Atom Nomenclature for LQZ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for LQZ

Atom Name (V3) Atom Name (V2)
C C
N N
O O
CA CA
CAA CAA
CAB CAB
CAC CAC
CAD CAD
CAF CAF
CAG CAG
CAH CAH
CAI CAI
CAJ CAJ
NAL NAL
CAN CAN
CAO CAO
CAP CAP
HA HA
HAA HAA
HAAA HAAA
HAAB HAAB
HAAC HAAC
HAB HAB
HABA HABA
HABB HABB
HAC HAC
HACA HACA
HACB HACB
HAD HAD
HADA HADA
HADB HADB
HAF HAF
HAG HAG
HAH HAH
HAI HAI
HAIA HAIA
HAJ HAJ
HAJA HAJA
HNAL HNAL