PDB Chemical Component LO1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for LO1
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
O1 |
1.283 |
1.213 |
| C1 |
OXT |
1.286 |
1.345 |
| C1 |
C2 |
1.470 |
1.493 |
| OXT |
HXT |
0.950 |
0.967 |
| C2 |
O2 |
1.218 |
1.214 |
| C2 |
N7 |
1.363 |
1.347 |
| C1' |
C2' |
1.388 |
1.389 |
| C1' |
C6' |
1.399 |
1.389 |
| C1' |
N7 |
1.404 |
1.396 |
| C2' |
C3' |
1.382 |
1.381 |
| C2' |
H2' |
1.104 |
1.080 |
| C3' |
C4' |
1.375 |
1.382 |
| C3' |
H3' |
1.103 |
1.080 |
| C4' |
C5' |
1.381 |
1.383 |
| C4' |
C |
1.498 |
1.506 |
| C5' |
C6' |
1.383 |
1.380 |
| C5' |
H5' |
1.103 |
1.080 |
| C6' |
H6' |
1.103 |
1.079 |
| C |
N1 |
1.461 |
1.469 |
| C |
HC1 |
1.115 |
1.089 |
| C |
HC2 |
1.115 |
1.090 |
| N1 |
H1N1 |
1.020 |
1.009 |
| N1 |
H1N2 |
1.020 |
1.009 |
| N7 |
H7 |
1.020 |
0.970 |
Bond Angles for LO1
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1 |
C1 |
OXT |
125.5 |
119.9 |
| O1 |
C1 |
C2 |
117.1 |
120.0 |
| OXT |
C1 |
C2 |
117.3 |
120.1 |
| C1 |
OXT |
HXT |
125.6 |
120.1 |
| C1 |
C2 |
O2 |
116.8 |
119.9 |
| C1 |
C2 |
N7 |
115.4 |
120.1 |
| O2 |
C2 |
N7 |
127.8 |
120.0 |
| C2 |
N7 |
C1' |
128.9 |
120.1 |
| C2 |
N7 |
H7 |
115.6 |
119.9 |
| C2' |
C1' |
C6' |
119.6 |
119.8 |
| C2' |
C1' |
N7 |
117.2 |
120.1 |
| C1' |
C2' |
C3' |
120.2 |
119.9 |
| C1' |
C2' |
H2' |
119.9 |
120.0 |
| C6' |
C1' |
N7 |
123.2 |
120.1 |
| C1' |
C6' |
C5' |
119.5 |
119.9 |
| C1' |
C6' |
H6' |
120.2 |
120.1 |
| C1' |
N7 |
H7 |
115.5 |
120.0 |
| C3' |
C2' |
H2' |
119.9 |
120.1 |
| C2' |
C3' |
C4' |
120.0 |
120.1 |
| C2' |
C3' |
H3' |
120.0 |
119.9 |
| C4' |
C3' |
H3' |
120.0 |
119.9 |
| C3' |
C4' |
C5' |
120.4 |
120.1 |
| C3' |
C4' |
C |
119.3 |
120.0 |
| C5' |
C4' |
C |
120.3 |
120.0 |
| C4' |
C5' |
C6' |
120.2 |
120.1 |
| C4' |
C5' |
H5' |
119.9 |
119.9 |
| C4' |
C |
N1 |
105.3 |
109.5 |
| C4' |
C |
HC1 |
113.8 |
109.6 |
| C4' |
C |
HC2 |
113.8 |
109.5 |
| C6' |
C5' |
H5' |
119.8 |
120.0 |
| C5' |
C6' |
H6' |
120.3 |
120.0 |
| N1 |
C |
HC1 |
113.8 |
109.5 |
| N1 |
C |
HC2 |
113.8 |
109.4 |
| C |
N1 |
H1N1 |
126.3 |
106.7 |
| C |
N1 |
H1N2 |
126.3 |
106.7 |
| HC1 |
C |
HC2 |
96.7 |
109.5 |
| H1N1 |
N1 |
H1N2 |
82.3 |
106.6 |
Torsion Angles for LO1
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OXT |
C1 |
O1 |
C2 |
179.2 |
180.0 |
| O1 |
C1 |
OXT |
HXT |
180.0 |
0.1 |
| O1 |
C1 |
C2 |
O2 |
236.2 |
180.0 |
| O1 |
C1 |
C2 |
N7 |
56.3 |
0.0 |
| O1 |
C1 |
OXT |
C2 |
180.8 |
180.0 |
| OXT |
C1 |
C2 |
O2 |
57.0 |
0.0 |
| OXT |
C1 |
C2 |
N7 |
237.1 |
180.1 |
| O1 |
C1 |
C2 |
OXT |
179.2 |
180.0 |
| C2 |
C1 |
OXT |
HXT |
359.1 |
180.0 |
| O2 |
C2 |
C1 |
N7 |
179.9 |
179.9 |
| C1 |
C2 |
N7 |
C1' |
180.8 |
185.5 |
| C1 |
C2 |
N7 |
H7 |
0.8 |
5.4 |
| HXT |
OXT |
C1 |
C2 |
359.1 |
180.0 |
| C1 |
C2 |
O2 |
N7 |
180.1 |
180.1 |
| O2 |
C2 |
N7 |
C1' |
0.9 |
5.6 |
| O2 |
C2 |
N7 |
H7 |
180.9 |
185.5 |
| C1 |
C2 |
N7 |
O2 |
179.9 |
179.9 |
| C2' |
C1' |
N7 |
C2 |
157.2 |
213.3 |
| C6' |
C1' |
N7 |
C2 |
336.3 |
33.4 |
| C1' |
N7 |
C2 |
H7 |
180.0 |
180.1 |
| C2 |
N7 |
C1' |
C2' |
157.2 |
213.3 |
| C6' |
C1' |
C2' |
N7 |
180.8 |
179.9 |
| C2' |
C1' |
C6' |
C5' |
359.4 |
359.8 |
| C2' |
C1' |
C6' |
H6' |
179.4 |
180.0 |
| C2' |
C1' |
N7 |
H7 |
337.2 |
33.4 |
| C3' |
C2' |
C1' |
H2' |
180.0 |
180.0 |
| C1' |
C2' |
C3' |
C4' |
359.7 |
360.0 |
| C1' |
C2' |
C3' |
H3' |
179.7 |
180.1 |
| C2 |
N7 |
C1' |
C6' |
336.3 |
33.4 |
| C2' |
C1' |
C6' |
N7 |
179.1 |
180.1 |
| C6' |
C1' |
C2' |
C3' |
0.8 |
359.9 |
| C6' |
C1' |
C2' |
H2' |
180.8 |
180.0 |
| C6' |
C1' |
N7 |
H7 |
156.4 |
213.5 |
| C4' |
C5' |
C6' |
C1' |
360.0 |
0.5 |
| C1' |
C6' |
C5' |
H5' |
180.0 |
179.9 |
| C5' |
C6' |
C1' |
H6' |
180.0 |
179.8 |
| C2 |
N7 |
C1' |
H7 |
180.0 |
179.9 |
| C2' |
C1' |
N7 |
C6' |
180.8 |
179.9 |
| N7 |
C1' |
C2' |
C3' |
180.0 |
180.0 |
| N7 |
C1' |
C2' |
H2' |
0.0 |
0.1 |
| N7 |
C1' |
C6' |
C5' |
180.2 |
179.7 |
| N7 |
C1' |
C6' |
H6' |
0.2 |
359.9 |
| C3' |
C2' |
C1' |
C6' |
0.8 |
359.9 |
| C3' |
C2' |
C1' |
N7 |
180.0 |
180.0 |
| C1' |
C2' |
C3' |
H2' |
180.0 |
180.0 |
| C4' |
C3' |
C2' |
H3' |
180.0 |
179.9 |
| C2' |
C3' |
C4' |
C5' |
359.7 |
0.4 |
| C2' |
C3' |
C4' |
C |
180.2 |
180.0 |
| H2' |
C2' |
C1' |
C6' |
180.8 |
180.0 |
| H2' |
C2' |
C1' |
N7 |
0.0 |
0.1 |
| C1' |
C2' |
H2' |
C3' |
180.0 |
180.0 |
| H2' |
C2' |
C3' |
C4' |
179.7 |
179.9 |
| H2' |
C2' |
C3' |
H3' |
359.7 |
0.0 |
| C4' |
C3' |
C2' |
H2' |
179.7 |
179.9 |
| C2' |
C3' |
C4' |
H3' |
180.0 |
180.1 |
| C5' |
C4' |
C3' |
C |
179.4 |
180.4 |
| C3' |
C4' |
C5' |
C6' |
0.5 |
359.4 |
| C3' |
C4' |
C5' |
H5' |
180.5 |
179.9 |
| C3' |
C4' |
C |
N1 |
97.1 |
90.1 |
| C3' |
C4' |
C |
HC1 |
331.8 |
330.1 |
| C3' |
C4' |
C |
HC2 |
222.4 |
210.0 |
| H3' |
C3' |
C2' |
H2' |
359.7 |
0.0 |
| C2' |
C3' |
H3' |
C4' |
180.0 |
179.9 |
| H3' |
C3' |
C4' |
C5' |
179.7 |
180.3 |
| H3' |
C3' |
C4' |
C |
0.2 |
359.9 |
| C1' |
C6' |
C5' |
C4' |
360.0 |
0.5 |
| C5' |
C4' |
C3' |
H3' |
179.7 |
180.3 |
| C3' |
C4' |
C5' |
C |
180.6 |
179.6 |
| C5' |
C4' |
C |
N1 |
277.6 |
269.7 |
| C5' |
C4' |
C |
HC1 |
152.4 |
149.7 |
| C5' |
C4' |
C |
HC2 |
42.9 |
29.6 |
| C6' |
C5' |
C4' |
H5' |
180.0 |
179.5 |
| C4' |
C5' |
C6' |
H6' |
180.0 |
180.3 |
| C |
C4' |
C3' |
H3' |
0.2 |
359.9 |
| C3' |
C4' |
C |
C5' |
179.4 |
180.4 |
| C |
C4' |
C5' |
C6' |
179.9 |
179.8 |
| C |
C4' |
C5' |
H5' |
359.9 |
0.3 |
| N1 |
C |
C4' |
HC1 |
125.3 |
120.0 |
| N1 |
C |
C4' |
HC2 |
234.7 |
240.1 |
| C4' |
C |
N1 |
H1N1 |
302.6 |
180.0 |
| C4' |
C |
N1 |
H1N2 |
193.1 |
293.8 |
| HC1 |
C |
C4' |
HC2 |
109.5 |
120.1 |
| C5' |
C6' |
C1' |
N7 |
180.2 |
179.7 |
| C1' |
C6' |
C5' |
H6' |
180.0 |
180.2 |
| C6' |
C5' |
C4' |
C |
179.9 |
179.8 |
| C4' |
C5' |
C6' |
H5' |
180.0 |
180.5 |
| H5' |
C5' |
C4' |
C |
359.9 |
0.3 |
| C4' |
C5' |
H5' |
C6' |
180.0 |
179.5 |
| H5' |
C5' |
C6' |
H6' |
360.0 |
359.8 |
| H6' |
C6' |
C1' |
N7 |
0.2 |
359.9 |
| C1' |
C6' |
H6' |
C5' |
180.0 |
179.8 |
| H6' |
C6' |
C5' |
H5' |
360.0 |
359.8 |
| C4' |
C |
N1 |
HC1 |
234.7 |
239.9 |
| C4' |
C |
N1 |
HC2 |
125.3 |
120.0 |
| HC1 |
C |
N1 |
HC2 |
250.6 |
240.1 |
| H1N1 |
N1 |
C |
H1N2 |
109.5 |
246.3 |
| C4' |
C |
HC1 |
N1 |
120.6 |
120.0 |
| C4' |
C |
HC1 |
HC2 |
240.3 |
239.9 |
| N1 |
C |
HC1 |
HC2 |
119.7 |
119.9 |
| HC1 |
C |
N1 |
H1N1 |
67.8 |
300.1 |
| HC1 |
C |
N1 |
H1N2 |
318.3 |
53.8 |
| C4' |
C |
HC2 |
N1 |
239.4 |
240.0 |
| C4' |
C |
HC2 |
HC1 |
119.7 |
120.1 |
| N1 |
C |
HC2 |
HC1 |
240.3 |
240.1 |
| HC2 |
C |
N1 |
H1N1 |
177.3 |
60.1 |
| HC2 |
C |
N1 |
H1N2 |
67.8 |
173.8 |
| H1N1 |
N1 |
C |
HC1 |
67.8 |
300.1 |
| H1N1 |
N1 |
C |
HC2 |
177.3 |
60.1 |
| C |
N1 |
H1N1 |
H1N2 |
230.0 |
113.7 |
| H1N2 |
N1 |
C |
HC1 |
318.3 |
53.8 |
| H1N2 |
N1 |
C |
HC2 |
67.8 |
173.8 |
| C |
N1 |
H1N2 |
H1N1 |
130.0 |
246.2 |
| C2 |
N7 |
H7 |
C1' |
180.0 |
180.1 |