PDB Chemical Component LS1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for LS1
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C2 |
1.357 |
1.344 |
| N1 |
C8 |
1.376 |
1.390 |
| N1 |
H1N |
1.020 |
0.970 |
| C2 |
C3 |
1.501 |
1.467 |
| C2 |
O11 |
1.239 |
1.218 |
| C3 |
C9 |
1.436 |
1.481 |
| C3 |
C12 |
1.338 |
1.365 |
| C4 |
C5 |
1.489 |
1.381 |
| C4 |
C9 |
1.497 |
1.390 |
| C4 |
H41 |
1.103 |
1.080 |
| C5 |
C6 |
1.484 |
1.385 |
| C5 |
H51 |
1.103 |
1.080 |
| C6 |
C7 |
1.494 |
1.380 |
| C6 |
H61 |
1.103 |
1.080 |
| C7 |
C8 |
1.475 |
1.390 |
| C7 |
H71 |
1.103 |
1.079 |
| C8 |
C9 |
1.453 |
1.400 |
| C12 |
N17 |
1.471 |
1.361 |
| C12 |
H121 |
1.103 |
1.079 |
| N17 |
C20 |
1.350 |
1.397 |
| N17 |
H17N |
1.020 |
0.969 |
| C20 |
C21 |
1.504 |
1.389 |
| C20 |
C25 |
1.479 |
1.389 |
| C21 |
C22 |
1.447 |
1.380 |
| C21 |
H211 |
1.103 |
1.080 |
| C22 |
C23 |
1.467 |
1.383 |
| C22 |
H221 |
1.103 |
1.080 |
| C23 |
C24 |
1.486 |
1.382 |
| C23 |
S30 |
1.755 |
1.761 |
| C24 |
C25 |
1.469 |
1.381 |
| C24 |
H241 |
1.103 |
1.080 |
| C25 |
H251 |
1.103 |
1.080 |
| S30 |
O31 |
1.425 |
1.420 |
| S30 |
O32 |
1.432 |
1.421 |
| S30 |
N33 |
1.650 |
1.655 |
| N33 |
C35 |
1.456 |
1.465 |
| N33 |
H33N |
1.020 |
0.969 |
| C35 |
H351 |
1.115 |
1.090 |
| C35 |
H352 |
1.115 |
1.090 |
| C35 |
H353 |
1.115 |
1.090 |
Bond Angles for LS1
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C8 |
110.0 |
111.4 |
| C2 |
N1 |
H1N |
124.5 |
124.4 |
| N1 |
C2 |
C3 |
108.7 |
108.0 |
| N1 |
C2 |
O11 |
127.7 |
126.0 |
| C8 |
N1 |
H1N |
125.6 |
124.2 |
| N1 |
C8 |
C7 |
130.1 |
131.7 |
| N1 |
C8 |
C9 |
109.8 |
109.1 |
| C3 |
C2 |
O11 |
123.5 |
126.0 |
| C2 |
C3 |
C9 |
105.2 |
105.0 |
| C2 |
C3 |
C12 |
126.5 |
127.4 |
| C9 |
C3 |
C12 |
128.2 |
127.5 |
| C3 |
C9 |
C4 |
132.0 |
133.2 |
| C3 |
C9 |
C8 |
106.3 |
106.4 |
| C3 |
C12 |
N17 |
123.7 |
120.0 |
| C3 |
C12 |
H121 |
113.1 |
120.0 |
| C5 |
C4 |
C9 |
118.5 |
119.7 |
| C5 |
C4 |
H41 |
120.5 |
120.1 |
| C4 |
C5 |
C6 |
119.7 |
120.1 |
| C4 |
C5 |
H51 |
120.3 |
120.0 |
| C9 |
C4 |
H41 |
121.0 |
120.2 |
| C4 |
C9 |
C8 |
121.7 |
120.4 |
| C6 |
C5 |
H51 |
119.9 |
119.9 |
| C5 |
C6 |
C7 |
120.4 |
120.6 |
| C5 |
C6 |
H61 |
119.4 |
119.7 |
| C7 |
C6 |
H61 |
120.1 |
119.7 |
| C6 |
C7 |
C8 |
119.4 |
120.1 |
| C6 |
C7 |
H71 |
120.9 |
119.9 |
| C8 |
C7 |
H71 |
119.7 |
120.1 |
| C7 |
C8 |
C9 |
120.1 |
119.1 |
| N17 |
C12 |
H121 |
123.2 |
120.0 |
| C12 |
N17 |
C20 |
125.5 |
120.0 |
| C12 |
N17 |
H17N |
106.6 |
120.0 |
| C20 |
N17 |
H17N |
106.6 |
120.0 |
| N17 |
C20 |
C21 |
124.9 |
120.1 |
| N17 |
C20 |
C25 |
115.0 |
120.1 |
| C21 |
C20 |
C25 |
120.1 |
119.8 |
| C20 |
C21 |
C22 |
120.1 |
120.0 |
| C20 |
C21 |
H211 |
121.8 |
120.0 |
| C20 |
C25 |
C24 |
119.3 |
120.0 |
| C20 |
C25 |
H251 |
120.7 |
120.0 |
| C22 |
C21 |
H211 |
118.0 |
120.0 |
| C21 |
C22 |
C23 |
119.6 |
120.1 |
| C21 |
C22 |
H221 |
119.5 |
120.0 |
| C23 |
C22 |
H221 |
120.9 |
119.9 |
| C22 |
C23 |
C24 |
121.2 |
120.1 |
| C22 |
C23 |
S30 |
117.6 |
119.9 |
| C24 |
C23 |
S30 |
120.3 |
120.0 |
| C23 |
C24 |
C25 |
119.6 |
120.1 |
| C23 |
C24 |
H241 |
120.8 |
119.9 |
| C23 |
S30 |
O31 |
107.2 |
105.8 |
| C23 |
S30 |
O32 |
108.4 |
105.7 |
| C23 |
S30 |
N33 |
109.6 |
107.4 |
| C25 |
C24 |
H241 |
119.6 |
120.0 |
| C24 |
C25 |
H251 |
120.0 |
120.0 |
| O31 |
S30 |
O32 |
117.5 |
125.3 |
| O31 |
S30 |
N33 |
109.9 |
105.7 |
| O32 |
S30 |
N33 |
104.0 |
105.8 |
| S30 |
N33 |
C35 |
129.1 |
120.0 |
| S30 |
N33 |
H33N |
105.4 |
120.1 |
| C35 |
N33 |
H33N |
105.4 |
119.9 |
| N33 |
C35 |
H351 |
105.4 |
109.5 |
| N33 |
C35 |
H352 |
129.1 |
109.4 |
| N33 |
C35 |
H353 |
105.4 |
109.5 |
| H351 |
C35 |
H352 |
105.4 |
109.4 |
| H351 |
C35 |
H353 |
103.8 |
109.5 |
| H352 |
C35 |
H353 |
105.4 |
109.5 |
Torsion Angles for LS1
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C8 |
N1 |
C2 |
H1N |
180.0 |
180.0 |
| C2 |
N1 |
C8 |
C7 |
177.8 |
180.0 |
| C2 |
N1 |
C8 |
C9 |
358.3 |
359.8 |
| C3 |
C2 |
N1 |
O11 |
176.8 |
180.1 |
| N1 |
C2 |
C3 |
C9 |
358.6 |
0.2 |
| N1 |
C2 |
C3 |
C12 |
182.1 |
180.0 |
| C2 |
N1 |
C8 |
H1N |
180.0 |
180.0 |
| C8 |
N1 |
C2 |
C3 |
1.9 |
0.0 |
| C8 |
N1 |
C2 |
O11 |
185.1 |
180.0 |
| C3 |
C9 |
C8 |
N1 |
0.8 |
0.3 |
| C4 |
C9 |
C8 |
N1 |
180.1 |
179.7 |
| C6 |
C7 |
C8 |
N1 |
178.3 |
180.1 |
| N1 |
C8 |
C7 |
H71 |
358.3 |
360.0 |
| C7 |
C8 |
N1 |
C9 |
179.5 |
180.3 |
| C2 |
N1 |
H1N |
C8 |
180.1 |
180.0 |
| H1N |
N1 |
C2 |
C3 |
181.9 |
180.0 |
| H1N |
N1 |
C2 |
O11 |
5.0 |
360.0 |
| H1N |
N1 |
C8 |
C7 |
357.8 |
0.0 |
| H1N |
N1 |
C8 |
C9 |
178.3 |
179.8 |
| C3 |
C2 |
N1 |
C8 |
1.9 |
0.0 |
| C3 |
C2 |
N1 |
H1N |
181.9 |
180.0 |
| N1 |
C2 |
C3 |
O11 |
183.0 |
179.9 |
| C9 |
C3 |
C2 |
C12 |
176.5 |
180.1 |
| C2 |
C3 |
C9 |
C4 |
181.1 |
180.5 |
| C2 |
C3 |
C9 |
C8 |
0.4 |
359.7 |
| C2 |
C3 |
C12 |
N17 |
5.7 |
359.9 |
| C2 |
C3 |
C12 |
H121 |
185.7 |
180.0 |
| O11 |
C2 |
N1 |
C8 |
185.1 |
180.0 |
| O11 |
C2 |
N1 |
H1N |
5.0 |
360.0 |
| N1 |
C2 |
O11 |
C3 |
176.4 |
180.1 |
| O11 |
C2 |
C3 |
C9 |
175.6 |
180.3 |
| O11 |
C2 |
C3 |
C12 |
359.1 |
0.1 |
| N1 |
C8 |
C9 |
C3 |
0.8 |
0.3 |
| C9 |
C3 |
C2 |
O11 |
175.6 |
180.3 |
| C2 |
C3 |
C9 |
C12 |
183.6 |
179.9 |
| C9 |
C3 |
C12 |
N17 |
190.0 |
179.7 |
| C9 |
C3 |
C12 |
H121 |
10.0 |
359.8 |
| C5 |
C4 |
C9 |
C3 |
179.4 |
179.6 |
| C3 |
C9 |
C4 |
H41 |
359.4 |
359.4 |
| C4 |
C9 |
C3 |
C8 |
180.8 |
180.8 |
| C7 |
C8 |
C9 |
C3 |
181.2 |
180.1 |
| C12 |
C3 |
C2 |
O11 |
359.1 |
0.1 |
| C2 |
C3 |
C12 |
C9 |
175.7 |
180.2 |
| C12 |
C3 |
C9 |
C4 |
357.6 |
0.6 |
| C12 |
C3 |
C9 |
C8 |
176.8 |
179.8 |
| N17 |
C12 |
C3 |
H121 |
180.0 |
179.9 |
| C3 |
C12 |
N17 |
C20 |
170.0 |
180.0 |
| C3 |
C12 |
N17 |
H17N |
44.7 |
0.2 |
| C3 |
C9 |
C4 |
C5 |
179.4 |
179.6 |
| C9 |
C4 |
C5 |
H41 |
180.0 |
179.8 |
| C5 |
C4 |
C9 |
C8 |
0.3 |
0.5 |
| C6 |
C5 |
C4 |
H51 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
C7 |
357.6 |
0.1 |
| C4 |
C5 |
C6 |
H61 |
177.6 |
180.0 |
| N1 |
C8 |
C9 |
C4 |
180.1 |
179.7 |
| C4 |
C9 |
C3 |
C12 |
357.6 |
0.6 |
| C3 |
C9 |
C4 |
C8 |
179.1 |
179.1 |
| C5 |
C4 |
C9 |
H41 |
180.0 |
180.2 |
| C9 |
C4 |
C5 |
C6 |
0.7 |
359.7 |
| C9 |
C4 |
C5 |
H51 |
180.6 |
179.7 |
| C7 |
C8 |
C9 |
C4 |
0.5 |
359.4 |
| C5 |
C4 |
H41 |
C9 |
180.0 |
179.8 |
| H41 |
C4 |
C5 |
C6 |
180.7 |
179.9 |
| H41 |
C4 |
C5 |
H51 |
0.7 |
360.0 |
| H41 |
C4 |
C9 |
C8 |
180.3 |
180.3 |
| C6 |
C5 |
C4 |
C9 |
0.7 |
359.7 |
| C6 |
C5 |
C4 |
H41 |
180.7 |
179.9 |
| C4 |
C5 |
C6 |
H51 |
180.0 |
180.0 |
| C7 |
C6 |
C5 |
H61 |
180.0 |
180.1 |
| C5 |
C6 |
C7 |
C8 |
3.2 |
359.9 |
| C5 |
C6 |
C7 |
H71 |
183.2 |
180.0 |
| H51 |
C5 |
C4 |
C9 |
180.6 |
179.7 |
| H51 |
C5 |
C4 |
H41 |
0.7 |
360.0 |
| C4 |
C5 |
H51 |
C6 |
180.0 |
180.0 |
| H51 |
C5 |
C6 |
C7 |
177.6 |
180.0 |
| H51 |
C5 |
C6 |
H61 |
357.6 |
360.0 |
| N1 |
C8 |
C7 |
C6 |
178.3 |
180.1 |
| C7 |
C6 |
C5 |
H51 |
177.6 |
180.0 |
| C5 |
C6 |
C7 |
H61 |
180.0 |
179.9 |
| C8 |
C7 |
C6 |
H71 |
180.0 |
179.9 |
| C6 |
C7 |
C8 |
C9 |
357.8 |
0.3 |
| H61 |
C6 |
C5 |
H51 |
357.6 |
360.0 |
| C5 |
C6 |
H61 |
C7 |
180.0 |
180.1 |
| H61 |
C6 |
C7 |
C8 |
183.2 |
180.0 |
| H61 |
C6 |
C7 |
H71 |
3.2 |
0.1 |
| C7 |
C8 |
N1 |
H1N |
357.8 |
0.0 |
| N1 |
C8 |
C7 |
C9 |
180.5 |
179.7 |
| C3 |
C9 |
C8 |
C7 |
181.2 |
180.1 |
| C4 |
C9 |
C8 |
C7 |
0.5 |
359.4 |
| C8 |
C7 |
C6 |
H61 |
183.2 |
180.0 |
| C6 |
C7 |
C8 |
H71 |
180.0 |
180.1 |
| H71 |
C7 |
C6 |
H61 |
3.2 |
0.1 |
| C6 |
C7 |
H71 |
C8 |
180.0 |
179.9 |
| H71 |
C7 |
C8 |
C9 |
177.7 |
180.2 |
| C9 |
C8 |
N1 |
H1N |
178.3 |
179.8 |
| N1 |
C8 |
C9 |
C7 |
179.6 |
180.2 |
| C8 |
C9 |
C3 |
C12 |
176.8 |
179.8 |
| C3 |
C9 |
C8 |
C4 |
180.7 |
180.7 |
| C8 |
C9 |
C4 |
H41 |
180.3 |
180.3 |
| C9 |
C8 |
C7 |
H71 |
177.7 |
180.2 |
| C3 |
C12 |
N17 |
H121 |
180.0 |
180.1 |
| C20 |
N17 |
C12 |
H17N |
125.3 |
179.8 |
| C12 |
N17 |
C20 |
C21 |
334.1 |
180.0 |
| C12 |
N17 |
C20 |
C25 |
154.5 |
0.1 |
| C3 |
C12 |
H121 |
N17 |
180.0 |
179.9 |
| H121 |
C12 |
N17 |
C20 |
350.0 |
359.9 |
| H121 |
C12 |
N17 |
H17N |
224.7 |
180.1 |
| C20 |
N17 |
C12 |
H121 |
350.0 |
359.9 |
| C12 |
N17 |
C20 |
H17N |
234.7 |
180.2 |
| C21 |
C20 |
N17 |
C25 |
179.6 |
179.9 |
| N17 |
C20 |
C21 |
C22 |
179.5 |
180.0 |
| N17 |
C20 |
C21 |
H211 |
359.6 |
0.1 |
| N17 |
C20 |
C25 |
C24 |
180.5 |
179.7 |
| N17 |
C20 |
C25 |
H251 |
0.5 |
0.0 |
| H17N |
N17 |
C12 |
H121 |
224.7 |
180.1 |
| C12 |
N17 |
H17N |
C20 |
136.1 |
179.8 |
| H17N |
N17 |
C20 |
C21 |
99.4 |
359.9 |
| H17N |
N17 |
C20 |
C25 |
279.8 |
179.9 |
| C21 |
C20 |
N17 |
H17N |
99.4 |
359.9 |
| N17 |
C20 |
C21 |
C25 |
180.4 |
180.1 |
| C21 |
C20 |
C25 |
C24 |
0.8 |
359.8 |
| C21 |
C20 |
C25 |
H251 |
180.8 |
180.1 |
| C22 |
C21 |
C20 |
H211 |
180.0 |
179.9 |
| C20 |
C21 |
C22 |
C23 |
359.7 |
0.1 |
| C20 |
C21 |
C22 |
H221 |
179.6 |
180.0 |
| C25 |
C20 |
N17 |
H17N |
279.8 |
179.9 |
| N17 |
C20 |
C25 |
C21 |
179.6 |
179.9 |
| C25 |
C20 |
C21 |
C22 |
359.1 |
360.0 |
| C25 |
C20 |
C21 |
H211 |
179.1 |
180.1 |
| C23 |
C24 |
C25 |
C20 |
0.4 |
0.5 |
| C20 |
C25 |
C24 |
H241 |
180.4 |
180.1 |
| C24 |
C25 |
C20 |
H251 |
180.0 |
179.7 |
| C22 |
C21 |
C20 |
C25 |
359.1 |
360.0 |
| C20 |
C21 |
C22 |
H211 |
180.0 |
180.1 |
| C23 |
C22 |
C21 |
H221 |
180.0 |
180.0 |
| C21 |
C22 |
C23 |
C24 |
1.6 |
0.2 |
| C21 |
C22 |
C23 |
S30 |
170.8 |
180.0 |
| H211 |
C21 |
C20 |
C25 |
179.1 |
180.1 |
| C20 |
C21 |
H211 |
C22 |
180.0 |
179.9 |
| H211 |
C21 |
C22 |
C23 |
179.6 |
180.0 |
| H211 |
C21 |
C22 |
H221 |
359.6 |
360.0 |
| C23 |
C22 |
C21 |
H211 |
179.6 |
180.0 |
| C21 |
C22 |
C23 |
H221 |
180.0 |
180.0 |
| C24 |
C23 |
C22 |
S30 |
190.8 |
180.2 |
| C22 |
C23 |
C24 |
C25 |
358.4 |
359.5 |
| C22 |
C23 |
C24 |
H241 |
178.4 |
180.0 |
| C22 |
C23 |
S30 |
O31 |
295.3 |
337.4 |
| C22 |
C23 |
S30 |
O32 |
167.5 |
202.6 |
| C22 |
C23 |
S30 |
N33 |
54.6 |
90.0 |
| H221 |
C22 |
C21 |
H211 |
359.6 |
360.0 |
| C21 |
C22 |
H221 |
C23 |
180.0 |
180.0 |
| H221 |
C22 |
C23 |
C24 |
181.6 |
180.2 |
| H221 |
C22 |
C23 |
S30 |
350.8 |
360.0 |
| C20 |
C25 |
C24 |
C23 |
0.4 |
0.5 |
| C24 |
C23 |
C22 |
H221 |
181.6 |
180.2 |
| C22 |
C23 |
C24 |
S30 |
168.9 |
179.8 |
| C24 |
C23 |
S30 |
O31 |
104.6 |
157.2 |
| C24 |
C23 |
S30 |
O32 |
336.8 |
22.4 |
| C24 |
C23 |
S30 |
N33 |
223.9 |
269.8 |
| C25 |
C24 |
C23 |
H241 |
180.0 |
179.6 |
| C23 |
C24 |
C25 |
H251 |
180.4 |
180.2 |
| S30 |
C23 |
C22 |
H221 |
350.8 |
360.0 |
| C22 |
C23 |
S30 |
C24 |
190.7 |
180.2 |
| S30 |
C23 |
C24 |
C25 |
189.5 |
179.8 |
| S30 |
C23 |
C24 |
H241 |
9.4 |
0.2 |
| O31 |
S30 |
C23 |
O32 |
127.8 |
134.8 |
| O31 |
S30 |
C23 |
N33 |
240.7 |
247.4 |
| O32 |
S30 |
C23 |
N33 |
112.9 |
112.6 |
| C23 |
S30 |
N33 |
C35 |
299.0 |
60.0 |
| C23 |
S30 |
N33 |
H33N |
173.8 |
239.9 |
| C20 |
C25 |
C24 |
H251 |
180.0 |
180.3 |
| C25 |
C24 |
C23 |
S30 |
189.5 |
179.8 |
| C23 |
C24 |
C25 |
H241 |
180.0 |
180.4 |
| H241 |
C24 |
C23 |
S30 |
9.4 |
0.2 |
| C23 |
C24 |
H241 |
C25 |
180.0 |
179.6 |
| H241 |
C24 |
C25 |
H251 |
0.4 |
359.7 |
| C20 |
C25 |
H251 |
C24 |
180.0 |
179.7 |
| H251 |
C25 |
C24 |
H241 |
0.4 |
359.7 |
| C23 |
S30 |
O31 |
O32 |
237.7 |
236.9 |
| C23 |
S30 |
O31 |
N33 |
119.1 |
113.8 |
| O32 |
S30 |
O31 |
N33 |
241.3 |
236.9 |
| O31 |
S30 |
N33 |
C35 |
56.7 |
172.7 |
| O31 |
S30 |
N33 |
H33N |
291.4 |
352.5 |
| C23 |
S30 |
O32 |
O31 |
121.7 |
123.2 |
| C23 |
S30 |
O32 |
N33 |
243.5 |
246.3 |
| O31 |
S30 |
O32 |
N33 |
121.8 |
123.1 |
| O32 |
S30 |
N33 |
C35 |
183.3 |
307.4 |
| O32 |
S30 |
N33 |
H33N |
58.1 |
127.3 |
| C23 |
S30 |
N33 |
O31 |
242.4 |
247.3 |
| C23 |
S30 |
N33 |
O32 |
115.7 |
112.6 |
| O31 |
S30 |
N33 |
O32 |
233.3 |
225.2 |
| C35 |
N33 |
S30 |
H33N |
125.3 |
180.1 |
| S30 |
N33 |
C35 |
H351 |
54.7 |
180.0 |
| S30 |
N33 |
C35 |
H352 |
180.0 |
300.0 |
| S30 |
N33 |
C35 |
H353 |
305.3 |
60.0 |
| S30 |
N33 |
C35 |
H33N |
234.7 |
179.9 |
| H351 |
C35 |
N33 |
H352 |
234.7 |
240.1 |
| H351 |
C35 |
N33 |
H353 |
109.4 |
120.0 |
| H352 |
C35 |
N33 |
H353 |
234.7 |
240.0 |
| S30 |
N33 |
H33N |
C35 |
138.9 |
180.1 |
| H33N |
N33 |
C35 |
H351 |
180.0 |
0.2 |
| H33N |
N33 |
C35 |
H352 |
305.3 |
120.1 |
| H33N |
N33 |
C35 |
H353 |
70.5 |
240.1 |
| H351 |
C35 |
N33 |
H33N |
180.0 |
0.2 |
| N33 |
C35 |
H351 |
H352 |
138.9 |
119.9 |
| N33 |
C35 |
H351 |
H353 |
249.4 |
239.9 |
| H352 |
C35 |
H351 |
H353 |
110.5 |
120.0 |
| H352 |
C35 |
N33 |
H33N |
305.3 |
120.1 |
| N33 |
C35 |
H352 |
H351 |
234.7 |
240.0 |
| N33 |
C35 |
H352 |
H353 |
125.3 |
120.0 |
| H351 |
C35 |
H352 |
H353 |
250.6 |
240.0 |
| H353 |
C35 |
N33 |
H33N |
70.5 |
240.1 |
| N33 |
C35 |
H353 |
H351 |
110.6 |
120.0 |
| N33 |
C35 |
H353 |
H352 |
221.1 |
240.0 |
| H351 |
C35 |
H353 |
H352 |
110.5 |
120.0 |