C13 181.1 186.1
H15 C11 C12 H16 1.0 6.2
H15 C11 C10 H14 180.5 175.6
C11 C12 H16 C13 180.0 179.9
H16 C12 C11 H15 1.0 6.2
H16 C12 C13 C14 259.1 305.5
H16 C12 C13 H17 19.3 65.5
H16 C12 C13 H18 139.0 185.5
C12 C13 H17 C14 239.2 240.0
H17 C13 C12 H16 19.3 65.5
C12 C13 H17 H18 119.6 120.0
C14 C13 H17 H18 240.4 240.0
H17 C13 C14 H19 138.7 186.9
C12 C13 H18 C14 120.8 120.0
H18 C13 C12 H16 139.0 185.5
C12 C13 H18 H17 240.4 240.0
C14 C13 H18 H17 119.6 120.0
H18 C13 C14 H19 18.9 67.0
H19 C14 C13 H17 138.7 186.9
H19 C14 C13 H18 18.9 67.0
H20 C15 C14 H19 0.4 7.2
C17 C16 H21 H22 119.5 240.1
H21 C16 C15 H20 283.3 67.0
C17 C16 H22 H21 240.5 119.9
H22 C16 C15 H20 163.6 186.9
C18 C17 H23 H24 119.7 240.0
H23 C17 C16 H21 190.8 180.0
H23 C17 C16 H22 310.4 60.1
C18 C17 H24 H23 240.3 120.0
H24 C17 C16 H21 70.9 299.9
H24 C17 C16 H22 190.6 180.0
C19 C18 H25 H26 118.7 240.0
H25 C18 C17 H23 190.7 180.0
H25 C18 C17 H24 310.5 60.0
C19 C18 H26 H25 241.3 120.0
H26 C18 C17 H23 71.5 300.0
H26 C18 C17 H24 191.3 180.0
C20 C19 H27 H28 119.6 240.0
H27 C19 C18 H25 181.3 179.9
H27 C19 C18 H26 300.5 60.0
C20 C19 H28 H27 240.4 120.0
H28 C19 C18 H25 61.6 300.0
H28 C19 C18 H26 180.7 180.0
H29 C20 C19 H27 300.1 60.0
H29 C20 C19 H28 59.8 300.0
H30 C20 H29 H31 120.0 119.9
H30 C20 C19 H27 60.1 180.1
H30 C20 C19 H28 179.8 60.1
H29 C20 H30 H31 240.0 240.1
H31 C20 C19 H27 180.1 300.0
H31 C20 C19 H28 299.8 180.0
H29 C20 H31 H30 120.0 120.0
H32 O31 C21 CA3 180.0 180.0
C21 CA3 H33 N3 238.6 239.9
C21 CA3 H33 H34 119.3 119.9
H33 CA3 N3 C22 85.0 60.0
N3 CA3 H33 H34 240.7 240.0
H33 CA3 N3 H35 265.0 240.0
C21 CA3 H34 N3 121.4 120.0
C21 CA3 H34 H33 240.7 240.0
H34 CA3 N3 C22 325.5 300.0
N3 CA3 H34 H33 119.3 120.0
H34 CA3 N3 H35 145.5 120.0
CA3 N3 H35 C22 180.0 180.0
H35 N3 CA3 H33 265.0 240.0
H35 N3 CA3 H34 145.5 120.0
H35 N3 C22 CA2 0.3 0.0
C22 CA2 H36 N2 118.2 120.1
C22 CA2 H36 CB2 237.9 240.0
CB2 CA2 H36 N2 240.3 240.1
H36 CA2 N2 H39 298.2 56.1
H36 CA2 N2 H40 58.2 180.0
H36 CA2 CB2 H37 39.9 180.0
H36 CA2 CB2 H38 280.2 300.0
SG2 CB2 H37 H38 119.4 240.0
H37 CB2 CA2 N2 280.8 60.1
H37 CB2 CA2 H36 39.9 180.0
CA2 CB2 H37 H38 240.6 120.0
SG2 CB2 H38 H37 240.6 120.0
H38 CB2 CA2 N2 161.2 180.0
H38 CB2 CA2 H36 280.2 300.0
CA2 CB2 H38 H37 119.4 240.0
H39 N2 CA2 H36 298.2 56.1
CA2 N2 H39 H40 120.0 123.9
H40 N2 CA2 H36 58.2 180.0
CA2 N2 H40 H39 240.0 236.1