PDB Chemical Component LPD
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for LPD
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O |
C |
1.243 |
1.228 |
| C |
N2 |
1.316 |
1.376 |
| C |
CA |
1.531 |
1.498 |
| N2 |
HN21 |
1.000 |
1.014 |
| N2 |
HN22 |
1.000 |
1.015 |
| CA |
N |
1.456 |
1.462 |
| CA |
CB |
1.528 |
1.525 |
| CA |
HA |
1.100 |
1.094 |
| N |
CD |
1.453 |
1.459 |
| N |
H |
1.000 |
1.018 |
| CD |
CG |
1.531 |
1.514 |
| CD |
HD3 |
1.100 |
1.096 |
| CD |
HD2 |
1.100 |
1.094 |
| CG |
CB |
1.511 |
1.524 |
| CG |
HG3 |
1.101 |
1.094 |
| CG |
HG2 |
1.099 |
1.097 |
| CB |
HB2 |
1.100 |
1.095 |
| CB |
HB3 |
1.100 |
1.096 |
Bond Angles for LPD
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
N2 |
122.1 |
124.1 |
| O |
C |
CA |
121.6 |
122.1 |
| N2 |
C |
CA |
116.1 |
113.8 |
| C |
N2 |
HN21 |
112.6 |
118.6 |
| C |
N2 |
HN22 |
123.7 |
122.6 |
| C |
CA |
N |
106.8 |
108.3 |
| C |
CA |
CB |
113.5 |
111.8 |
| C |
CA |
HA |
107.7 |
107.9 |
| HN21 |
N2 |
HN22 |
123.7 |
118.7 |
| N |
CA |
CB |
106.4 |
105.7 |
| N |
CA |
HA |
114.6 |
111.2 |
| CA |
N |
CD |
109.8 |
106.6 |
| CA |
N |
H |
109.4 |
112.4 |
| CB |
CA |
HA |
108.1 |
111.9 |
| CA |
CB |
CG |
105.3 |
105.2 |
| CA |
CB |
HB2 |
110.9 |
111.5 |
| CA |
CB |
HB3 |
111.8 |
112.1 |
| CD |
N |
H |
109.3 |
111.7 |
| N |
CD |
CG |
107.3 |
102.8 |
| N |
CD |
HD3 |
110.2 |
110.7 |
| N |
CD |
HD2 |
110.7 |
111.6 |
| CG |
CD |
HD3 |
110.2 |
111.0 |
| CG |
CD |
HD2 |
110.7 |
112.1 |
| CD |
CG |
CB |
106.2 |
104.4 |
| CD |
CG |
HG3 |
110.6 |
112.4 |
| CD |
CG |
HG2 |
111.3 |
110.4 |
| HD3 |
CD |
HD2 |
107.8 |
108.5 |
| CB |
CG |
HG3 |
110.6 |
112.1 |
| CB |
CG |
HG2 |
111.3 |
109.6 |
| CG |
CB |
HB2 |
110.9 |
109.8 |
| CG |
CB |
HB3 |
111.8 |
110.4 |
| HG3 |
CG |
HG2 |
107.0 |
107.9 |
| HB2 |
CB |
HB3 |
106.3 |
107.9 |
Torsion Angles for LPD
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N2 |
C |
O |
CA |
184.4 |
179.0 |
| O |
C |
N2 |
HN21 |
180.0 |
0.7 |
| O |
C |
N2 |
HN22 |
360.0 |
180.7 |
| O |
C |
CA |
N |
323.6 |
0.4 |
| O |
C |
CA |
CB |
80.5 |
116.4 |
| O |
C |
CA |
HA |
200.1 |
240.0 |
| O |
C |
N2 |
CA |
175.9 |
180.9 |
| N2 |
C |
CA |
N |
139.5 |
181.3 |
| N2 |
C |
CA |
CB |
256.4 |
297.3 |
| N2 |
C |
CA |
HA |
16.0 |
60.9 |
| HN21 |
N2 |
C |
HN22 |
180.0 |
179.9 |
| O |
C |
CA |
N2 |
184.1 |
179.1 |
| CA |
C |
N2 |
HN21 |
4.2 |
179.8 |
| CA |
C |
N2 |
HN22 |
184.1 |
359.9 |
| N |
CA |
C |
CB |
243.1 |
244.0 |
| N |
CA |
C |
HA |
123.5 |
120.5 |
| C |
CA |
N |
CD |
101.2 |
91.0 |
| C |
CA |
N |
H |
221.2 |
328.3 |
| CB |
CA |
C |
HA |
240.4 |
236.5 |
| C |
CA |
CB |
CG |
265.4 |
248.7 |
| C |
CA |
CB |
HB2 |
25.5 |
129.7 |
| C |
CA |
CB |
HB3 |
143.9 |
8.6 |
| HN21 |
N2 |
C |
CA |
4.2 |
179.8 |
| C |
N2 |
HN21 |
HN22 |
180.0 |
180.1 |
| HN22 |
N2 |
C |
CA |
184.1 |
359.9 |
| C |
N2 |
HN22 |
HN21 |
180.0 |
179.9 |
| C |
CA |
N |
CB |
121.5 |
119.9 |
| C |
CA |
N |
HA |
240.9 |
241.6 |
| CB |
CA |
N |
HA |
119.4 |
121.7 |
| N |
CA |
CB |
CG |
22.5 |
6.2 |
| N |
CA |
CB |
HB2 |
142.6 |
247.3 |
| N |
CA |
CB |
HB3 |
261.0 |
126.2 |
| CD |
N |
CA |
H |
240.0 |
122.7 |
| CA |
N |
CD |
CG |
9.9 |
39.9 |
| CA |
N |
CD |
HD3 |
129.9 |
281.3 |
| CA |
N |
CD |
HD2 |
249.0 |
160.2 |
| C |
CA |
CB |
N |
242.9 |
242.4 |
| C |
CA |
CB |
HA |
119.3 |
121.2 |
| N |
CA |
CB |
HA |
236.4 |
238.8 |
| CB |
CA |
N |
CD |
339.7 |
331.1 |
| CB |
CA |
N |
H |
99.7 |
208.4 |
| CD |
CG |
CB |
CA |
343.6 |
17.4 |
| CA |
CB |
CG |
HG3 |
223.6 |
139.3 |
| CA |
CB |
CG |
HG2 |
104.8 |
259.2 |
| CG |
CB |
CA |
HB2 |
240.0 |
119.0 |
| CG |
CB |
CA |
HB3 |
121.6 |
240.0 |
| HB2 |
CB |
CA |
HB3 |
241.6 |
121.1 |
| C |
CA |
HA |
N |
118.6 |
118.6 |
| C |
CA |
HA |
CB |
237.0 |
236.5 |
| N |
CA |
HA |
CB |
118.4 |
117.9 |
| HA |
CA |
N |
CD |
220.3 |
209.4 |
| HA |
CA |
N |
H |
340.3 |
86.7 |
| HA |
CA |
CB |
CG |
146.1 |
127.4 |
| HA |
CA |
CB |
HB2 |
266.1 |
8.5 |
| HA |
CA |
CB |
HB3 |
24.5 |
247.4 |
| CD |
N |
CA |
CB |
339.7 |
331.1 |
| CD |
N |
CA |
HA |
220.3 |
209.4 |
| CA |
N |
CD |
H |
120.0 |
236.8 |
| CG |
CD |
N |
HD3 |
240.0 |
118.6 |
| CG |
CD |
N |
HD2 |
120.9 |
239.6 |
| N |
CD |
CG |
CB |
4.7 |
325.3 |
| N |
CD |
CG |
HG3 |
124.7 |
203.5 |
| N |
CD |
CG |
HG2 |
243.4 |
83.0 |
| HD3 |
CD |
N |
HD2 |
240.9 |
121.0 |
| H |
N |
CA |
CB |
99.7 |
208.4 |
| H |
N |
CA |
HA |
340.3 |
86.7 |
| CA |
N |
H |
CD |
239.7 |
119.8 |
| H |
N |
CD |
CG |
249.9 |
163.0 |
| H |
N |
CD |
HD3 |
9.9 |
44.4 |
| H |
N |
CD |
HD2 |
129.0 |
283.4 |
| CA |
CB |
CG |
CD |
343.6 |
17.4 |
| CG |
CD |
N |
H |
249.9 |
163.0 |
| N |
CD |
CG |
HD3 |
120.0 |
241.6 |
| N |
CD |
CG |
HD2 |
239.2 |
120.1 |
| HD3 |
CD |
CG |
HD2 |
119.1 |
238.4 |
| CB |
CG |
CD |
HG3 |
240.0 |
121.8 |
| CB |
CG |
CD |
HG2 |
121.2 |
242.3 |
| CD |
CG |
CB |
HB2 |
223.5 |
137.5 |
| CD |
CG |
CB |
HB3 |
105.1 |
256.3 |
| HG3 |
CG |
CD |
HG2 |
241.2 |
120.5 |
| HD3 |
CD |
N |
H |
9.9 |
44.4 |
| N |
CD |
HD3 |
CG |
241.8 |
113.5 |
| N |
CD |
HD3 |
HD2 |
120.9 |
237.1 |
| CG |
CD |
HD3 |
HD2 |
239.1 |
123.6 |
| HD3 |
CD |
CG |
CB |
244.6 |
83.6 |
| HD3 |
CD |
CG |
HG3 |
4.6 |
321.9 |
| HD3 |
CD |
CG |
HG2 |
123.4 |
201.4 |
| HD2 |
CD |
N |
H |
129.0 |
283.4 |
| N |
CD |
HD2 |
CG |
118.8 |
245.2 |
| N |
CD |
HD2 |
HD3 |
239.4 |
122.3 |
| CG |
CD |
HD2 |
HD3 |
120.6 |
237.1 |
| HD2 |
CD |
CG |
CB |
125.5 |
205.2 |
| HD2 |
CD |
CG |
HG3 |
245.5 |
83.4 |
| HD2 |
CD |
CG |
HG2 |
4.3 |
322.9 |
| CG |
CB |
CA |
HA |
146.1 |
127.4 |
| CA |
CB |
CG |
HB2 |
120.0 |
239.9 |
| CA |
CB |
CG |
HB3 |
238.4 |
121.1 |
| CB |
CG |
CD |
HD3 |
244.6 |
83.6 |
| CB |
CG |
CD |
HD2 |
125.5 |
205.2 |
| CD |
CG |
CB |
HG3 |
120.0 |
238.1 |
| CD |
CG |
CB |
HG2 |
238.8 |
118.2 |
| HG3 |
CG |
CB |
HG2 |
118.8 |
240.2 |
| HB2 |
CB |
CG |
HB3 |
118.4 |
241.2 |
| HG3 |
CG |
CD |
HD3 |
4.6 |
321.9 |
| HG3 |
CG |
CD |
HD2 |
245.5 |
83.4 |
| CD |
CG |
HG3 |
CB |
242.6 |
117.2 |
| CD |
CG |
HG3 |
HG2 |
121.3 |
238.1 |
| CB |
CG |
HG3 |
HG2 |
238.7 |
120.8 |
| HG3 |
CG |
CB |
HB2 |
103.5 |
259.4 |
| HG3 |
CG |
CB |
HB3 |
345.2 |
18.2 |
| HG2 |
CG |
CD |
HD3 |
123.4 |
201.4 |
| HG2 |
CG |
CD |
HD2 |
4.3 |
322.9 |
| CD |
CG |
HG2 |
CB |
118.3 |
245.5 |
| CD |
CG |
HG2 |
HG3 |
239.1 |
123.2 |
| CB |
CG |
HG2 |
HG3 |
120.9 |
237.6 |
| HG2 |
CG |
CB |
HB2 |
344.8 |
19.3 |
| HG2 |
CG |
CB |
HB3 |
226.4 |
138.1 |
| HB2 |
CB |
CA |
HA |
266.1 |
8.5 |
| CA |
CB |
HB2 |
CG |
243.4 |
116.2 |
| CA |
CB |
HB2 |
HB3 |
121.7 |
236.5 |
| HB2 |
CB |
CG |
HG3 |
103.5 |
259.4 |
| HB2 |
CB |
CG |
HG2 |
344.8 |
19.3 |
| CG |
CB |
HB2 |
HB3 |
238.3 |
120.3 |
| HB3 |
CB |
CA |
HA |
24.5 |
247.4 |
| CA |
CB |
HB3 |
CG |
117.8 |
243.1 |
| CA |
CB |
HB3 |
HB2 |
238.9 |
123.2 |
| HB3 |
CB |
CG |
HG3 |
345.2 |
18.2 |
| HB3 |
CB |
CG |
HG2 |
226.4 |
138.1 |
| CG |
CB |
HB3 |
HB2 |
121.1 |
240.0 |