PDB Chemical Component LSA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for LSA
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C4 |
C5 |
1.393 |
1.387 |
| C4 |
C3 |
1.401 |
1.384 |
| C4 |
H4 |
1.079 |
1.081 |
| C5 |
C6 |
1.392 |
1.366 |
| C5 |
H5 |
1.080 |
1.080 |
| C6 |
S10 |
1.763 |
1.771 |
| C6 |
C1 |
1.378 |
1.401 |
| C7 |
N9 |
1.360 |
1.341 |
| C7 |
O8 |
1.216 |
1.216 |
| C7 |
C1 |
1.512 |
1.469 |
| C3 |
C2 |
1.390 |
1.376 |
| C3 |
H3 |
1.080 |
1.080 |
| S10 |
N9 |
1.754 |
1.672 |
| S10 |
O12 |
1.441 |
1.421 |
| S10 |
O11 |
1.464 |
1.421 |
| N9 |
HN9 |
1.000 |
0.970 |
| C1 |
C2 |
1.388 |
1.405 |
| C2 |
H2 |
1.080 |
1.080 |
Bond Angles for LSA
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C5 |
C4 |
C3 |
119.5 |
119.5 |
| C5 |
C4 |
H4 |
120.3 |
120.2 |
| C4 |
C5 |
C6 |
117.1 |
119.8 |
| C4 |
C5 |
H5 |
121.5 |
120.1 |
| C3 |
C4 |
H4 |
120.2 |
120.2 |
| C4 |
C3 |
C2 |
122.2 |
120.9 |
| C4 |
C3 |
H3 |
118.9 |
119.6 |
| C6 |
C5 |
H5 |
121.4 |
120.1 |
| C5 |
C6 |
S10 |
126.0 |
134.2 |
| C5 |
C6 |
C1 |
123.8 |
122.0 |
| S10 |
C6 |
C1 |
110.2 |
103.8 |
| C6 |
S10 |
N9 |
94.7 |
99.9 |
| C6 |
S10 |
O12 |
106.8 |
107.5 |
| C6 |
S10 |
O11 |
108.2 |
107.5 |
| C6 |
C1 |
C7 |
111.1 |
112.5 |
| C6 |
C1 |
C2 |
119.1 |
117.5 |
| N9 |
C7 |
O8 |
124.4 |
121.0 |
| N9 |
C7 |
C1 |
115.2 |
118.0 |
| C7 |
N9 |
S10 |
108.8 |
105.9 |
| C7 |
N9 |
HN9 |
125.6 |
127.1 |
| O8 |
C7 |
C1 |
120.4 |
121.0 |
| C7 |
C1 |
C2 |
129.8 |
130.0 |
| C2 |
C3 |
H3 |
118.9 |
119.5 |
| C3 |
C2 |
C1 |
118.3 |
120.3 |
| C3 |
C2 |
H2 |
120.9 |
119.9 |
| N9 |
S10 |
O12 |
111.8 |
107.5 |
| N9 |
S10 |
O11 |
112.2 |
107.5 |
| S10 |
N9 |
HN9 |
125.6 |
127.1 |
| O12 |
S10 |
O11 |
120.0 |
124.3 |
| C1 |
C2 |
H2 |
120.8 |
119.8 |
Torsion Angles for LSA
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C3 |
C4 |
C5 |
H4 |
180.0 |
180.2 |
| C5 |
C4 |
C3 |
C2 |
0.0 |
-0.0 |
| C5 |
C4 |
C3 |
H3 |
180.1 |
180.0 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
180.1 |
| C4 |
C5 |
C6 |
S10 |
179.7 |
180.0 |
| C4 |
C5 |
C6 |
C1 |
0.0 |
-0.0 |
| C5 |
C4 |
C3 |
H4 |
180.0 |
179.8 |
| C3 |
C4 |
C5 |
C6 |
360.0 |
-0.0 |
| C3 |
C4 |
C5 |
H5 |
179.9 |
179.9 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
180.0 |
| C4 |
C3 |
C2 |
C1 |
360.0 |
-0.0 |
| C4 |
C3 |
C2 |
H2 |
180.0 |
179.9 |
| C5 |
C4 |
H4 |
C3 |
180.0 |
180.2 |
| H4 |
C4 |
C5 |
C6 |
180.0 |
179.8 |
| H4 |
C4 |
C5 |
H5 |
359.9 |
359.7 |
| H4 |
C4 |
C3 |
C2 |
180.0 |
180.2 |
| H4 |
C4 |
C3 |
H3 |
0.1 |
0.2 |
| C6 |
C5 |
C4 |
C3 |
360.0 |
-0.0 |
| C6 |
C5 |
C4 |
H4 |
180.0 |
179.8 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
179.9 |
| S10 |
C6 |
C5 |
C1 |
179.6 |
180.0 |
| C5 |
C6 |
S10 |
N9 |
179.9 |
180.0 |
| C5 |
C6 |
S10 |
O12 |
65.5 |
68.0 |
| C5 |
C6 |
S10 |
O11 |
295.1 |
292.0 |
| C5 |
C6 |
C1 |
C7 |
180.0 |
180.0 |
| C5 |
C6 |
C1 |
C2 |
0.0 |
-0.0 |
| H5 |
C5 |
C4 |
C3 |
179.9 |
179.9 |
| H5 |
C5 |
C4 |
H4 |
359.9 |
359.7 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
180.1 |
| H5 |
C5 |
C6 |
S10 |
359.7 |
0.1 |
| H5 |
C5 |
C6 |
C1 |
180.0 |
180.1 |
| S10 |
C6 |
C5 |
H5 |
359.7 |
0.1 |
| C5 |
C6 |
S10 |
C1 |
180.3 |
180.0 |
| S10 |
C6 |
C1 |
C7 |
0.3 |
-0.0 |
| S10 |
C6 |
C1 |
C2 |
180.3 |
180.0 |
| C7 |
N9 |
S10 |
C6 |
0.4 |
-0.0 |
| N9 |
S10 |
C6 |
O12 |
114.4 |
112.0 |
| N9 |
S10 |
C6 |
O11 |
244.8 |
248.0 |
| C6 |
S10 |
N9 |
HN9 |
180.4 |
180.1 |
| O12 |
S10 |
C6 |
O11 |
130.4 |
136.0 |
| C1 |
C6 |
C5 |
H5 |
180.0 |
180.1 |
| C5 |
C6 |
C1 |
S10 |
179.7 |
180.0 |
| C1 |
C6 |
S10 |
N9 |
359.6 |
360.0 |
| C1 |
C6 |
S10 |
O12 |
245.2 |
248.0 |
| C1 |
C6 |
S10 |
O11 |
114.8 |
112.0 |
| N9 |
C7 |
C1 |
C6 |
360.0 |
-0.0 |
| O8 |
C7 |
C1 |
C6 |
180.0 |
180.0 |
| C7 |
C1 |
C6 |
C2 |
180.0 |
180.0 |
| C3 |
C2 |
C1 |
C6 |
360.0 |
-0.0 |
| C6 |
C1 |
C2 |
H2 |
180.0 |
180.1 |
| C6 |
S10 |
N9 |
C7 |
0.4 |
-0.0 |
| C6 |
C1 |
C7 |
N9 |
360.0 |
-0.0 |
| O8 |
C7 |
N9 |
C1 |
180.0 |
180.0 |
| N9 |
C7 |
C1 |
C2 |
180.0 |
180.0 |
| C7 |
N9 |
S10 |
O12 |
110.6 |
112.0 |
| C7 |
N9 |
S10 |
O11 |
248.6 |
248.0 |
| S10 |
N9 |
C7 |
HN9 |
180.0 |
180.1 |
| C6 |
C1 |
C7 |
O8 |
180.0 |
180.0 |
| N9 |
C7 |
O8 |
C1 |
180.0 |
180.0 |
| O8 |
C7 |
N9 |
S10 |
179.7 |
180.0 |
| O8 |
C7 |
N9 |
HN9 |
359.7 |
359.9 |
| O8 |
C7 |
C1 |
C2 |
0.0 |
-0.0 |
| C6 |
C1 |
C7 |
C2 |
180.0 |
180.0 |
| N9 |
C7 |
C1 |
O8 |
180.0 |
180.0 |
| C1 |
C7 |
N9 |
S10 |
359.7 |
-0.0 |
| C1 |
C7 |
N9 |
HN9 |
179.7 |
179.9 |
| C3 |
C2 |
C1 |
C7 |
180.0 |
180.0 |
| C7 |
C1 |
C2 |
H2 |
0.0 |
0.1 |
| C2 |
C3 |
C4 |
H4 |
180.0 |
180.2 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
180.0 |
| C6 |
C1 |
C2 |
C3 |
360.0 |
-0.0 |
| C7 |
C1 |
C2 |
C3 |
180.0 |
180.0 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
180.1 |
| H3 |
C3 |
C4 |
H4 |
0.1 |
0.2 |
| C4 |
C3 |
H3 |
C2 |
180.0 |
180.0 |
| H3 |
C3 |
C2 |
C1 |
180.0 |
180.0 |
| H3 |
C3 |
C2 |
H2 |
359.9 |
359.9 |
| N9 |
S10 |
C6 |
C1 |
359.6 |
360.0 |
| C6 |
S10 |
N9 |
O12 |
249.8 |
248.0 |
| C6 |
S10 |
N9 |
O11 |
111.8 |
112.0 |
| S10 |
N9 |
C7 |
O8 |
179.7 |
180.0 |
| S10 |
N9 |
C7 |
C1 |
359.7 |
-0.0 |
| C7 |
N9 |
S10 |
HN9 |
180.0 |
179.9 |
| O12 |
S10 |
N9 |
O11 |
222.0 |
224.1 |
| O12 |
S10 |
C6 |
C1 |
245.2 |
248.0 |
| C6 |
S10 |
O12 |
N9 |
102.3 |
106.7 |
| C6 |
S10 |
O12 |
O11 |
236.7 |
233.4 |
| N9 |
S10 |
O12 |
O11 |
134.4 |
126.6 |
| O12 |
S10 |
N9 |
HN9 |
290.6 |
292.1 |
| O11 |
S10 |
C6 |
C1 |
114.8 |
112.0 |
| C6 |
S10 |
O11 |
N9 |
256.9 |
253.3 |
| C6 |
S10 |
O11 |
O12 |
122.6 |
126.6 |
| N9 |
S10 |
O11 |
O12 |
225.8 |
233.4 |
| O11 |
S10 |
N9 |
HN9 |
68.6 |
68.0 |
| HN9 |
N9 |
C7 |
O8 |
359.7 |
359.9 |
| HN9 |
N9 |
C7 |
C1 |
179.7 |
179.9 |
| C7 |
N9 |
HN9 |
S10 |
180.0 |
180.1 |
| HN9 |
N9 |
S10 |
O12 |
290.6 |
292.1 |
| HN9 |
N9 |
S10 |
O11 |
68.6 |
68.0 |
| C6 |
C1 |
C2 |
C7 |
180.0 |
180.0 |
| C1 |
C2 |
C3 |
H3 |
180.0 |
180.0 |
| C3 |
C2 |
C1 |
H2 |
180.0 |
179.9 |
| H2 |
C2 |
C3 |
H3 |
359.9 |
359.9 |
| C3 |
C2 |
H2 |
C1 |
180.0 |
180.1 |