PDB Chemical Component LSN
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for LSN
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N2 |
N1 |
1.311 |
1.290 |
N2 |
N3 |
1.349 |
1.288 |
N1 |
C1 |
1.452 |
1.341 |
N3 |
N4 |
1.323 |
1.289 |
C3 |
C4 |
1.513 |
1.381 |
C3 |
C2 |
1.516 |
1.392 |
C1 |
N4 |
1.447 |
1.319 |
C1 |
C2 |
1.522 |
1.483 |
C4 |
C5 |
1.511 |
1.384 |
C2 |
C7 |
1.514 |
1.403 |
C5 |
C6 |
1.503 |
1.381 |
C7 |
C6 |
1.493 |
1.392 |
C7 |
C8 |
1.529 |
1.482 |
O |
C16 |
1.422 |
1.429 |
C8 |
C14 |
1.514 |
1.395 |
C8 |
C9 |
1.547 |
1.394 |
C16 |
C15 |
1.529 |
1.507 |
C14 |
C13 |
1.485 |
1.380 |
CL |
C17 |
1.761 |
1.736 |
C9 |
C10 |
1.540 |
1.380 |
C13 |
C11 |
1.495 |
1.384 |
C10 |
C11 |
1.532 |
1.383 |
C15 |
C17 |
1.567 |
1.347 |
C15 |
N5 |
1.423 |
1.369 |
C11 |
C12 |
1.521 |
1.507 |
C17 |
N6 |
1.449 |
1.342 |
N5 |
C12 |
1.407 |
1.465 |
N5 |
C18 |
1.467 |
1.350 |
N6 |
C18 |
1.434 |
1.306 |
C18 |
C19 |
1.521 |
1.507 |
C19 |
C20 |
1.537 |
1.530 |
C20 |
C21 |
1.532 |
1.530 |
C21 |
C22 |
1.506 |
1.530 |
C16 |
H1 |
1.100 |
1.090 |
C16 |
H2 |
1.100 |
1.090 |
O |
H3 |
0.950 |
0.968 |
C19 |
H6 |
1.100 |
1.090 |
C19 |
H7 |
1.100 |
1.090 |
C20 |
H8 |
1.100 |
1.089 |
C20 |
H9 |
1.100 |
1.089 |
C21 |
H10 |
1.100 |
1.090 |
C21 |
H11 |
1.100 |
1.089 |
C22 |
H12 |
1.100 |
1.090 |
C22 |
H13 |
1.100 |
1.090 |
C22 |
H14 |
1.100 |
1.090 |
C12 |
H15 |
1.100 |
1.090 |
C12 |
H16 |
1.100 |
1.089 |
C10 |
H17 |
1.080 |
1.080 |
C9 |
H18 |
1.080 |
1.080 |
C13 |
H19 |
1.080 |
1.080 |
C14 |
H20 |
1.080 |
1.079 |
C6 |
H21 |
1.080 |
1.079 |
C5 |
H22 |
1.080 |
1.080 |
C4 |
H23 |
1.080 |
1.079 |
C3 |
H24 |
1.080 |
1.080 |
N3 |
H4 |
1.000 |
0.969 |
Bond Angles for LSN
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N2 |
N3 |
H4 |
121.6 |
125.4 |
N1 |
C1 |
N4 |
113.3 |
106.6 |
C3 |
C4 |
H23 |
119.2 |
119.8 |
C2 |
C3 |
H24 |
122.0 |
120.0 |
C4 |
C5 |
H22 |
119.8 |
119.8 |
C5 |
C6 |
H21 |
121.2 |
120.0 |
C7 |
C6 |
H21 |
121.2 |
120.0 |
O |
C16 |
H1 |
108.3 |
109.5 |
O |
C16 |
H2 |
108.4 |
109.5 |
C8 |
C14 |
H20 |
119.4 |
120.1 |
C8 |
C9 |
H18 |
121.8 |
120.0 |
C16 |
C15 |
N5 |
127.1 |
126.6 |
C14 |
C13 |
H19 |
121.9 |
119.9 |
CL |
C17 |
N6 |
122.2 |
126.0 |
C9 |
C10 |
H17 |
121.5 |
119.9 |
C15 |
C17 |
N6 |
110.6 |
108.0 |
C15 |
N5 |
C12 |
118.1 |
126.4 |
C15 |
N5 |
C18 |
111.9 |
107.2 |
C11 |
C12 |
H15 |
111.2 |
109.4 |
C11 |
C12 |
H16 |
111.3 |
109.5 |
C17 |
N6 |
C18 |
105.4 |
109.3 |
N5 |
C12 |
H15 |
111.3 |
109.5 |
N5 |
C12 |
H16 |
111.2 |
109.4 |
N6 |
C18 |
C19 |
119.9 |
125.6 |
C18 |
C19 |
C20 |
111.4 |
109.5 |
C18 |
C19 |
H6 |
109.0 |
109.4 |
C18 |
C19 |
H7 |
109.0 |
109.4 |
C19 |
C20 |
C21 |
115.9 |
109.5 |
C20 |
C19 |
H6 |
109.0 |
109.5 |
C20 |
C19 |
H7 |
109.0 |
109.5 |
C19 |
C20 |
H8 |
107.8 |
109.5 |
C19 |
C20 |
H9 |
107.9 |
109.4 |
C20 |
C21 |
C22 |
112.2 |
109.5 |
C21 |
C20 |
H8 |
107.9 |
109.5 |
C21 |
C20 |
H9 |
107.8 |
109.5 |
C20 |
C21 |
H10 |
108.8 |
109.5 |
C20 |
C21 |
H11 |
108.8 |
109.5 |
C22 |
C21 |
H10 |
108.8 |
109.5 |
C22 |
C21 |
H11 |
108.8 |
109.5 |
C21 |
C22 |
H12 |
109.5 |
109.5 |
C21 |
C22 |
H13 |
109.5 |
109.5 |
C21 |
C22 |
H14 |
109.5 |
109.5 |
H1 |
C16 |
H2 |
109.5 |
109.5 |
H6 |
C19 |
H7 |
109.5 |
109.5 |
H8 |
C20 |
H9 |
109.5 |
109.5 |
H10 |
C21 |
H11 |
109.4 |
109.4 |
H12 |
C22 |
H13 |
109.5 |
109.5 |
H12 |
C22 |
H14 |
109.5 |
109.4 |
H13 |
C22 |
H14 |
109.5 |
109.5 |
H15 |
C12 |
H16 |
109.4 |
109.5 |
Torsion Angles for LSN
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C3 |
C4 |
C5 |
H22 |
182.5 |
180.0 |
C2 |
C3 |
C4 |
H23 |
172.2 |
179.7 |
C1 |
C2 |
C3 |
H24 |
353.7 |
359.8 |
C4 |
C5 |
C6 |
H21 |
171.0 |
180.0 |
C2 |
C7 |
C6 |
H21 |
201.2 |
180.2 |
C7 |
C6 |
C5 |
H21 |
180.0 |
180.1 |
C5 |
C6 |
C7 |
H21 |
180.0 |
179.9 |
C7 |
C8 |
C14 |
H20 |
6.3 |
360.0 |
C7 |
C8 |
C9 |
H18 |
352.7 |
0.1 |
O |
C16 |
C15 |
N5 |
64.5 |
90.1 |
H1 |
C16 |
O |
H2 |
241.3 |
120.0 |
C14 |
C8 |
C9 |
H18 |
193.5 |
179.7 |
C8 |
C14 |
C13 |
H19 |
178.8 |
179.9 |
C8 |
C9 |
C10 |
H17 |
179.9 |
180.1 |
C16 |
C15 |
C17 |
N6 |
161.9 |
180.3 |
C16 |
C15 |
N5 |
C12 |
20.2 |
359.9 |
C16 |
C15 |
N5 |
C18 |
186.8 |
179.8 |
C15 |
C17 |
CL |
N6 |
166.0 |
180.4 |
CL |
C17 |
N6 |
C18 |
177.9 |
180.0 |
C13 |
C11 |
C12 |
H15 |
275.6 |
149.8 |
C13 |
C11 |
C12 |
H16 |
37.9 |
29.7 |
C10 |
C11 |
C12 |
H15 |
73.8 |
330.0 |
C10 |
C11 |
C12 |
H16 |
196.1 |
210.0 |
CL |
C17 |
C15 |
N6 |
192.6 |
179.7 |
C15 |
C17 |
N6 |
C18 |
10.0 |
359.7 |
N5 |
C15 |
C17 |
N6 |
1.1 |
0.3 |
C15 |
N5 |
C12 |
H15 |
147.6 |
210.0 |
C15 |
N5 |
C12 |
H16 |
25.4 |
330.1 |
N5 |
C12 |
C11 |
H15 |
241.1 |
120.0 |
N5 |
C12 |
C11 |
H16 |
118.8 |
240.0 |
H15 |
C12 |
C11 |
H16 |
237.7 |
120.0 |
C17 |
N6 |
C18 |
C19 |
180.3 |
180.0 |
C15 |
N5 |
C12 |
C18 |
164.1 |
179.8 |
C11 |
C12 |
N5 |
H15 |
118.9 |
240.0 |
C11 |
C12 |
N5 |
H16 |
241.1 |
120.0 |
H15 |
C12 |
N5 |
H16 |
122.3 |
240.0 |
C15 |
N5 |
C18 |
C12 |
195.1 |
180.2 |
N5 |
C18 |
C19 |
H6 |
275.5 |
29.8 |
N5 |
C18 |
C19 |
H7 |
35.0 |
149.8 |
C15 |
N5 |
C18 |
N6 |
19.2 |
360.0 |
N6 |
C18 |
C19 |
C20 |
313.8 |
90.0 |
N6 |
C18 |
C19 |
H6 |
74.0 |
210.0 |
N6 |
C18 |
C19 |
H7 |
193.5 |
330.0 |
C15 |
N5 |
C18 |
C19 |
179.7 |
180.1 |
C18 |
C19 |
C20 |
C21 |
321.4 |
180.0 |
C20 |
C19 |
C18 |
H6 |
239.7 |
240.0 |
C20 |
C19 |
C18 |
H7 |
120.3 |
120.0 |
C18 |
C19 |
C20 |
H8 |
82.4 |
300.0 |
C18 |
C19 |
C20 |
H9 |
200.5 |
60.0 |
H6 |
C19 |
C18 |
H7 |
240.6 |
240.0 |
C18 |
C19 |
C20 |
H6 |
120.3 |
120.0 |
C18 |
C19 |
C20 |
H7 |
239.7 |
240.0 |
C19 |
C20 |
C21 |
C22 |
211.6 |
180.0 |
C21 |
C20 |
C19 |
H8 |
239.1 |
240.0 |
C21 |
C20 |
C19 |
H9 |
120.9 |
120.0 |
C19 |
C20 |
C21 |
H10 |
332.1 |
300.0 |
C19 |
C20 |
C21 |
H11 |
91.2 |
60.0 |
H6 |
C19 |
C20 |
H7 |
119.4 |
120.0 |
H8 |
C20 |
C19 |
H9 |
241.9 |
240.0 |
C21 |
C20 |
C19 |
H6 |
201.2 |
60.0 |
C21 |
C20 |
C19 |
H7 |
81.7 |
300.0 |
C19 |
C20 |
C21 |
H8 |
120.9 |
120.0 |
C19 |
C20 |
C21 |
H9 |
239.1 |
240.1 |
C22 |
C21 |
C20 |
H10 |
239.6 |
240.0 |
C22 |
C21 |
C20 |
H11 |
120.4 |
120.0 |
C20 |
C21 |
C22 |
H12 |
180.0 |
180.0 |
C20 |
C21 |
C22 |
H13 |
300.0 |
300.0 |
C20 |
C21 |
C22 |
H14 |
60.0 |
60.0 |
H8 |
C20 |
C21 |
H9 |
118.1 |
120.1 |
H10 |
C21 |
C20 |
H11 |
240.8 |
240.0 |
C22 |
C21 |
C20 |
H8 |
90.7 |
60.0 |
C22 |
C21 |
C20 |
H9 |
332.6 |
299.9 |
C20 |
C21 |
C22 |
H10 |
120.4 |
120.0 |
C20 |
C21 |
C22 |
H11 |
239.6 |
240.0 |
H10 |
C21 |
C22 |
H11 |
119.2 |
120.0 |
H12 |
C22 |
C21 |
H13 |
240.0 |
240.0 |
H12 |
C22 |
C21 |
H14 |
120.0 |
120.0 |
H13 |
C22 |
C21 |
H14 |
240.0 |
240.0 |
O |
C16 |
H1 |
H2 |
118.0 |
239.9 |
H1 |
C16 |
C15 |
N5 |
303.8 |
210.0 |
O |
C16 |
H2 |
H1 |
242.0 |
120.0 |
H2 |
C16 |
C15 |
N5 |
185.1 |
330.0 |
H3 |
O |
C16 |
H1 |
300.6 |
60.1 |
H3 |
O |
C16 |
H2 |
59.3 |
300.0 |
C18 |
C19 |
H6 |
C20 |
238.3 |
240.0 |
C18 |
C19 |
H6 |
H7 |
119.1 |
120.0 |
H6 |
C19 |
C20 |
C21 |
201.2 |
60.0 |
C20 |
C19 |
H6 |
H7 |
240.8 |
240.0 |
H6 |
C19 |
C20 |
H8 |
322.1 |
180.0 |
H6 |
C19 |
C20 |
H9 |
80.3 |
300.0 |
C18 |
C19 |
H7 |
C20 |
121.7 |
120.0 |
C18 |
C19 |
H7 |
H6 |
240.9 |
240.0 |
H7 |
C19 |
C20 |
C21 |
81.7 |
300.0 |
C20 |
C19 |
H7 |
H6 |
119.1 |
120.0 |
H7 |
C19 |
C20 |
H8 |
202.7 |
60.0 |
H7 |
C19 |
C20 |
H9 |
320.8 |
180.0 |
C19 |
C20 |
H8 |
C21 |
234.2 |
240.0 |
H8 |
C20 |
C19 |
H6 |
322.1 |
180.0 |
H8 |
C20 |
C19 |
H7 |
202.7 |
60.0 |
C19 |
C20 |
H8 |
H9 |
117.1 |
120.0 |
H8 |
C20 |
C21 |
C22 |
90.7 |
60.0 |
C21 |
C20 |
H8 |
H9 |
242.9 |
240.0 |
H8 |
C20 |
C21 |
H10 |
211.1 |
180.0 |
H8 |
C20 |
C21 |
H11 |
330.3 |
300.0 |
C19 |
C20 |
H9 |
C21 |
125.8 |
120.0 |
H9 |
C20 |
C19 |
H6 |
80.3 |
300.0 |
H9 |
C20 |
C19 |
H7 |
320.8 |
180.0 |
C19 |
C20 |
H9 |
H8 |
242.9 |
240.0 |
H9 |
C20 |
C21 |
C22 |
332.6 |
299.9 |
C21 |
C20 |
H9 |
H8 |
117.1 |
120.0 |
H9 |
C20 |
C21 |
H10 |
93.0 |
59.9 |
H9 |
C20 |
C21 |
H11 |
212.2 |
179.9 |
C20 |
C21 |
H10 |
C22 |
237.5 |
240.0 |
H10 |
C21 |
C20 |
H8 |
211.1 |
180.0 |
H10 |
C21 |
C20 |
H9 |
93.0 |
59.9 |
C20 |
C21 |
H10 |
H11 |
118.7 |
120.0 |
C22 |
C21 |
H10 |
H11 |
241.3 |
240.0 |
H10 |
C21 |
C22 |
H12 |
59.6 |
59.9 |
H10 |
C21 |
C22 |
H13 |
179.6 |
180.0 |
H10 |
C21 |
C22 |
H14 |
299.6 |
300.0 |
C20 |
C21 |
H11 |
C22 |
122.5 |
120.0 |
H11 |
C21 |
C20 |
H8 |
330.3 |
300.0 |
H11 |
C21 |
C20 |
H9 |
212.2 |
179.9 |
C20 |
C21 |
H11 |
H10 |
241.2 |
240.0 |
C22 |
C21 |
H11 |
H10 |
118.8 |
120.0 |
H11 |
C21 |
C22 |
H12 |
300.4 |
300.0 |
H11 |
C21 |
C22 |
H13 |
60.4 |
60.0 |
H11 |
C21 |
C22 |
H14 |
180.4 |
180.0 |
H12 |
C22 |
C21 |
H10 |
59.6 |
59.9 |
H12 |
C22 |
C21 |
H11 |
300.4 |
300.0 |
C21 |
C22 |
H12 |
H13 |
120.0 |
120.0 |
C21 |
C22 |
H12 |
H14 |
240.0 |
240.0 |
H13 |
C22 |
H12 |
H14 |
120.0 |
120.0 |
H13 |
C22 |
C21 |
H10 |
179.6 |
180.0 |
H13 |
C22 |
C21 |
H11 |
60.4 |
60.0 |
C21 |
C22 |
H13 |
H12 |
240.0 |
240.0 |
C21 |
C22 |
H13 |
H14 |
120.0 |
120.0 |
H12 |
C22 |
H13 |
H14 |
240.0 |
240.0 |
H14 |
C22 |
C21 |
H10 |
299.6 |
300.0 |
H14 |
C22 |
C21 |
H11 |
180.4 |
180.0 |
C21 |
C22 |
H14 |
H12 |
120.0 |
120.0 |
C21 |
C22 |
H14 |
H13 |
240.0 |
240.0 |
H12 |
C22 |
H14 |
H13 |
120.0 |
120.0 |
C11 |
C12 |
H15 |
H16 |
123.3 |
240.0 |
N5 |
C12 |
H15 |
H16 |
236.7 |
120.0 |
C11 |
C12 |
H16 |
H15 |
236.7 |
120.0 |
N5 |
C12 |
H16 |
H15 |
123.3 |
240.0 |
H18 |
C9 |
C10 |
H17 |
359.9 |
0.0 |
H20 |
C14 |
C13 |
H19 |
358.8 |
0.0 |
H22 |
C5 |
C6 |
H21 |
351.0 |
360.0 |
H23 |
C4 |
C5 |
H22 |
2.5 |
0.0 |
H24 |
C3 |
C4 |
H23 |
352.2 |
359.9 |