PDB Chemical Component LST

Ideal Model

Chemical Description

Name [(1R,5R,7R,8S)-2-methyl-7-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-8-oxidanyl-3,3-bis(oxidanylidene)-6-oxa-3$l^{6}-thia-2-azabicyclo[3.2.1]octan-5-yl]methyl dihydrogen phosphate
Formula C12 H18 N3 O10 P S
Formal charge 0
Molecular weight 427.324 g/mol
Component type DNA linking
Nonstandard Parent Id DT

Chemical features

Atom count 45
Chiral atom count 4
Chiral atoms C1' C2' C3' C4'
Bond count 47
Aromatic bond count 0

Chemical Identifiers

Systematic name (OpenEye OEToolkits) [(1R,5R,7R,8S)-2-methyl-7-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-8-oxidanyl-3,3-bis(oxidanylidene)-6-oxa-3$l^{6}-thia-2-azabicyclo[3.2.1]octan-5-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CN1[C@@H]2[C@H](O)[C@](CO[P](O)(O)=O)(C[S]1(=O)=O)O[C@H]2N3C=C(C)C(=O)NC3=O
SMILES (CACTVS) CN1[CH]2[CH](O)[C](CO[P](O)(O)=O)(C[S]1(=O)=O)O[CH]2N3C=C(C)C(=O)NC3=O
Stereo SMILES (OpenEye) CC1=CN(C(=O)NC1=O)[C@H]2[C@H]3[C@@H]([C@@](O2)(CS(=O)(=O)N3C)COP(=O)(O)O)O
InChI descriptor InChI=1S/C12H18N3O10PS/c1-6-3-15(11(18)13-9(6)17)10-7-8(16)12(25-10,4-24-26(19,20)21)5-27(22,23)14(7)2/h3,7-8,10,16H,4-5H2,1-2H3,(H,13,17,18)(H2,19,20,21)/t7-,8+,10-,12+/m1/s1
InChIKey descriptor GLEXYOQXMPFGCY-CCCLYZFWSA-N

Status Information

Last modified 2016-07-15
Created 2015-08-07
Release status REL
Model PDB code 5AXF
Processing site PDBJ