Atom Nomenclature for LRG

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for LRG

Atom Name (V3) Atom Name (V2)
CAI CAI
CAE CAE
CAC CAC
CAF CAF
CAJ CAJ
CAT CAT
CAQ CAQ
CAX CAX
CAS CAS
OAB OAB
OAA OAA
OAR OAR
CAU CAU
CAN CAN
CAP CAP
CAM CAM
CAO CAO
CAW CAW
CAV CAV
CAK CAK
CAG CAG
CAD CAD
CAH CAH
CAL CAL
HAI HAI
HAE HAE
HAC HAC
HAF HAF
HAJ HAJ
HAQ HAQ
HAQA HAQA
HAX HAX
HAN HAN
HAP HAP
HAM HAM
HAO HAO
HAK HAK
HAG HAG
HAD HAD
HAH HAH
HAL HAL
HAB HAB