Atom Nomenclature for LOV

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for LOV

Atom Name (V3) Atom Name (V2)
CD1 CD1
CD2 CD2
C1G C1G
C1B C1B
CA C1A
CS CS
N N
OS OS
CT CT
C1 CA
CB CB
CG1 CG1
CG2 CG2
C C
O O
OXT OXT
HD11 HD11
HD12 HD12
HD13 HD13
HD21 HD21
HD22 HD22
HD23 HD23
H1G H1G
H1B1 H1B1
H1B2 H1B2
HA H1A
HS1 HS1
H H
H2 H2
HOS HOS
HT1 HT1
HT2 HT2
H1 HA
HB HB
HG11 HG11
HG12 HG12
HG13 HG13
HG21 HG21
HG22 HG22
HG23 HG23
HXT HXT