Atom Nomenclature for LQ7

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for LQ7

Atom Name (V3) Atom Name (V2)
C02 C1
C04 C2
C05 C3
C06 C4
C07 C5
C08 C6
C10 C7
C11 C8
C12 C9
C14 C10
C15 C11
C17 C12
C18 C13
C19 C14
C20 C15
C21 C16
C22 C17
C23 C18
C24 C19
C25 C20
C26 C21
C27 C22
C28 C23
N03 N1
N13 N2
O01 O1
O16 O2
S09 S1
H042 H1
H041 H2
H061 H3
H071 H4
H081 H5
H101 H6
H102 H7
H111 H8
H112 H9
H122 H10
H121 H11
H172 H12
H171 H13
H191 H14
H212 H15
H211 H16
H213 H17
H221 H18
H231 H19
H241 H20
H251 H21
H261 H22
H271 H23
H281 H24
H131 H25
H132 H26