PDB Chemical Component LSC

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for LSC

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C2 C1 1.513 1.530
C1 H1 1.100 1.090
C1 H1A 1.100 1.090
C1 H1B 1.100 1.090
C3 C2 1.527 1.529
C2 H2 1.100 1.090
C2 H2A 1.100 1.090
C4 C3 1.524 1.530
C3 H3 1.101 1.090
C3 H3A 1.100 1.090
C5 C4 1.522 1.530
C4 H4 1.100 1.090
C4 H4A 1.100 1.090
C6 C5 1.526 1.530
C5 H5 1.100 1.090
C5 H5A 1.100 1.089
C7 C6 1.527 1.531
C6 H6 1.100 1.089
C6 H6A 1.100 1.090
C8 C7 1.525 1.530
C7 H7 1.100 1.089
C7 H7A 1.100 1.090
C9 C8 1.508 1.507
C8 H8 1.100 1.090
C8 H8A 1.100 1.090
C10 C9 1.330 1.309
C9 H9 1.080 1.080
C11 C10 1.509 1.507
C10 H10 1.080 1.080
C11 C12 1.524 1.530
C11 H11 1.100 1.090
C11 H11A 1.100 1.090
C13 C12 1.525 1.530
C12 H12 1.101 1.090
C12 H12A 1.100 1.090
C14 C13 1.526 1.529
C13 H13 1.100 1.090
C13 H13A 1.100 1.090
C15 C14 1.527 1.531
C14 H14 1.099 1.090
C14 H14A 1.100 1.090
C16 C15 1.526 1.530
C15 H15 1.100 1.090
C15 H15A 1.100 1.090
C17 C16 1.524 1.530
C16 H16 1.100 1.090
C16 H16A 1.100 1.090
C18 C17 1.510 1.507
C17 H17 1.100 1.089
C17 H17A 1.099 1.090
O19 C18 1.457 1.342
C18 O32 1.220 1.209
C20 O19 1.427 1.453
C21 C20 1.527 1.530
C20 H20 1.100 1.091
C20 H20A 1.100 1.089
C22 C21 1.528 1.530
O33 C21 1.432 1.428
C21 H21 1.100 1.089
O23 C22 1.430 1.429
C22 H22 1.100 1.090
C22 H22A 1.100 1.090
P24 O23 1.615 1.610
O35 P24 1.608 1.611
O34 P24 1.510 1.480
P24 O25 1.509 1.610
O25 HO25 0.950 0.967
C31 C30 1.524 1.529
C30 O35 1.425 1.429
C30 H30 1.100 1.090
C30 H30A 1.100 1.090
N32 C31 1.468 1.469
C31 H31 1.100 1.090
C31 H31A 1.100 1.090
C33 N32 1.468 1.469
C35 N32 1.469 1.469
N32 C34 1.470 1.469
C33 H33 1.100 1.089
C33 H33A 1.099 1.090
C33 H33B 1.100 1.090
O33 HO33 0.951 0.967
C34 H34 1.100 1.089
C34 H34A 1.100 1.090
C34 H34B 1.100 1.090
C35 H35 1.100 1.090
C35 H35A 1.100 1.090
C35 H35B 1.100 1.090

Bond Angles for LSC

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 H1 109.5 109.5
C2 C1 H1A 109.5 109.5
C2 C1 H1B 109.5 109.4
H1 C1 H1A 109.5 109.4
H1 C1 H1B 109.4 109.5
H1A C1 H1B 109.4 109.5
C3 C2 H2 108.8 109.5
C3 C2 H2A 108.8 109.5
H2 C2 H2A 110.1 109.5
C4 C3 H3 108.9 109.5
C4 C3 H3A 108.9 109.4
H3 C3 H3A 110.1 109.5
C5 C4 H4 109.1 109.4
C5 C4 H4A 109.1 109.4
H4 C4 H4A 109.8 109.5
C6 C5 H5 109.0 109.5
C6 C5 H5A 109.0 109.6
H5 C5 H5A 109.9 109.4
C7 C6 H6 108.5 109.5
C7 C6 H6A 108.5 109.5
H6 C6 H6A 110.5 109.5
C8 C7 H7 109.2 109.5
C8 C7 H7A 109.2 109.5
H7 C7 H7A 109.7 109.5
C9 C8 H8 109.6 109.5
C9 C8 H8A 109.6 109.5
H8 C8 H8A 109.4 109.5
C10 C9 H9 120.0 120.0
C11 C10 H10 120.1 120.0
C12 C11 H11 109.5 109.4
C12 C11 H11A 109.5 109.5
C11 C12 H12 108.8 109.5
C11 C12 H12A 108.7 109.5
H11 C11 H11A 109.4 109.5
C13 C12 H12 108.8 109.5
C13 C12 H12A 108.8 109.5
H12 C12 H12A 110.2 109.4
C14 C13 H13 109.1 109.5
C14 C13 H13A 109.1 109.5
H13 C13 H13A 109.8 109.4
C15 C14 H14 108.7 109.4
C15 C14 H14A 108.7 109.5
H14 C14 H14A 110.2 109.5
C16 C15 H15 108.7 109.5
C16 C15 H15A 108.7 109.5
H15 C15 H15A 110.2 109.5
C17 C16 H16 109.0 109.5
C17 C16 H16A 109.0 109.5
H16 C16 H16A 110.0 109.4
C18 C17 H17 109.3 109.5
C18 C17 H17A 109.3 109.5
H17 C17 H17A 109.7 109.5
O19 C18 O32 119.1 120.0
C21 C20 H20 108.8 109.5
C21 C20 H20A 108.8 109.5
H20 C20 H20A 110.1 109.4
C22 C21 H21 108.2 109.5
O33 C21 H21 110.4 109.5
O23 C22 H22 109.6 109.4
O23 C22 H22A 109.6 109.5
H22 C22 H22A 109.4 109.4
P24 O25 HO25 109.5 114.0
C31 C30 O35 109.9 109.5
C31 C30 H30 109.3 109.5
C31 C30 H30A 109.3 109.5
O35 C30 H30 109.3 109.5
O35 C30 H30A 109.3 109.5
H30 C30 H30A 109.6 109.5
N32 C31 H31 109.8 109.5
N32 C31 H31A 109.8 109.5
H31 C31 H31A 109.1 109.4
C33 N32 C34 110.0 109.5
N32 C34 H34 109.5 109.5
N32 C34 H34A 109.4 109.5
N32 C34 H34B 109.5 109.4
H33 C33 H33A 109.5 109.5
H33 C33 H33B 109.5 109.5
H33A C33 H33B 109.5 109.4
H34 C34 H34A 109.5 109.5
H34 C34 H34B 109.5 109.5
H34A C34 H34B 109.5 109.4
H35 C35 H35A 109.5 109.4
H35 C35 H35B 109.4 109.5
H35A C35 H35B 109.5 109.5

Torsion Angles for LSC

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H1 C1 C2 H1A 240.0 240.0
H1 C1 C2 H1B 120.0 120.0
H1A C1 C2 H1B 240.0 240.0
C2 C1 H1 H1A 120.0 120.0
C2 C1 H1 H1B 240.0 240.0
H1A C1 H1 H1B 120.0 120.0
C2 C1 H1A H1 240.0 240.0
C2 C1 H1A H1B 120.0 120.0
H1 C1 H1A H1B 240.0 240.0
C2 C1 H1B H1 120.0 120.0
C2 C1 H1B H1A 240.0 240.0
H1 C1 H1B H1A 120.0 120.0
C3 C2 C1 H1 180.0 60.0
C3 C2 C1 H1A 300.0 180.0
C3 C2 C1 H1B 60.0 300.0
H2 C2 C3 H2A 120.0 120.0
H2 C2 C1 H1 300.0 180.0
H2 C2 C1 H1A 60.0 300.0
H2 C2 C1 H1B 180.0 60.0
C3 C2 H2 H2A 240.8 240.0
H2A C2 C1 H1 60.0 300.0
H2A C2 C1 H1A 180.0 60.0
H2A C2 C1 H1B 300.0 180.0
C3 C2 H2A H2 119.2 120.0
C4 C3 C2 H2 64.7 60.0
C4 C3 C2 H2A 304.7 300.0
H3 C3 C4 H3A 120.0 120.0
H3 C3 C2 H2 184.7 180.0
H3 C3 C2 H2A 64.7 60.0
C4 C3 H3 H3A 240.7 240.0
H3A C3 C2 H2 304.7 300.0
H3A C3 C2 H2A 184.7 180.0
C4 C3 H3A H3 119.3 120.0
C5 C4 C3 H3 50.4 60.0
C5 C4 C3 H3A 290.4 300.0
H4 C4 C5 H4A 120.0 120.0
H4 C4 C3 H3 170.3 180.0
H4 C4 C3 H3A 50.3 60.0
C5 C4 H4 H4A 240.4 240.0
H4A C4 C3 H3 290.3 300.0
H4A C4 C3 H3A 170.3 180.0
C5 C4 H4A H4 119.6 120.0
C6 C5 C4 H4 63.4 60.0
C6 C5 C4 H4A 303.4 300.0
H5 C5 C6 H5A 120.0 120.0
H5 C5 C4 H4 183.4 180.0
H5 C5 C4 H4A 63.4 60.0
C6 C5 H5 H5A 240.5 239.9
H5A C5 C4 H4 303.4 299.9
H5A C5 C4 H4A 183.4 179.9
C6 C5 H5A H5 119.5 120.0
C7 C6 C5 H5 138.7 60.0
C7 C6 C5 H5A 18.7 300.0
H6 C6 C7 H6A 120.0 120.0
H6 C6 C5 H5 258.7 180.0
H6 C6 C5 H5A 138.7 60.0
C7 C6 H6 H6A 241.2 240.0
H6A C6 C5 H5 18.7 300.0
H6A C6 C5 H5A 258.7 180.0
C7 C6 H6A H6 118.8 120.0
C8 C7 C6 H6 126.5 60.0
C8 C7 C6 H6A 6.5 300.0
H7 C7 C8 H7A 120.0 120.0
H7 C7 C6 H6 246.5 180.0
H7 C7 C6 H6A 126.5 60.0
C8 C7 H7 H7A 240.3 240.0
H7A C7 C6 H6 6.5 300.0
H7A C7 C6 H6A 246.5 180.0
C8 C7 H7A H7 119.7 120.0
C9 C8 C7 H7 176.2 60.0
C9 C8 C7 H7A 56.1 300.0
H8 C8 C9 H8A 120.0 120.0
H8 C8 C7 H7 296.1 180.0
H8 C8 C7 H7A 176.1 60.0
C9 C8 H8 H8A 239.8 240.0
H8A C8 C7 H7 56.2 300.0
H8A C8 C7 H7A 296.2 180.0
C9 C8 H8A H8 120.2 120.0
C10 C9 C8 H8 20.4 5.0
C10 C9 C8 H8A 260.3 245.0
H9 C9 C8 H8 200.4 185.0
H9 C9 C8 H8A 80.3 65.0
C11 C10 C9 H9 0.1 0.0
H10 C10 C9 H9 180.1 180.0
C12 C11 C10 H10 323.9 305.0
H11 C11 C12 H11A 120.0 120.0
C13 C12 C11 H12 240.0 240.0
C13 C12 C11 H12A 120.0 120.0
H12 C12 C11 H12A 240.0 240.0
H11 C11 C10 H10 83.9 65.0
C12 C11 H11 H11A 240.0 240.0
H11 C11 C12 H12 110.4 180.0
H11 C11 C12 H12A 230.4 300.0
H11A C11 C10 H10 203.9 185.0
C12 C11 H11A H11 120.0 120.0
H11A C11 C12 H12 350.4 60.0
H11A C11 C12 H12A 110.4 180.0
C13 C12 C11 H11 350.4 60.0
C13 C12 C11 H11A 230.4 300.0
C11 C12 C13 H12 120.0 120.0
C11 C12 C13 H12A 240.0 240.0
H12 C12 C13 H12A 120.0 120.0
H12 C12 C11 H11 110.4 180.0
H12 C12 C11 H11A 350.4 60.0
C11 C12 H12 H12A 119.1 120.0
C13 C12 H12 H12A 240.8 240.0
H12A C12 C11 H11 230.4 300.0
H12A C12 C11 H11A 110.4 180.0
C11 C12 H12A H12 240.9 240.0
C13 C12 H12A H12 119.2 120.0
C14 C13 C12 H12 31.4 60.0
C14 C13 C12 H12A 271.4 300.0
H13 C13 C14 H13A 120.0 120.0
H13 C13 C12 H12 151.4 180.0
H13 C13 C12 H12A 31.4 60.1
C14 C13 H13 H13A 240.4 240.0
H13A C13 C12 H12 271.4 300.0
H13A C13 C12 H12A 151.4 180.0
C14 C13 H13A H13 119.6 120.1
C15 C14 C13 H13 114.4 60.0
C15 C14 C13 H13A 354.4 300.0
H14 C14 C15 H14A 120.0 120.0
H14 C14 C13 H13 234.4 180.0
H14 C14 C13 H13A 114.4 60.0
C15 C14 H14 H14A 240.9 240.0
H14A C14 C13 H13 354.4 300.0
H14A C14 C13 H13A 234.4 180.0
C15 C14 H14A H14 119.1 119.9
C16 C15 C14 H14 164.3 60.0
C16 C15 C14 H14A 44.2 300.0
H15 C15 C16 H15A 120.0 120.0
H15 C15 C14 H14 284.3 180.0
H15 C15 C14 H14A 164.3 60.0
C16 C15 H15 H15A 240.9 240.0
H15A C15 C14 H14 44.3 300.0
H15A C15 C14 H14A 284.2 180.0
C16 C15 H15A H15 119.1 120.0
C17 C16 C15 H15 53.0 60.0
C17 C16 C15 H15A 293.1 300.0
H16 C16 C17 H16A 120.0 120.0
H16 C16 C15 H15 173.0 180.1
H16 C16 C15 H15A 53.1 60.0
C17 C16 H16 H16A 240.6 240.0
H16A C16 C15 H15 293.1 300.0
H16A C16 C15 H15A 173.1 180.0
C17 C16 H16A H16 119.4 120.1
C18 C17 C16 H16 55.3 60.0
C18 C17 C16 H16A 295.3 300.0
H17 C17 C18 H17A 120.0 120.0
H17 C17 C16 H16 175.3 180.0
H17 C17 C16 H16A 55.3 60.0
C18 C17 H17 H17A 240.2 240.0
H17A C17 C16 H16 295.3 300.0
H17A C17 C16 H16A 175.3 180.0
C18 C17 H17A H17 119.7 120.0
O19 C18 C17 H17 130.6 60.0
O19 C18 C17 H17A 10.6 300.0
O32 C18 C17 H17 309.8 240.0
O32 C18 C17 H17A 189.8 120.0
C20 O19 C18 O32 24.0 0.0
H20 C20 C21 H20A 120.0 120.0
C21 C20 H20 H20A 240.8 240.0
C21 C20 H20A H20 119.2 120.0
C22 C21 C20 H20 154.8 65.0
C22 C21 C20 H20A 34.8 305.1
O33 C21 C22 H21 239.7 240.0
O33 C21 C20 H20 33.9 305.0
O33 C21 C20 H20A 273.9 185.1
C22 C21 O33 H21 118.9 120.0
H21 C21 C20 H20 273.6 185.0
H21 C21 C20 H20A 153.6 65.0
O23 C22 C21 H21 84.7 55.0
H22 C22 O23 H22A 120.0 120.0
H22 C22 C21 H21 204.7 175.0
O23 C22 H22 H22A 239.9 240.0
H22A C22 C21 H21 324.7 295.0
O23 C22 H22A H22 120.1 120.0
P24 O23 C22 H22 81.3 60.0
P24 O23 C22 H22A 321.3 300.0
O35 P24 O25 HO25 236.5 60.1
O34 P24 O25 HO25 0.0 180.0
O35 C30 C31 H30 240.0 240.0
O35 C30 C31 H30A 120.0 120.0
H30 C30 C31 H30A 240.0 240.0
C31 C30 O35 H30 120.0 120.0
C31 C30 O35 H30A 240.0 240.0
H30 C30 O35 H30A 120.0 120.0
C31 C30 H30 O35 239.6 240.0
C31 C30 H30 H30A 119.8 120.0
O35 C30 H30 H30A 240.2 240.0
C31 C30 H30A O35 120.3 120.0
C31 C30 H30A H30 240.2 240.0
O35 C30 H30A H30 119.8 120.0
N32 C31 C30 O35 153.1 66.5
N32 C31 C30 H30 273.1 186.5
N32 C31 C30 H30A 33.2 306.5
H31 C31 N32 H31A 120.0 120.0
H31 C31 C30 O35 273.1 186.5
H31 C31 C30 H30 33.1 306.5
H31 C31 C30 H30A 153.1 66.5
N32 C31 H31 H31A 239.6 240.0
H31A C31 C30 O35 33.1 306.5
H31A C31 C30 H30 153.1 66.5
H31A C31 C30 H30A 273.2 186.5
N32 C31 H31A H31 120.4 120.0
C33 N32 C31 H31 36.4 174.4
C33 N32 C31 H31A 276.4 54.4
C33 N32 C34 H34 59.6 180.0
C33 N32 C34 H34A 179.6 300.0
C33 N32 C34 H34B 299.6 60.0
C35 N32 C31 H31 156.1 54.4
C35 N32 C31 H31A 36.1 294.5
C35 N32 C34 H34 299.2 300.0
C35 N32 C34 H34A 59.1 60.0
C35 N32 C34 H34B 179.1 179.9
C34 N32 C31 H31 275.8 294.4
C34 N32 C31 H31A 155.8 174.5
H34 C34 N32 H34A 240.0 240.0
H34 C34 N32 H34B 120.0 120.0
H34A C34 N32 H34B 240.0 240.1
H33 C33 N32 C34 300.0 311.0
H33A C33 H33 H33B 120.0 120.0
H33A C33 N32 C34 60.0 71.0
H33 C33 H33A H33B 240.0 240.0
H33B C33 N32 C34 180.0 191.0
H33 C33 H33B H33A 120.0 120.0
HO33 O33 C21 H21 298.9 180.0
N32 C34 H34 H34A 120.0 120.0
N32 C34 H34 H34B 240.0 240.0
H34A C34 H34 H34B 120.0 120.0
N32 C34 H34A H34 240.0 240.0
N32 C34 H34A H34B 120.0 119.9
H34 C34 H34A H34B 240.0 239.9
N32 C34 H34B H34 120.0 120.0
N32 C34 H34B H34A 240.0 240.0
H34 C34 H34B H34A 120.0 120.0
H35A C35 H35 H35B 120.0 120.0
H35 C35 H35A H35B 240.0 240.0
H35 C35 H35B H35A 120.0 120.0